Wall clock time and date at job start Mon Mar 30 2020 07:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00394 * 2 1 4 4 H 1.48497 * 109.47514 * 270.00883 * 3 2 1 5 5 H 1.48502 * 109.46598 * 30.00402 * 3 2 1 6 6 H 1.48504 * 109.47246 * 150.00187 * 3 2 1 7 7 C 1.37880 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00192 * 179.97438 * 7 2 1 10 10 C 1.52990 * 109.47178 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47112 * 173.91574 * 10 9 7 12 12 C 1.46902 * 111.00082 * 188.32552 * 11 10 9 13 13 C 1.53007 * 109.47410 * 169.99513 * 12 11 10 14 14 H 1.09003 * 110.26766 * 60.63471 * 13 12 11 15 15 C 1.54939 * 110.31192 * 182.83454 * 13 12 11 16 16 C 1.55296 * 100.94263 * 155.36126 * 15 13 12 17 17 C 1.54382 * 102.25514 * 325.86429 * 16 15 13 18 18 O 1.43241 * 107.58537 * 21.35780 * 17 16 15 19 19 C 1.46900 * 111.00558 * 64.36949 * 11 10 9 20 20 C 1.54890 * 110.48394 * 33.68527 * 19 11 10 21 21 C 1.54887 * 102.74946 * 203.38097 * 20 19 11 22 22 C 1.54271 * 104.19499 * 37.94483 * 21 20 19 23 23 C 1.53874 * 106.59548 * 336.38712 * 22 21 20 24 24 H 0.97003 * 119.99776 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46723 * 60.00071 * 9 7 2 26 26 H 1.08999 * 109.47249 * 300.00422 * 9 7 2 27 27 H 1.08997 * 109.47633 * 53.90990 * 10 9 7 28 28 H 1.09003 * 109.47504 * 293.91058 * 10 9 7 29 29 H 1.08998 * 109.47301 * 289.99885 * 12 11 10 30 30 H 1.09004 * 109.47100 * 50.00066 * 12 11 10 31 31 H 1.09000 * 111.12406 * 273.28006 * 15 13 12 32 32 H 1.09005 * 111.12816 * 37.43674 * 15 13 12 33 33 H 1.09005 * 110.85231 * 207.67501 * 16 15 13 34 34 H 1.08999 * 111.02474 * 84.13811 * 16 15 13 35 35 H 1.08999 * 109.82959 * 261.84356 * 17 16 15 36 36 H 1.08998 * 109.82895 * 140.87012 * 17 16 15 37 37 H 1.08998 * 110.54136 * 156.30362 * 19 11 10 38 38 H 1.09008 * 110.75273 * 85.06892 * 20 19 11 39 39 H 1.08999 * 110.75793 * 321.69634 * 20 19 11 40 40 H 1.09001 * 110.48875 * 279.26645 * 21 20 19 41 41 H 1.09003 * 110.48600 * 156.62533 * 21 20 19 42 42 H 1.08994 * 110.03044 * 95.67581 * 22 21 20 43 43 H 1.09002 * 110.03042 * 217.10486 * 22 21 20 44 44 H 1.09009 * 110.02731 * 119.28562 * 23 22 21 45 45 H 1.08997 * 110.03358 * 240.66015 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6366 -0.0023 11 7 5.4829 -2.6392 -0.1496 12 6 5.9892 -4.0032 -0.3529 13 6 7.4661 -3.9454 -0.7485 14 1 8.0503 -3.4727 0.0411 15 6 8.0017 -5.3704 -1.0371 16 6 9.1868 -5.0526 -1.9891 17 6 8.6625 -3.8266 -2.7672 18 8 7.6238 -3.2282 -1.9830 19 6 6.1299 -2.0044 1.0064 20 6 5.3221 -2.2806 2.2989 21 6 5.7453 -1.1118 3.2228 22 6 5.8581 0.0990 2.2735 23 6 6.1027 -0.4686 0.8644 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.5714 -3.1804 -0.8329 28 1 3.7501 -3.1187 0.9370 29 1 5.8824 -4.5718 0.5709 30 1 5.4194 -4.4878 -1.1458 31 1 8.3500 -5.8517 -0.1233 32 1 7.2485 -5.9794 -1.5371 33 1 9.3774 -5.8875 -2.6635 34 1 10.0844 -4.7993 -1.4250 35 1 8.2627 -4.1434 -3.7305 36 1 9.4708 -3.1111 -2.9181 37 1 7.1548 -2.3594 1.1138 38 1 5.6055 -3.2391 2.7340 39 1 4.2510 -2.2472 2.0996 40 1 6.7081 -1.3227 3.6882 41 1 4.9847 -0.9314 3.9825 42 1 4.9319 0.6733 2.2893 43 1 6.6948 0.7308 2.5720 44 1 5.2949 -0.1696 0.1961 45 1 7.0575 -0.1115 0.4785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173836001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:17 Heat of formation + Delta-G solvation = -40.644670 kcal Electronic energy + Delta-G solvation = -21969.383584 eV Core-core repulsion = 18986.750513 eV Total energy + Delta-G solvation = -2982.633070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.78376 -38.72764 -34.83356 -33.06734 -32.13002 -31.04248 -29.24839 -28.35313 -27.06464 -25.22871 -23.23885 -21.65777 -21.31589 -20.42513 -19.74184 -18.94463 -16.91473 -16.69623 -15.91922 -15.78311 -15.23110 -14.55893 -14.38922 -13.97048 -13.83400 -13.47461 -13.20430 -12.85791 -12.57318 -12.41714 -12.03924 -11.78604 -11.66348 -11.43074 -11.11344 -11.06138 -10.93313 -10.89208 -10.80721 -10.60036 -10.46895 -10.16918 -10.04606 -9.91720 -9.62482 -9.57247 -9.29473 -8.80061 -8.45200 -7.58725 -5.98018 -3.94871 3.37536 3.44592 3.48029 3.82640 4.35946 4.39799 4.52013 4.70364 4.81719 5.03272 5.05216 5.09827 5.19657 5.35021 5.37861 5.45410 5.51110 5.55098 5.65368 5.66542 5.73268 5.81134 5.92759 5.93560 5.95528 6.02549 6.13012 6.16462 6.20198 6.27099 6.30949 6.36494 6.49020 6.74138 6.79508 6.87182 6.93344 7.18015 7.30178 7.47700 7.75194 7.79738 7.95395 8.60681 9.06845 9.65350 11.15594 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.005651 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.878983 B = 4953.319645 C = 5425.628244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.068 3.932 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.258 1.258 7 C -0.518 4.518 8 H 0.069 0.931 9 C -0.017 4.017 10 C 0.064 3.936 11 N -0.524 5.524 12 C 0.056 3.944 13 C 0.087 3.913 14 H 0.067 0.933 15 C -0.153 4.153 16 C -0.155 4.155 17 C 0.046 3.954 18 O -0.355 6.355 19 C 0.086 3.914 20 C -0.171 4.171 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.130 4.130 24 H 0.262 0.738 25 H 0.034 0.966 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.810 -8.525 1.225 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.182 1.182 7 C -0.557 4.557 8 H 0.087 0.913 9 C -0.054 4.054 10 C -0.062 4.062 11 N -0.247 5.247 12 C -0.072 4.072 13 C 0.029 3.971 14 H 0.085 0.915 15 C -0.191 4.191 16 C -0.193 4.193 17 C -0.031 4.031 18 O -0.274 6.274 19 C -0.023 4.023 20 C -0.209 4.209 21 C -0.154 4.154 22 C -0.164 4.164 23 C -0.168 4.168 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.648 -7.955 0.724 20.287 hybrid contribution 0.335 0.196 0.717 0.815 sum 18.984 -7.760 1.441 20.559 Atomic orbital electron populations 1.69918 1.06332 1.26747 1.51587 1.24965 0.94635 0.99042 0.94622 0.86878 0.80639 0.83680 0.78662 1.20344 1.21688 1.18246 1.21147 0.89682 0.94328 1.50526 0.91322 1.19904 0.96138 0.92017 0.97329 1.22276 0.83992 1.00639 0.99304 1.62209 1.06951 1.16307 1.39191 1.22200 0.93860 0.91341 0.99819 1.23063 0.96333 0.90017 0.87704 0.91549 1.23304 0.97900 0.97784 1.00099 1.23099 0.98611 0.98740 0.98837 1.23107 0.90907 0.93918 0.95146 1.88633 1.54994 1.53682 1.30076 1.22490 0.96582 0.95305 0.87878 1.23412 1.03693 0.97328 0.96495 1.22201 1.00182 0.95463 0.97602 1.22159 1.01398 0.97561 0.95310 1.22551 1.02760 0.94214 0.97289 0.92875 0.94765 0.96094 0.91803 0.94733 0.94193 0.90402 0.90200 0.90161 0.90333 0.90832 0.91656 0.91933 0.91161 0.92874 0.88088 0.92617 0.92028 0.91458 0.92754 0.88299 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.30 13.96 55.43 0.77 -27.52 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.10 5.95 56.52 0.34 -5.76 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C -0.02 -0.40 2.15 -27.89 -0.06 -0.46 16 10 C 0.06 1.32 4.37 -3.83 -0.02 1.30 16 11 N -0.52 -9.34 4.42 -224.67 -0.99 -10.33 16 12 C 0.06 0.82 4.67 -3.82 -0.02 0.81 16 13 C 0.09 1.12 3.33 -25.70 -0.09 1.03 16 14 H 0.07 0.85 6.34 -51.93 -0.33 0.52 16 15 C -0.15 -1.46 6.57 -24.49 -0.16 -1.62 16 16 C -0.16 -1.33 7.02 -24.79 -0.17 -1.50 16 17 C 0.05 0.51 7.79 37.88 0.30 0.80 16 18 O -0.35 -5.38 10.95 -35.23 -0.39 -5.76 16 19 C 0.09 1.41 2.69 -66.05 -0.18 1.24 16 20 C -0.17 -2.74 5.39 -24.74 -0.13 -2.87 16 21 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 22 C -0.13 -2.05 6.27 -25.61 -0.16 -2.21 16 23 C -0.13 -2.29 5.65 -25.62 -0.14 -2.44 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 25 H 0.03 0.81 3.12 -51.93 -0.16 0.65 16 26 H 0.02 0.53 6.91 -51.93 -0.36 0.17 16 27 H 0.06 1.36 7.96 -51.93 -0.41 0.94 16 28 H 0.03 0.70 5.72 -51.93 -0.30 0.40 16 29 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.75 8.06 -51.93 -0.42 0.34 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.05 5.94 -51.93 -0.31 0.74 16 38 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 39 H 0.10 1.91 4.42 -51.93 -0.23 1.68 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.22 7.24 -51.93 -0.38 0.85 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.10 2.05 4.45 -51.92 -0.23 1.82 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -31.25 328.75 -9.56 -40.81 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.81 Total: 1.59 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.44 Total: -21.07 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.22 Total: -37.86 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.39 Total: -5.76 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.25 -9.56 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173836001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.170 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds