Wall clock time and date at job start Mon Mar 30 2020 06:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.29941 * 126.28776 * 90.02413 * 5 4 3 7 7 O 1.21300 * 110.25544 * 179.97438 * 6 5 4 8 8 C 1.33649 * 109.80688 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.54822 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46927 * 165.02681 * 9 8 7 11 11 C 1.52998 * 109.47166 * 285.02232 * 9 8 7 12 12 N 1.46898 * 109.47311 * 45.02344 * 9 8 7 13 13 C 1.46900 * 110.99842 * 56.04260 * 12 9 8 14 14 C 1.46892 * 110.99957 * 179.97438 * 12 9 8 15 15 C 1.50701 * 109.47069 * 170.00068 * 14 12 9 16 16 H 1.08000 * 120.00417 * 0.02562 * 15 14 12 17 17 C 1.37879 * 120.00091 * 179.97438 * 15 14 12 18 18 N 1.31516 * 120.00077 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00106 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47232 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47254 * 120.00311 * 19 17 15 22 22 H 1.48501 * 109.47329 * 240.00310 * 19 17 15 23 23 N 1.31134 * 106.89752 * 359.76531 * 8 7 6 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 28 28 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 30 30 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 33 33 H 1.09006 * 109.47294 * 60.00169 * 11 9 8 34 34 H 1.09001 * 109.47273 * 180.02562 * 11 9 8 35 35 H 1.09005 * 109.47442 * 300.00365 * 11 9 8 36 36 H 1.09000 * 109.46992 * 60.00060 * 13 12 9 37 37 H 1.08998 * 109.47081 * 180.02562 * 13 12 9 38 38 H 1.08995 * 109.47669 * 299.99998 * 13 12 9 39 39 H 1.09004 * 109.47332 * 289.99715 * 14 12 9 40 40 H 1.08997 * 109.47337 * 50.00175 * 14 12 9 41 41 H 0.96998 * 120.00047 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3285 3.5890 1.0471 7 8 4.7175 4.6879 0.7116 8 6 4.7467 4.7703 -0.6220 9 6 5.1690 5.9646 -1.4384 10 1 5.3419 5.6570 -2.4697 11 6 4.0660 7.0241 -1.4004 12 7 6.4067 6.5260 -0.8807 13 6 7.4635 5.5078 -0.8143 14 6 6.8496 7.6943 -1.6532 15 6 7.9689 8.3868 -0.9194 16 1 8.3168 7.9977 0.0261 17 6 8.5497 9.5165 -1.4555 18 7 8.1264 9.9901 -2.6071 19 14 9.9367 10.3754 -0.5455 20 1 10.2239 9.6496 0.7178 21 1 11.1537 10.3880 -1.3963 22 1 9.5354 11.7710 -0.2348 23 7 4.3420 3.6118 -1.0845 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.6764 1.9564 0.8900 31 1 3.9329 0.9289 0.8909 32 1 3.9336 0.9287 -0.8892 33 1 3.8929 7.3318 -0.3691 34 1 4.3712 7.8878 -1.9912 35 1 3.1475 6.6075 -1.8141 36 1 7.6703 5.1330 -1.8167 37 1 8.3683 5.9500 -0.3975 38 1 7.1358 4.6849 -0.1792 39 1 7.2029 7.3700 -2.6321 40 1 6.0154 8.3846 -1.7784 41 1 8.5347 10.7851 -2.9842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177190735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:25 Heat of formation + Delta-G solvation = 33.835184 kcal Electronic energy + Delta-G solvation = -20316.371090 eV Core-core repulsion = 17233.427366 eV Total energy + Delta-G solvation = -3082.943725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.62852 -39.16344 -37.75839 -36.09884 -34.98353 -33.73796 -31.87363 -30.87400 -29.43516 -26.39307 -26.08960 -25.80959 -24.11159 -22.99936 -22.06311 -20.96451 -19.18339 -18.68693 -18.14426 -17.06234 -16.60629 -16.42112 -16.15461 -15.60155 -15.45275 -14.89789 -14.68744 -14.24813 -14.04557 -13.64038 -13.55240 -13.41852 -13.29075 -13.02584 -12.79464 -12.77089 -12.67902 -12.41317 -12.40718 -12.25205 -12.06496 -12.04577 -11.88993 -11.81113 -11.49140 -11.30942 -10.90339 -10.56476 -9.22953 -8.18184 -6.25850 0.04850 1.13579 1.43569 1.45620 1.57710 1.74663 2.37244 2.49570 2.92839 3.15410 3.27313 3.74168 3.93199 3.98565 4.02864 4.08928 4.21971 4.28398 4.44068 4.49449 4.54131 4.68509 4.71372 4.75767 4.79078 4.83019 4.92797 4.97550 5.01887 5.05445 5.18156 5.19202 5.23726 5.29173 5.34352 5.44942 5.65497 6.01518 6.14938 6.45395 6.87610 7.10394 7.42605 8.92894 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.050895 B = 0.003329 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.015446 B = 8408.112225 C = 8634.835945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.108 4.108 4 C -0.026 4.026 5 C 0.171 3.829 6 N -0.409 5.409 7 O 0.072 5.928 8 C 0.214 3.786 9 C 0.168 3.832 10 H 0.083 0.917 11 C -0.139 4.139 12 N -0.539 5.539 13 C 0.042 3.958 14 C 0.204 3.796 15 C -0.522 4.522 16 H 0.061 0.939 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.279 1.279 23 N -0.499 5.499 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.048 0.952 39 H -0.027 1.027 40 H 0.035 0.965 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.894 -16.888 3.277 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.147 4.147 4 C -0.065 4.065 5 C -0.102 4.102 6 N -0.120 5.120 7 O 0.019 5.981 8 C -0.007 4.007 9 C 0.058 3.942 10 H 0.101 0.899 11 C -0.197 4.197 12 N -0.265 5.265 13 C -0.107 4.107 14 C 0.079 3.921 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.191 4.191 18 N -0.570 5.570 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.205 1.205 23 N -0.234 5.234 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.091 0.909 38 H 0.067 0.933 39 H -0.009 1.009 40 H 0.053 0.947 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.158 -17.171 4.153 21.445 hybrid contribution 1.130 0.723 -0.643 1.487 sum -11.028 -16.448 3.511 20.111 Atomic orbital electron populations 1.21779 0.95362 1.02292 1.01737 1.21486 0.96307 0.94554 1.03181 1.21541 0.92097 0.98991 1.02066 1.20231 0.96922 0.83490 1.05855 1.26541 0.99204 1.01474 0.82968 1.74624 1.19119 0.93359 1.24919 1.85347 1.60647 1.27094 1.25024 1.28777 0.93957 0.96032 0.81916 1.20230 0.93367 0.87485 0.93166 0.89949 1.21894 0.96195 0.97640 1.03938 1.62199 1.02939 1.07869 1.53462 1.22186 0.95812 0.93597 0.99080 1.19583 0.95517 0.86809 0.90179 1.21438 1.17524 1.10603 1.06460 0.92069 1.25767 0.99750 0.97818 0.95784 1.70053 1.43649 1.23952 1.19335 0.85419 0.78716 0.78302 0.78688 1.19110 1.20639 1.20465 1.71926 1.19692 1.01805 1.30019 0.93006 0.92915 0.91552 0.90760 0.90884 0.92148 0.92550 0.87810 0.87390 0.91325 0.90424 0.89820 0.96001 0.90921 0.93294 1.00888 0.94683 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.43 5.93 30.60 0.18 -1.25 16 3 C -0.11 -1.84 5.20 30.60 0.16 -1.68 16 4 C -0.03 -0.51 5.84 29.85 0.17 -0.33 16 5 C 0.17 4.94 7.47 138.47 1.03 5.98 16 6 N -0.41 -13.47 12.16 -60.31 -0.73 -14.20 16 7 O 0.07 2.57 11.10 74.78 0.83 3.40 16 8 C 0.21 7.23 5.70 88.38 0.50 7.73 16 9 C 0.17 5.87 2.62 44.17 0.12 5.99 16 10 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 11 C -0.14 -4.31 8.97 71.98 0.65 -3.66 16 12 N -0.54 -22.44 4.62 -906.07 -4.18 -26.62 16 13 C 0.04 1.63 9.07 127.69 1.16 2.79 16 14 C 0.20 10.10 4.54 85.56 0.39 10.49 16 15 C -0.52 -28.29 8.46 25.60 0.22 -28.07 16 16 H 0.06 3.31 7.12 -2.91 -0.02 3.29 16 17 C 0.01 0.40 5.46 84.65 0.46 0.86 16 18 N -0.93 -53.45 13.29 21.45 0.28 -53.16 16 19 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 N -0.50 -15.98 11.55 -303.18 -3.50 -19.48 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.08 2.59 6.20 -2.39 -0.01 2.58 16 35 H 0.08 2.13 8.14 -2.38 -0.02 2.12 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 3.00 6.76 -2.39 -0.02 2.99 16 38 H 0.05 1.78 6.81 -2.39 -0.02 1.76 16 39 H -0.03 -1.42 8.12 -2.38 -0.02 -1.44 16 40 H 0.04 1.79 5.83 -2.39 -0.01 1.78 16 41 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -61.23 337.73 1.47 -59.76 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.00 Total: 7.32 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.75 Total: -2.24 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -8.13 Total: -113.48 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.83 Total: 3.40 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -61.23 1.47 -59.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177190735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.593 kcal (2) G-P(sol) polarization free energy of solvation -61.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds