Wall clock time and date at job start Mon Mar 30 2020 06:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47132 * 2 1 4 4 C 1.50701 * 110.00948 * 294.72092 * 3 2 1 5 5 O 1.20822 * 119.99739 * 23.20361 * 4 3 2 6 6 O 1.34226 * 119.99602 * 203.20725 * 4 3 2 7 7 C 1.54319 * 109.88686 * 55.83700 * 3 2 1 8 8 C 1.55144 * 103.01979 * 141.69112 * 7 3 2 9 9 C 1.54910 * 101.65076 * 324.34262 * 8 7 3 10 10 N 1.47445 * 109.88678 * 173.60428 * 3 2 1 11 11 C 1.46898 * 111.00269 * 3.85183 * 10 3 2 12 12 C 1.53002 * 109.47171 * 169.05765 * 11 10 3 13 13 C 1.50700 * 115.54684 * 325.57888 * 12 11 10 14 14 H 1.07999 * 119.99893 * 358.81284 * 13 12 11 15 15 C 1.37872 * 119.99965 * 178.80556 * 13 12 11 16 16 N 1.31514 * 119.99999 * 2.96250 * 15 13 12 17 17 Si 1.86801 * 120.00374 * 182.96303 * 15 13 12 18 18 H 1.48499 * 109.46987 * 265.00905 * 17 15 13 19 19 H 1.48500 * 109.46970 * 25.00313 * 17 15 13 20 20 H 1.48496 * 109.47387 * 145.00608 * 17 15 13 21 21 C 1.52995 * 117.52181 * 111.28548 * 12 11 10 22 22 C 1.52999 * 60.00157 * 107.47678 * 21 12 11 23 23 H 1.09004 * 109.47016 * 309.14938 * 1 2 3 24 24 H 1.08994 * 109.47117 * 69.15695 * 1 2 3 25 25 H 1.09007 * 109.46816 * 189.15599 * 1 2 3 26 26 H 1.09001 * 109.47135 * 240.00023 * 2 1 3 27 27 H 1.08998 * 109.47289 * 120.00176 * 2 1 3 28 28 H 0.96700 * 116.99629 * 179.97438 * 6 4 3 29 29 H 1.09007 * 110.70120 * 260.07059 * 7 3 2 30 30 H 1.08994 * 110.70891 * 23.12633 * 7 3 2 31 31 H 1.08994 * 110.98871 * 82.43502 * 8 7 3 32 32 H 1.09003 * 110.98721 * 206.21196 * 8 7 3 33 33 H 1.08997 * 110.37043 * 278.24401 * 9 8 7 34 34 H 1.08994 * 110.37207 * 155.89928 * 9 8 7 35 35 H 1.08993 * 109.47290 * 49.05361 * 11 10 3 36 36 H 1.09001 * 109.47084 * 289.05302 * 11 10 3 37 37 H 0.97001 * 119.99925 * 179.97438 * 16 15 13 38 38 H 1.09000 * 117.49619 * 214.97074 * 21 12 11 39 39 H 1.09005 * 117.49904 * 359.97438 * 21 12 11 40 40 H 1.08995 * 117.49829 * 252.51000 * 22 21 12 41 41 H 1.09003 * 117.49648 * 107.48346 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6536 2.1261 -1.2863 5 8 0.7146 1.7188 -1.9284 6 8 2.3526 3.1873 -1.7185 7 6 1.4467 2.2091 1.2008 8 6 2.6287 3.1003 1.6651 9 6 3.8415 2.1727 1.4035 10 7 3.5063 1.4561 0.1545 11 6 4.0467 0.0902 0.1699 12 6 5.5716 0.1438 0.0563 13 6 6.1208 1.2557 -0.7999 14 1 5.4468 1.9360 -1.2991 15 6 7.4837 1.4045 -0.9457 16 7 8.3031 0.5417 -0.3854 17 14 8.1666 2.8316 -1.9390 18 1 8.4232 2.3868 -3.3324 19 1 7.1830 3.9440 -1.9478 20 1 9.4363 3.2982 -1.3266 21 6 6.3869 -0.2727 1.2821 22 6 6.3271 -1.1867 0.0566 23 1 -0.3633 0.6488 0.7970 24 1 -0.3633 0.3656 -0.9604 25 1 -0.3633 -1.0147 0.1635 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0673 3.5921 -2.5490 29 1 0.6018 2.8222 0.8871 30 1 1.1481 1.5185 1.9894 31 1 2.6937 4.0070 1.0637 32 1 2.5426 3.3422 2.7244 33 1 3.9633 1.4667 2.2250 34 1 4.7485 2.7623 1.2710 35 1 3.6392 -0.4713 -0.6707 36 1 3.7690 -0.3999 1.1031 37 1 9.2619 0.6462 -0.4883 38 1 7.3206 0.2577 1.4693 39 1 5.8370 -0.5845 2.1701 40 1 5.7379 -2.1000 0.1382 41 1 7.2215 -1.2576 -0.5625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215698536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:18 Heat of formation + Delta-G solvation = -43.156920 kcal Electronic energy + Delta-G solvation = -22247.813576 eV Core-core repulsion = 19129.238472 eV Total energy + Delta-G solvation = -3118.575104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69806 -38.50406 -36.26429 -35.80677 -32.89889 -31.95399 -30.93854 -28.06866 -25.87034 -25.02168 -23.31568 -22.80974 -21.02913 -20.53169 -19.39532 -18.51302 -17.60804 -16.43697 -15.94020 -15.43821 -15.05113 -14.78648 -14.29594 -14.09955 -13.64251 -13.33032 -13.16572 -12.88187 -12.35576 -11.98976 -11.94664 -11.52826 -11.33324 -11.24212 -10.99886 -10.95367 -10.83611 -10.79059 -10.59342 -10.50672 -10.46211 -10.04907 -9.90927 -9.78264 -9.34343 -8.70669 -8.27015 -7.94379 -7.64679 -5.83343 -3.84355 2.51835 3.35874 3.43224 3.43637 3.49369 4.32485 4.51638 4.63865 4.80166 4.98942 5.18974 5.32158 5.39755 5.48058 5.59943 5.69568 5.79871 5.83937 5.89234 5.96139 6.05077 6.07254 6.22463 6.27810 6.30957 6.42944 6.46241 6.54807 6.72279 6.74989 6.94691 7.05584 7.20745 7.32350 7.54080 7.66119 7.89000 8.17673 8.28724 8.34307 8.68823 9.17949 9.69938 11.13605 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.007356 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.885002 B = 3805.727164 C = 4273.392976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.121 4.121 3 C 0.104 3.896 4 C 0.508 3.492 5 O -0.531 6.531 6 O -0.489 6.489 7 C -0.123 4.123 8 C -0.133 4.133 9 C 0.060 3.940 10 N -0.484 5.484 11 C 0.093 3.907 12 C 0.023 3.977 13 C -0.445 4.445 14 H 0.076 0.924 15 C 0.050 3.950 16 N -0.888 5.888 17 Si 0.892 3.108 18 H -0.286 1.286 19 H -0.272 1.272 20 H -0.290 1.290 21 C -0.191 4.191 22 C -0.190 4.190 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.396 0.604 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.254 0.746 38 H 0.107 0.893 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.535 2.908 3.428 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.159 4.159 3 C 0.012 3.988 4 C 0.350 3.650 5 O -0.421 6.421 6 O -0.297 6.297 7 C -0.161 4.161 8 C -0.171 4.171 9 C -0.067 4.067 10 N -0.207 5.207 11 C -0.034 4.034 12 C 0.022 3.978 13 C -0.483 4.483 14 H 0.094 0.906 15 C -0.150 4.150 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.212 1.212 19 H -0.197 1.197 20 H -0.217 1.217 21 C -0.229 4.229 22 C -0.228 4.228 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.253 0.747 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.126 0.874 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.213 2.863 3.212 12.949 hybrid contribution 0.062 0.375 -0.383 0.539 sum -12.151 3.237 2.829 12.889 Atomic orbital electron populations 1.22078 0.95027 1.01149 1.03818 1.21952 0.96846 0.93792 1.03342 1.21527 0.92277 0.94713 0.90321 1.23445 0.78207 0.77124 0.86174 1.90588 1.29582 1.64586 1.57314 1.84732 1.58115 1.43669 1.43153 1.22810 0.98536 0.98618 0.96141 1.22818 0.94373 0.98959 1.00984 1.22956 0.98409 0.95775 0.89583 1.63417 1.03756 1.17318 1.36243 1.21964 0.96442 0.86967 0.97985 1.18982 0.86514 0.94748 0.97516 1.20702 0.90649 1.10873 1.26030 0.90555 1.25053 0.97365 0.96361 0.96204 1.70032 1.02645 1.35286 1.44836 0.86562 0.78290 0.83102 0.79952 1.21210 1.19684 1.21664 1.22848 1.04441 1.05897 0.89733 1.22842 1.04477 0.91939 1.03585 0.93114 0.89895 0.93174 0.90558 0.90474 0.74693 0.91128 0.90023 0.90369 0.90920 0.93897 0.88690 0.91720 0.96219 0.93526 0.87446 0.94547 0.94399 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.34 37.16 0.35 -1.74 16 2 C -0.12 -1.77 3.41 -26.73 -0.09 -1.86 16 3 C 0.10 1.62 0.86 -131.76 -0.11 1.50 16 4 C 0.51 8.33 7.01 36.01 0.25 8.58 16 5 O -0.53 -9.24 14.47 -18.75 -0.27 -9.51 16 6 O -0.49 -7.52 13.16 -39.25 -0.52 -8.04 16 7 C -0.12 -1.57 4.69 -24.91 -0.12 -1.69 16 8 C -0.13 -1.77 7.08 -24.59 -0.17 -1.95 16 9 C 0.06 1.02 6.07 -2.29 -0.01 1.00 16 10 N -0.48 -8.91 3.44 -217.07 -0.75 -9.65 16 11 C 0.09 1.87 3.80 -3.82 -0.01 1.86 16 12 C 0.02 0.56 1.99 -155.66 -0.31 0.25 16 13 C -0.44 -11.79 8.55 -34.44 -0.29 -12.08 16 14 H 0.08 2.07 7.24 -52.49 -0.38 1.69 16 15 C 0.05 1.34 5.27 -17.82 -0.09 1.25 16 16 N -0.89 -24.64 8.59 55.43 0.48 -24.16 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C -0.19 -4.64 9.30 -26.73 -0.25 -4.89 16 22 C -0.19 -4.68 9.38 -26.73 -0.25 -4.93 16 23 H 0.05 0.58 6.51 -51.93 -0.34 0.25 16 24 H 0.08 1.20 5.69 -51.93 -0.30 0.91 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.22 6.72 -51.93 -0.35 0.87 16 27 H 0.08 1.08 6.63 -51.93 -0.34 0.74 16 28 H 0.40 4.22 9.10 45.56 0.41 4.64 16 29 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 30 H 0.08 0.94 7.38 -51.93 -0.38 0.56 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.72 7.61 -51.93 -0.40 0.33 16 34 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 35 H 0.06 1.30 6.14 -51.93 -0.32 0.98 16 36 H 0.02 0.37 6.49 -51.93 -0.34 0.04 16 37 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.11 2.90 6.29 -51.93 -0.33 2.57 16 39 H 0.04 0.80 8.05 -51.93 -0.42 0.39 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.11 3.06 6.27 -51.93 -0.33 2.73 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -29.55 314.26 -7.92 -37.47 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.45 Total: 7.57 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -1.12 Total: -14.70 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: -0.27 Total: -33.82 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.79 Total: -17.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.55 -7.92 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215698536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.691 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds