Wall clock time and date at job start Mon Mar 30 2020 06:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29949 * 126.28823 * 2 1 4 4 O 1.21300 * 110.24851 * 179.97438 * 3 2 1 5 5 C 1.33636 * 109.81610 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.55568 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47577 * 165.02201 * 6 5 4 8 8 N 1.46903 * 109.47047 * 45.02226 * 6 5 4 9 9 C 1.46901 * 111.00119 * 153.74861 * 8 6 5 10 10 C 1.52999 * 109.47151 * 174.95605 * 9 8 6 11 11 C 1.52991 * 109.47132 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.47429 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99351 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00242 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99802 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00144 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47482 * 89.99844 * 16 14 12 18 18 H 1.48494 * 109.47408 * 210.00079 * 16 14 12 19 19 H 1.48503 * 109.47255 * 329.99877 * 16 14 12 20 20 C 1.53001 * 109.47172 * 285.02664 * 6 5 4 21 21 C 1.52999 * 109.47130 * 299.54873 * 20 6 5 22 22 C 1.52997 * 109.47184 * 59.55001 * 20 6 5 23 23 N 1.31135 * 106.89859 * 0.22290 * 5 4 3 24 24 H 1.09000 * 109.47416 * 89.97364 * 1 2 3 25 25 H 1.09002 * 109.47440 * 209.97149 * 1 2 3 26 26 H 1.08998 * 109.47224 * 329.97577 * 1 2 3 27 27 H 1.00910 * 110.99385 * 29.79566 * 8 6 5 28 28 H 1.09005 * 109.46880 * 294.95133 * 9 8 6 29 29 H 1.08994 * 109.46864 * 54.95131 * 9 8 6 30 30 H 1.09001 * 109.47129 * 299.99973 * 10 9 8 31 31 H 1.09005 * 109.47205 * 59.99752 * 10 9 8 32 32 H 1.09005 * 109.47243 * 299.99213 * 11 10 9 33 33 H 1.08995 * 109.47452 * 59.99730 * 11 10 9 34 34 H 0.97004 * 119.99676 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.47242 * 179.54714 * 20 6 5 36 36 H 1.08994 * 109.47068 * 65.59016 * 21 20 6 37 37 H 1.09002 * 109.47305 * 185.59486 * 21 20 6 38 38 H 1.09000 * 109.46982 * 305.59037 * 21 20 6 39 39 H 1.09001 * 109.47589 * 60.00204 * 22 20 6 40 40 H 1.08998 * 109.47422 * 180.02562 * 22 20 6 41 41 H 1.09005 * 109.46796 * 299.99986 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 0.0005 5 6 3.5298 -0.6212 0.0003 6 6 4.7969 -1.4371 0.0003 7 1 4.5649 -2.4685 0.2657 8 7 5.7385 -0.8792 0.9801 9 6 6.6618 -1.9115 1.4699 10 6 7.7031 -1.2699 2.3890 11 6 8.6650 -2.3450 2.8986 12 6 9.6904 -1.7131 3.8044 13 1 9.6593 -0.6509 3.9970 14 6 10.6682 -2.4911 4.3873 15 7 11.5632 -1.9395 5.1774 16 14 10.7216 -4.3284 4.0548 17 1 11.5703 -4.5918 2.8650 18 1 11.2912 -5.0286 5.2339 19 1 9.3455 -4.8258 3.8010 20 6 5.4282 -1.3985 -1.3929 21 6 4.4519 -1.9898 -2.4118 22 6 5.7436 0.0503 -1.7700 23 7 2.3030 -1.0842 -0.0052 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 5.2472 -0.4411 1.7449 28 1 6.1028 -2.6653 2.0246 29 1 7.1638 -2.3809 0.6239 30 1 8.2620 -0.5162 1.8344 31 1 7.2010 -0.8005 3.2350 32 1 8.1064 -3.0990 3.4532 33 1 9.1671 -2.8140 2.0524 34 1 12.2509 -2.4870 5.5877 35 1 6.3489 -1.9821 -1.3908 36 1 3.5725 -1.3501 -2.4859 37 1 4.9376 -2.0541 -3.3855 38 1 4.1501 -2.9865 -2.0898 39 1 6.4392 0.4716 -1.0442 40 1 6.1930 0.0778 -2.7627 41 1 4.8229 0.6338 -1.7720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179871461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:02 Heat of formation + Delta-G solvation = 24.725915 kcal Electronic energy + Delta-G solvation = -20434.184760 eV Core-core repulsion = 17350.846028 eV Total energy + Delta-G solvation = -3083.338732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.68682 -39.35163 -37.12630 -36.44041 -34.79038 -33.73741 -32.86078 -30.14860 -29.07558 -28.03502 -26.59444 -24.76508 -23.79747 -23.17361 -21.79230 -20.63424 -19.30037 -18.88842 -18.31750 -17.20868 -16.54813 -16.40282 -15.82597 -15.59653 -15.01365 -14.84956 -14.73495 -14.50035 -14.39582 -13.91327 -13.57529 -13.52970 -13.32460 -13.16131 -12.92944 -12.76449 -12.53422 -12.51028 -12.19428 -12.01942 -11.88124 -11.80493 -11.68497 -11.53729 -11.39056 -11.25581 -10.92506 -10.72704 -9.54463 -8.25926 -6.30201 0.02916 1.11555 1.39601 1.41766 1.53536 1.70283 2.39899 2.40753 2.96990 3.09891 3.18260 3.66491 3.83550 4.02867 4.21859 4.25511 4.32914 4.40043 4.47989 4.55116 4.61037 4.67445 4.74542 4.75878 4.84116 4.91943 4.98746 4.99556 5.05485 5.07879 5.16036 5.19913 5.37115 5.51674 5.56995 5.66361 5.70829 5.88179 6.17785 6.33982 6.79163 7.08586 7.34486 8.91311 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.003570 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.708348 B = 7842.283292 C = 8116.853445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.161 3.839 3 N -0.412 5.412 4 O 0.078 5.922 5 C 0.196 3.804 6 C 0.186 3.814 7 H 0.100 0.900 8 N -0.679 5.679 9 C 0.070 3.930 10 C -0.090 4.090 11 C -0.010 4.010 12 C -0.533 4.533 13 H 0.027 0.973 14 C -0.002 4.002 15 N -0.956 5.956 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.241 1.241 20 C -0.083 4.083 21 C -0.143 4.143 22 C -0.140 4.140 23 N -0.494 5.494 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.345 0.655 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.265 0.735 35 H 0.103 0.897 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.392 -1.411 -16.131 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.123 5.123 4 O 0.023 5.977 5 C -0.025 4.025 6 C 0.075 3.925 7 H 0.118 0.882 8 N -0.312 5.312 9 C -0.058 4.058 10 C -0.128 4.128 11 C -0.048 4.048 12 C -0.571 4.571 13 H 0.046 0.954 14 C -0.198 4.198 15 N -0.597 5.597 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.165 1.165 20 C -0.103 4.103 21 C -0.201 4.201 22 C -0.197 4.197 23 N -0.229 5.229 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.164 0.836 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.465 -0.692 -16.508 27.088 hybrid contribution 0.145 -0.708 1.069 1.290 sum -21.320 -1.400 -15.439 26.360 Atomic orbital electron populations 1.20353 0.80265 1.05763 1.05616 1.26681 1.02172 0.82992 0.99284 1.74659 0.89854 1.24933 1.22836 1.85354 1.22032 1.24986 1.65347 1.29002 0.96914 0.82112 0.94467 1.20412 0.81548 0.94158 0.96423 0.88210 1.60584 1.19973 1.31916 1.18687 1.22039 0.93331 0.92094 0.98385 1.21234 0.95881 0.98205 0.97485 1.19494 0.94275 0.95709 0.95345 1.21561 1.12465 0.95070 1.28002 0.95431 1.26108 0.94728 1.04557 0.94373 1.70093 1.17776 1.38332 1.33530 0.85584 0.80032 0.78641 0.77920 1.18983 1.21417 1.16461 1.21235 0.99689 0.98705 0.90634 1.21828 0.98058 1.00722 0.99447 1.21763 1.01186 0.94864 1.01924 1.71939 0.99778 1.29912 1.21294 0.87719 0.87862 0.88460 0.83630 0.94099 0.89352 0.92861 0.93842 0.96097 0.95729 0.92610 0.87904 0.94779 0.90573 0.91564 0.91594 0.91656 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.51 71.23 0.75 -0.04 16 2 C 0.16 3.58 8.22 138.46 1.14 4.71 16 3 N -0.41 -10.66 12.16 -60.32 -0.73 -11.39 16 4 O 0.08 2.01 9.72 74.90 0.73 2.74 16 5 C 0.20 4.53 5.20 88.38 0.46 4.99 16 6 C 0.19 3.78 2.39 44.17 0.11 3.88 16 7 H 0.10 1.87 7.84 -2.39 -0.02 1.85 16 8 N -0.68 -15.99 5.53 -495.45 -2.74 -18.73 16 9 C 0.07 1.84 5.45 86.30 0.47 2.31 16 10 C -0.09 -3.28 5.46 30.59 0.17 -3.12 16 11 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 12 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 13 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 14 C 0.00 -0.10 5.47 84.65 0.46 0.37 16 15 N -0.96 -60.59 13.96 21.45 0.30 -60.29 16 16 Si 0.96 43.60 27.47 68.60 1.88 45.49 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 20 C -0.08 -1.50 2.84 -10.79 -0.03 -1.53 16 21 C -0.14 -2.27 8.84 71.98 0.64 -1.63 16 22 C -0.14 -2.80 8.69 71.98 0.63 -2.18 16 23 N -0.49 -11.65 11.55 -303.20 -3.50 -15.16 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.35 8.31 8.39 -89.69 -0.75 7.56 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.09 2.13 7.42 -2.39 -0.02 2.11 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.02 0.90 7.20 -2.38 -0.02 0.89 16 33 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 34 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.10 1.74 7.46 -2.38 -0.02 1.72 16 36 H 0.03 0.63 7.44 -2.39 -0.02 0.61 16 37 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.51 7.62 -2.39 -0.02 1.50 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.03 0.78 6.14 -2.38 -0.01 0.76 16 Total: -1.00 -68.81 334.55 1.29 -67.52 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.20 Total: 12.85 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.15 Total: -23.02 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -6.68 Total: -105.58 kcal Atomic # 8 Polarization: 2.01 SS G_CDS: 0.73 Total: 2.74 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Total: -68.81 1.29 -67.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179871461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.248 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds