Wall clock time and date at job start Mon Mar 30 2020 06:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29949 * 126.28823 * 2 1 4 4 O 1.21300 * 110.24851 * 179.97438 * 3 2 1 5 5 C 1.33636 * 109.81610 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.55568 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47577 * 165.02201 * 6 5 4 8 8 N 1.46903 * 109.47047 * 45.02226 * 6 5 4 9 9 C 1.46901 * 111.00119 * 153.74861 * 8 6 5 10 10 C 1.52999 * 109.47151 * 174.95605 * 9 8 6 11 11 C 1.52991 * 109.47132 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.47429 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99351 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00242 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99802 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00144 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47482 * 89.99844 * 16 14 12 18 18 H 1.48494 * 109.47408 * 210.00079 * 16 14 12 19 19 H 1.48503 * 109.47255 * 329.99877 * 16 14 12 20 20 C 1.53001 * 109.47172 * 285.02664 * 6 5 4 21 21 C 1.52999 * 109.47130 * 299.54873 * 20 6 5 22 22 C 1.52997 * 109.47184 * 59.55001 * 20 6 5 23 23 N 1.31135 * 106.89859 * 0.22290 * 5 4 3 24 24 H 1.09000 * 109.47416 * 89.97364 * 1 2 3 25 25 H 1.09002 * 109.47440 * 209.97149 * 1 2 3 26 26 H 1.08998 * 109.47224 * 329.97577 * 1 2 3 27 27 H 1.00910 * 110.99385 * 29.79566 * 8 6 5 28 28 H 1.09005 * 109.46880 * 294.95133 * 9 8 6 29 29 H 1.08994 * 109.46864 * 54.95131 * 9 8 6 30 30 H 1.09001 * 109.47129 * 299.99973 * 10 9 8 31 31 H 1.09005 * 109.47205 * 59.99752 * 10 9 8 32 32 H 1.09005 * 109.47243 * 299.99213 * 11 10 9 33 33 H 1.08995 * 109.47452 * 59.99730 * 11 10 9 34 34 H 0.97004 * 119.99676 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.47242 * 179.54714 * 20 6 5 36 36 H 1.08994 * 109.47068 * 65.59016 * 21 20 6 37 37 H 1.09002 * 109.47305 * 185.59486 * 21 20 6 38 38 H 1.09000 * 109.46982 * 305.59037 * 21 20 6 39 39 H 1.09001 * 109.47589 * 60.00204 * 22 20 6 40 40 H 1.08998 * 109.47422 * 180.02562 * 22 20 6 41 41 H 1.09005 * 109.46796 * 299.99986 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6212 0.0003 6 6 4.7969 -1.4371 0.0003 7 1 4.5649 -2.4685 0.2657 8 7 5.7385 -0.8792 0.9801 9 6 6.6618 -1.9115 1.4699 10 6 7.7031 -1.2699 2.3890 11 6 8.6650 -2.3450 2.8986 12 6 9.6904 -1.7131 3.8044 13 1 9.6593 -0.6509 3.9970 14 6 10.6682 -2.4911 4.3873 15 7 11.5632 -1.9395 5.1774 16 14 10.7216 -4.3284 4.0548 17 1 11.5703 -4.5918 2.8650 18 1 11.2912 -5.0286 5.2339 19 1 9.3455 -4.8258 3.8010 20 6 5.4282 -1.3985 -1.3929 21 6 4.4519 -1.9898 -2.4118 22 6 5.7436 0.0503 -1.7700 23 7 2.3030 -1.0842 -0.0052 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 5.2472 -0.4411 1.7449 28 1 6.1028 -2.6653 2.0246 29 1 7.1638 -2.3809 0.6239 30 1 8.2620 -0.5162 1.8344 31 1 7.2010 -0.8005 3.2350 32 1 8.1064 -3.0990 3.4532 33 1 9.1671 -2.8140 2.0524 34 1 12.2509 -2.4870 5.5877 35 1 6.3489 -1.9821 -1.3908 36 1 3.5725 -1.3501 -2.4859 37 1 4.9376 -2.0541 -3.3855 38 1 4.1501 -2.9865 -2.0898 39 1 6.4392 0.4716 -1.0442 40 1 6.1930 0.0778 -2.7627 41 1 4.8229 0.6338 -1.7720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179871461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:02 Heat of formation + Delta-G solvation = 46.754461 kcal Electronic energy + Delta-G solvation = -20433.229531 eV Core-core repulsion = 17350.846028 eV Total energy + Delta-G solvation = -3082.383503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.76757 -38.40293 -36.22417 -35.06989 -33.11090 -32.79006 -31.21554 -29.40903 -27.63565 -27.24019 -25.23964 -23.87205 -22.40978 -22.16820 -20.15160 -19.77364 -18.36314 -17.40968 -16.79052 -16.13702 -15.54987 -15.07226 -14.53956 -14.19156 -14.04025 -13.92301 -13.88052 -13.45012 -13.00637 -12.67802 -12.56503 -12.40499 -12.23107 -12.09930 -11.74261 -11.66494 -11.30193 -11.26723 -11.05939 -11.00087 -10.88498 -10.75453 -10.11111 -9.95589 -9.75536 -9.61597 -9.18242 -8.54981 -8.52626 -6.03591 -4.01619 0.95571 2.00098 2.60508 3.28876 3.30561 3.38098 3.40814 3.77893 4.11436 4.45273 4.50632 4.66452 4.85388 5.03766 5.04890 5.10715 5.21419 5.28791 5.30167 5.41948 5.49196 5.55673 5.63238 5.65879 5.71504 5.79299 5.84991 5.95464 6.06862 6.17354 6.36911 6.45296 6.49445 6.86633 6.95204 7.21759 7.31533 7.44185 7.80033 8.00263 8.55118 9.02143 9.58792 11.10006 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.003570 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.708348 B = 7842.283292 C = 8116.853445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.162 3.838 3 N -0.388 5.388 4 O 0.093 5.907 5 C 0.193 3.807 6 C 0.182 3.818 7 H 0.090 0.910 8 N -0.677 5.677 9 C 0.056 3.944 10 C -0.098 4.098 11 C -0.013 4.013 12 C -0.519 4.519 13 H 0.072 0.928 14 C 0.065 3.935 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.266 1.266 20 C -0.085 4.085 21 C -0.149 4.149 22 C -0.144 4.144 23 N -0.482 5.482 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.346 0.654 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.792 0.808 -14.505 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.096 5.096 4 O 0.035 5.965 5 C -0.028 4.028 6 C 0.071 3.929 7 H 0.107 0.893 8 N -0.309 5.309 9 C -0.072 4.072 10 C -0.136 4.136 11 C -0.051 4.051 12 C -0.557 4.557 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.105 4.105 21 C -0.207 4.207 22 C -0.201 4.201 23 N -0.217 5.217 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.164 0.836 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.860 1.516 -14.864 24.853 hybrid contribution -0.331 -1.523 0.541 1.650 sum -20.192 -0.007 -14.323 24.756 Atomic orbital electron populations 1.20117 0.83036 1.04633 1.04169 1.25905 1.00571 0.83627 1.00966 1.74660 0.89660 1.24039 1.21282 1.85378 1.21794 1.24529 1.64801 1.28817 0.96568 0.82302 0.95069 1.20331 0.82182 0.94055 0.96370 0.89285 1.60682 1.19463 1.32281 1.18510 1.22306 0.94014 0.92164 0.98756 1.21429 0.95589 0.99527 0.97036 1.19542 0.94752 0.94730 0.96036 1.21144 1.10866 0.96664 1.27066 0.90990 1.25045 0.95296 0.98531 0.94732 1.69920 1.16590 1.35990 1.31840 0.86767 0.78644 0.85961 0.77816 1.20284 1.21465 1.19078 1.21207 0.99182 0.99011 0.91074 1.21882 0.98832 1.00870 0.99103 1.21816 1.02031 0.94594 1.01680 1.71917 0.99577 1.29496 1.20720 0.89451 0.89092 0.89531 0.83562 0.95088 0.90742 0.91624 0.92866 0.96834 0.96966 0.92764 0.88725 0.93461 0.91873 0.92231 0.90104 0.92830 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.00 0.38 -0.07 16 2 C 0.16 1.90 8.22 -156.37 -1.28 0.62 16 3 N -0.39 -5.13 12.16 30.90 0.38 -4.76 16 4 O 0.09 1.23 9.72 18.12 0.18 1.40 16 5 C 0.19 2.35 5.20 -13.06 -0.07 2.28 16 6 C 0.18 2.03 2.39 -68.86 -0.16 1.86 16 7 H 0.09 0.96 7.84 -51.93 -0.41 0.56 16 8 N -0.68 -8.46 5.53 -107.95 -0.60 -9.06 16 9 C 0.06 0.80 5.45 -3.82 -0.02 0.78 16 10 C -0.10 -1.82 5.46 -26.74 -0.15 -1.96 16 11 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 12 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 15 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 16 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 20 C -0.08 -0.86 2.84 -90.62 -0.26 -1.12 16 21 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 22 C -0.14 -1.52 8.69 37.16 0.32 -1.20 16 23 N -0.48 -6.04 11.55 -9.87 -0.11 -6.16 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.35 4.31 8.39 -39.29 -0.33 3.98 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.02 7.42 -51.93 -0.39 0.64 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 33 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.09 0.94 7.46 -51.93 -0.39 0.56 16 36 H 0.05 0.48 7.44 -51.93 -0.39 0.09 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.95 7.62 -51.93 -0.40 0.56 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.04 0.51 6.14 -51.93 -0.32 0.19 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -31.29 334.55 -7.24 -38.52 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.77 Total: -1.21 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.45 Total: -13.49 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.44 Total: -47.12 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.18 Total: 1.40 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.29 -7.24 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179871461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.277 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds