Wall clock time and date at job start Mon Mar 30 2020 07:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00394 * 2 1 4 4 H 1.48497 * 109.47514 * 270.00883 * 3 2 1 5 5 H 1.48502 * 109.46598 * 30.00402 * 3 2 1 6 6 H 1.48504 * 109.47246 * 150.00187 * 3 2 1 7 7 C 1.37880 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00192 * 179.97438 * 7 2 1 10 10 C 1.52990 * 109.47178 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47112 * 173.91574 * 10 9 7 12 12 C 1.46902 * 111.00082 * 188.32552 * 11 10 9 13 13 C 1.53007 * 109.47410 * 169.99513 * 12 11 10 14 14 H 1.09003 * 110.26766 * 60.63471 * 13 12 11 15 15 C 1.54939 * 110.31192 * 182.83454 * 13 12 11 16 16 C 1.55296 * 100.94263 * 155.36126 * 15 13 12 17 17 C 1.54382 * 102.25514 * 325.86429 * 16 15 13 18 18 O 1.43241 * 107.58537 * 21.35780 * 17 16 15 19 19 C 1.46900 * 111.00558 * 64.36949 * 11 10 9 20 20 C 1.54890 * 110.48394 * 33.68527 * 19 11 10 21 21 C 1.54887 * 102.74946 * 203.38097 * 20 19 11 22 22 C 1.54271 * 104.19499 * 37.94483 * 21 20 19 23 23 C 1.53874 * 106.59548 * 336.38712 * 22 21 20 24 24 H 0.97003 * 119.99776 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46723 * 60.00071 * 9 7 2 26 26 H 1.08999 * 109.47249 * 300.00422 * 9 7 2 27 27 H 1.08997 * 109.47633 * 53.90990 * 10 9 7 28 28 H 1.09003 * 109.47504 * 293.91058 * 10 9 7 29 29 H 1.08998 * 109.47301 * 289.99885 * 12 11 10 30 30 H 1.09004 * 109.47100 * 50.00066 * 12 11 10 31 31 H 1.09000 * 111.12406 * 273.28006 * 15 13 12 32 32 H 1.09005 * 111.12816 * 37.43674 * 15 13 12 33 33 H 1.09005 * 110.85231 * 207.67501 * 16 15 13 34 34 H 1.08999 * 111.02474 * 84.13811 * 16 15 13 35 35 H 1.08999 * 109.82959 * 261.84356 * 17 16 15 36 36 H 1.08998 * 109.82895 * 140.87012 * 17 16 15 37 37 H 1.08998 * 110.54136 * 156.30362 * 19 11 10 38 38 H 1.09008 * 110.75273 * 85.06892 * 20 19 11 39 39 H 1.08999 * 110.75793 * 321.69634 * 20 19 11 40 40 H 1.09001 * 110.48875 * 279.26645 * 21 20 19 41 41 H 1.09003 * 110.48600 * 156.62533 * 21 20 19 42 42 H 1.08994 * 110.03044 * 95.67581 * 22 21 20 43 43 H 1.09002 * 110.03042 * 217.10486 * 22 21 20 44 44 H 1.09009 * 110.02731 * 119.28562 * 23 22 21 45 45 H 1.08997 * 110.03358 * 240.66015 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6366 -0.0023 11 7 5.4829 -2.6392 -0.1496 12 6 5.9892 -4.0032 -0.3529 13 6 7.4661 -3.9454 -0.7485 14 1 8.0503 -3.4727 0.0411 15 6 8.0017 -5.3704 -1.0371 16 6 9.1868 -5.0526 -1.9891 17 6 8.6625 -3.8266 -2.7672 18 8 7.6238 -3.2282 -1.9830 19 6 6.1299 -2.0044 1.0064 20 6 5.3221 -2.2806 2.2989 21 6 5.7453 -1.1118 3.2228 22 6 5.8581 0.0990 2.2735 23 6 6.1027 -0.4686 0.8644 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.5714 -3.1804 -0.8329 28 1 3.7501 -3.1187 0.9370 29 1 5.8824 -4.5718 0.5709 30 1 5.4194 -4.4878 -1.1458 31 1 8.3500 -5.8517 -0.1233 32 1 7.2485 -5.9794 -1.5371 33 1 9.3774 -5.8875 -2.6635 34 1 10.0844 -4.7993 -1.4250 35 1 8.2627 -4.1434 -3.7305 36 1 9.4708 -3.1111 -2.9181 37 1 7.1548 -2.3594 1.1138 38 1 5.6055 -3.2391 2.7340 39 1 4.2510 -2.2472 2.0996 40 1 6.7081 -1.3227 3.6882 41 1 4.9847 -0.9314 3.9825 42 1 4.9319 0.6733 2.2893 43 1 6.6948 0.7308 2.5720 44 1 5.2949 -0.1696 0.1961 45 1 7.0575 -0.1115 0.4785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173836001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:16 Heat of formation + Delta-G solvation = -60.835824 kcal Electronic energy + Delta-G solvation = -21970.259138 eV Core-core repulsion = 18986.750513 eV Total energy + Delta-G solvation = -2983.508624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.96026 -39.84071 -36.16740 -35.13483 -33.08308 -32.64756 -30.61265 -29.64332 -28.33015 -26.82194 -24.65120 -22.71272 -22.37702 -21.84038 -21.12555 -20.36729 -18.76944 -17.81683 -17.33132 -16.80595 -16.45856 -16.22663 -15.56206 -15.43113 -15.17126 -14.83572 -14.69185 -14.19216 -13.95539 -13.82457 -13.40673 -13.21264 -12.77996 -12.66685 -12.53355 -12.32554 -12.19615 -12.05673 -11.95060 -11.86491 -11.81739 -11.70128 -11.63293 -11.56069 -11.31645 -11.14128 -10.74417 -10.68742 -10.29360 -8.96701 -8.28636 -6.30632 1.34841 1.35470 1.48411 2.36436 2.84734 3.08026 3.17290 3.63963 3.78292 3.81366 3.85518 4.02563 4.10943 4.22372 4.32639 4.37058 4.48612 4.54018 4.58703 4.62885 4.68078 4.72096 4.72933 4.81611 4.88508 4.91671 4.94148 4.97829 5.04253 5.07441 5.11995 5.12986 5.24556 5.28974 5.31212 5.42146 5.49835 5.55742 5.61748 5.70298 6.22652 6.24501 6.36516 6.49131 6.77068 7.33547 8.88276 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.005651 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.878983 B = 4953.319645 C = 5425.628244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.236 1.236 7 C -0.527 4.527 8 H 0.030 0.970 9 C -0.002 4.002 10 C 0.077 3.923 11 N -0.537 5.537 12 C 0.055 3.945 13 C 0.085 3.915 14 H 0.072 0.928 15 C -0.147 4.147 16 C -0.145 4.145 17 C 0.036 3.964 18 O -0.394 6.394 19 C 0.088 3.912 20 C -0.169 4.169 21 C -0.111 4.111 22 C -0.127 4.127 23 C -0.135 4.135 24 H 0.265 0.735 25 H 0.045 0.955 26 H 0.008 0.992 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.320 -8.897 2.259 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.160 1.160 7 C -0.566 4.566 8 H 0.049 0.951 9 C -0.040 4.040 10 C -0.050 4.050 11 N -0.259 5.259 12 C -0.073 4.073 13 C 0.028 3.972 14 H 0.089 0.911 15 C -0.185 4.185 16 C -0.183 4.183 17 C -0.040 4.040 18 O -0.314 6.314 19 C -0.020 4.020 20 C -0.208 4.208 21 C -0.149 4.149 22 C -0.165 4.165 23 C -0.173 4.173 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.181 -8.349 1.758 23.765 hybrid contribution -0.787 0.241 0.344 0.892 sum 21.394 -8.108 2.102 22.975 Atomic orbital electron populations 1.70062 1.08187 1.27946 1.53125 1.25863 0.95448 1.03072 0.94240 0.85845 0.80156 0.78746 0.79006 1.20013 1.20999 1.15959 1.21503 0.92241 0.92963 1.49885 0.95130 1.19741 0.92841 0.94457 0.96924 1.21941 0.86370 0.97964 0.98726 1.62098 1.04840 1.18719 1.40282 1.22298 0.95165 0.89537 1.00288 1.23111 0.94734 0.92097 0.87264 0.91052 1.23293 0.98121 0.95683 1.01360 1.23084 0.98464 0.98054 0.98667 1.23303 0.90368 0.95220 0.95134 1.88588 1.56482 1.55123 1.31200 1.22560 0.97634 0.94465 0.87337 1.23329 1.01399 0.99185 0.96893 1.22212 1.01735 0.93970 0.97003 1.22164 1.01118 0.98281 0.94929 1.22543 1.01981 0.95332 0.97455 0.92630 0.93742 0.97422 0.93552 0.94494 0.92499 0.91505 0.87979 0.90306 0.88465 0.89478 0.91681 0.91295 0.88707 0.90686 0.91613 0.89564 0.92133 0.94045 0.90169 0.91880 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 2 C 0.01 0.62 5.47 84.66 0.46 1.09 16 3 Si 0.94 46.19 27.47 68.60 1.88 48.07 16 4 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.24 -10.71 5.95 99.48 0.59 -10.11 16 7 C -0.53 -31.50 9.66 25.60 0.25 -31.25 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 9 C 0.00 -0.11 2.15 29.84 0.06 -0.05 16 10 C 0.08 3.25 4.37 86.30 0.38 3.63 16 11 N -0.54 -18.79 4.42 -864.72 -3.82 -22.61 16 12 C 0.06 1.53 4.67 86.31 0.40 1.94 16 13 C 0.09 2.00 3.33 31.26 0.10 2.10 16 14 H 0.07 1.59 6.34 -2.39 -0.02 1.57 16 15 C -0.15 -2.33 6.57 32.05 0.21 -2.12 16 16 C -0.15 -2.00 7.02 31.85 0.22 -1.78 16 17 C 0.04 0.73 7.79 72.45 0.56 1.29 16 18 O -0.39 -11.44 10.95 -148.98 -1.63 -13.07 16 19 C 0.09 2.71 2.69 45.99 0.12 2.84 16 20 C -0.17 -5.08 5.39 31.88 0.17 -4.91 16 21 C -0.11 -2.96 6.83 31.67 0.22 -2.74 16 22 C -0.13 -3.81 6.27 31.32 0.20 -3.62 16 23 C -0.14 -4.51 5.65 31.32 0.18 -4.34 16 24 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 25 H 0.04 2.11 3.12 -2.38 -0.01 2.11 16 26 H 0.01 0.39 6.91 -2.39 -0.02 0.37 16 27 H 0.05 2.06 7.96 -2.39 -0.02 2.04 16 28 H 0.04 1.53 5.72 -2.39 -0.01 1.52 16 29 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 30 H 0.07 1.98 7.95 -2.38 -0.02 1.96 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.28 8.06 -2.38 -0.02 1.27 16 33 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 2.48 5.94 -2.39 -0.01 2.46 16 38 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.07 2.46 4.42 -2.39 -0.01 2.45 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 1.44 7.24 -2.39 -0.02 1.42 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 2.57 4.45 -2.38 -0.01 2.56 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.31 328.75 1.11 -69.20 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.84 Total: 17.44 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 3.54 Total: -37.91 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -3.52 Total: -83.74 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.63 Total: -13.07 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.07 kcal Total: -70.31 1.11 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173836001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.362 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds