Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47132 * 2 1 4 4 C 1.50701 * 110.00948 * 294.72092 * 3 2 1 5 5 O 1.20822 * 119.99739 * 23.20361 * 4 3 2 6 6 O 1.34226 * 119.99602 * 203.20725 * 4 3 2 7 7 C 1.54319 * 109.88686 * 55.83700 * 3 2 1 8 8 C 1.55144 * 103.01979 * 141.69112 * 7 3 2 9 9 C 1.54910 * 101.65076 * 324.34262 * 8 7 3 10 10 N 1.47445 * 109.88678 * 173.60428 * 3 2 1 11 11 C 1.46898 * 111.00269 * 3.85183 * 10 3 2 12 12 C 1.53002 * 109.47171 * 169.05765 * 11 10 3 13 13 C 1.50700 * 115.54684 * 325.57888 * 12 11 10 14 14 H 1.07999 * 119.99893 * 358.81284 * 13 12 11 15 15 C 1.37872 * 119.99965 * 178.80556 * 13 12 11 16 16 N 1.31514 * 119.99999 * 2.96250 * 15 13 12 17 17 Si 1.86801 * 120.00374 * 182.96303 * 15 13 12 18 18 H 1.48499 * 109.46987 * 265.00905 * 17 15 13 19 19 H 1.48500 * 109.46970 * 25.00313 * 17 15 13 20 20 H 1.48496 * 109.47387 * 145.00608 * 17 15 13 21 21 C 1.52995 * 117.52181 * 111.28548 * 12 11 10 22 22 C 1.52999 * 60.00157 * 107.47678 * 21 12 11 23 23 H 1.09004 * 109.47016 * 309.14938 * 1 2 3 24 24 H 1.08994 * 109.47117 * 69.15695 * 1 2 3 25 25 H 1.09007 * 109.46816 * 189.15599 * 1 2 3 26 26 H 1.09001 * 109.47135 * 240.00023 * 2 1 3 27 27 H 1.08998 * 109.47289 * 120.00176 * 2 1 3 28 28 H 0.96700 * 116.99629 * 179.97438 * 6 4 3 29 29 H 1.09007 * 110.70120 * 260.07059 * 7 3 2 30 30 H 1.08994 * 110.70891 * 23.12633 * 7 3 2 31 31 H 1.08994 * 110.98871 * 82.43502 * 8 7 3 32 32 H 1.09003 * 110.98721 * 206.21196 * 8 7 3 33 33 H 1.08997 * 110.37043 * 278.24401 * 9 8 7 34 34 H 1.08994 * 110.37207 * 155.89928 * 9 8 7 35 35 H 1.08993 * 109.47290 * 49.05361 * 11 10 3 36 36 H 1.09001 * 109.47084 * 289.05302 * 11 10 3 37 37 H 0.97001 * 119.99925 * 179.97438 * 16 15 13 38 38 H 1.09000 * 117.49619 * 214.97074 * 21 12 11 39 39 H 1.09005 * 117.49904 * 359.97438 * 21 12 11 40 40 H 1.08995 * 117.49829 * 252.51000 * 22 21 12 41 41 H 1.09003 * 117.49648 * 107.48346 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6536 2.1261 -1.2863 5 8 0.7146 1.7188 -1.9284 6 8 2.3526 3.1873 -1.7185 7 6 1.4467 2.2091 1.2008 8 6 2.6287 3.1003 1.6651 9 6 3.8415 2.1727 1.4035 10 7 3.5063 1.4561 0.1545 11 6 4.0467 0.0902 0.1699 12 6 5.5716 0.1438 0.0563 13 6 6.1208 1.2557 -0.7999 14 1 5.4468 1.9360 -1.2991 15 6 7.4837 1.4045 -0.9457 16 7 8.3031 0.5417 -0.3854 17 14 8.1666 2.8316 -1.9390 18 1 8.4232 2.3868 -3.3324 19 1 7.1830 3.9440 -1.9478 20 1 9.4363 3.2982 -1.3266 21 6 6.3869 -0.2727 1.2821 22 6 6.3271 -1.1867 0.0566 23 1 -0.3633 0.6488 0.7970 24 1 -0.3633 0.3656 -0.9604 25 1 -0.3633 -1.0147 0.1635 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0673 3.5921 -2.5490 29 1 0.6018 2.8222 0.8871 30 1 1.1481 1.5185 1.9894 31 1 2.6937 4.0070 1.0637 32 1 2.5426 3.3422 2.7244 33 1 3.9633 1.4667 2.2250 34 1 4.7485 2.7623 1.2710 35 1 3.6392 -0.4713 -0.6707 36 1 3.7690 -0.3999 1.1031 37 1 9.2619 0.6462 -0.4883 38 1 7.3206 0.2577 1.4693 39 1 5.8370 -0.5845 2.1701 40 1 5.7379 -2.1000 0.1382 41 1 7.2215 -1.2576 -0.5625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215698536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = -60.910330 kcal Electronic energy + Delta-G solvation = -22248.583421 eV Core-core repulsion = 19129.238472 eV Total energy + Delta-G solvation = -3119.344950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94109 -39.85372 -38.03170 -37.06572 -34.04313 -33.74683 -32.52593 -29.23290 -27.72940 -26.63702 -24.46129 -24.08286 -22.67513 -22.08663 -20.89496 -20.09086 -18.88502 -17.92081 -17.46083 -16.93557 -16.64684 -16.25611 -15.58112 -15.55659 -15.10276 -14.75915 -14.63345 -14.24703 -13.58948 -13.54485 -13.09814 -12.93814 -12.85115 -12.74403 -12.47141 -12.43851 -12.34558 -12.14963 -12.12267 -11.94411 -11.88270 -11.72959 -11.60852 -11.21650 -10.97811 -10.66473 -10.20845 -9.92798 -9.03607 -7.89818 -5.95624 1.26918 1.42928 1.46189 1.56867 2.30849 2.50964 2.97640 3.18656 3.51304 3.69773 3.85700 3.99138 4.25791 4.30760 4.39354 4.47029 4.49593 4.58071 4.61348 4.74503 4.78164 4.86009 4.91452 4.93653 5.08191 5.09763 5.13300 5.24195 5.29688 5.34032 5.35655 5.39506 5.48297 5.71938 5.83124 6.03655 6.21449 6.26248 6.31560 6.68397 7.09612 7.19162 7.60453 9.04668 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.007356 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.885002 B = 3805.727164 C = 4273.392976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.100 3.900 4 C 0.504 3.496 5 O -0.545 6.545 6 O -0.499 6.499 7 C -0.114 4.114 8 C -0.122 4.122 9 C 0.058 3.942 10 N -0.505 5.505 11 C 0.106 3.894 12 C 0.017 3.983 13 C -0.452 4.452 14 H 0.066 0.934 15 C 0.004 3.996 16 N -0.908 5.908 17 Si 0.947 3.053 18 H -0.287 1.287 19 H -0.268 1.268 20 H -0.290 1.290 21 C -0.184 4.184 22 C -0.196 4.196 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.414 0.586 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.251 0.749 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 3.373 4.390 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C 0.008 3.992 4 C 0.348 3.652 5 O -0.436 6.436 6 O -0.309 6.309 7 C -0.152 4.152 8 C -0.159 4.159 9 C -0.069 4.069 10 N -0.229 5.229 11 C -0.021 4.021 12 C 0.016 3.984 13 C -0.490 4.490 14 H 0.084 0.916 15 C -0.193 4.193 16 N -0.549 5.549 17 Si 0.775 3.225 18 H -0.213 1.213 19 H -0.193 1.193 20 H -0.217 1.217 21 C -0.222 4.222 22 C -0.234 4.234 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.274 0.726 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.158 3.345 4.161 15.131 hybrid contribution 0.687 0.244 -0.729 1.031 sum -13.471 3.589 3.432 14.357 Atomic orbital electron populations 1.21995 0.93461 1.02439 1.03395 1.21937 0.98146 0.92921 1.02749 1.21683 0.90549 0.95816 0.91165 1.23671 0.78005 0.77163 0.86406 1.90591 1.30249 1.65015 1.57758 1.84695 1.58192 1.43570 1.44462 1.22838 0.98432 0.98696 0.95273 1.22756 0.92605 0.97884 1.02704 1.22883 0.98827 0.96089 0.89086 1.63189 1.06018 1.16340 1.37345 1.21734 0.93476 0.88298 0.98625 1.19139 0.89112 0.93446 0.96683 1.20872 0.90607 1.11367 1.26126 0.91566 1.25681 0.97869 0.98365 0.97369 1.70183 1.02466 1.36400 1.45845 0.85702 0.77554 0.80770 0.78497 1.21318 1.19296 1.21651 1.22671 1.03466 1.05487 0.90559 1.22726 1.03884 0.93312 1.03493 0.91370 0.91769 0.91687 0.92612 0.89558 0.72618 0.89705 0.87893 0.90935 0.88083 0.93697 0.91989 0.92057 0.94606 0.93932 0.90508 0.92087 0.92067 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.34 71.98 0.67 -2.87 16 2 C -0.12 -3.22 3.41 30.59 0.10 -3.11 16 3 C 0.10 2.89 0.86 3.13 0.00 2.90 16 4 C 0.50 15.82 7.01 71.24 0.50 16.32 16 5 O -0.55 -18.29 14.47 21.98 0.32 -17.97 16 6 O -0.50 -14.78 13.16 -51.38 -0.68 -15.46 16 7 C -0.11 -2.52 4.69 31.78 0.15 -2.37 16 8 C -0.12 -2.89 7.08 31.98 0.23 -2.66 16 9 C 0.06 1.90 6.07 86.77 0.53 2.43 16 10 N -0.51 -17.99 3.44 -840.68 -2.89 -20.88 16 11 C 0.11 4.12 3.80 86.30 0.33 4.45 16 12 C 0.02 0.81 1.99 -52.93 -0.11 0.71 16 13 C -0.45 -24.22 8.55 25.60 0.22 -24.00 16 14 H 0.07 3.63 7.24 -2.91 -0.02 3.61 16 15 C 0.00 0.23 5.27 84.65 0.45 0.68 16 16 N -0.91 -51.55 8.59 21.45 0.18 -51.36 16 17 Si 0.95 44.42 29.54 68.60 2.03 46.44 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 C -0.18 -8.89 9.30 30.59 0.28 -8.60 16 22 C -0.20 -9.65 9.38 30.59 0.29 -9.36 16 23 H 0.07 1.31 6.51 -2.38 -0.02 1.29 16 24 H 0.06 1.74 5.69 -2.39 -0.01 1.72 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.06 1.72 6.72 -2.39 -0.02 1.70 16 27 H 0.09 2.15 6.63 -2.39 -0.02 2.14 16 28 H 0.41 8.37 9.10 -74.06 -0.67 7.69 16 29 H 0.08 1.68 7.82 -2.38 -0.02 1.66 16 30 H 0.10 1.87 7.38 -2.39 -0.02 1.86 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 1.43 7.61 -2.39 -0.02 1.41 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.06 2.41 6.14 -2.39 -0.01 2.39 16 36 H 0.04 1.27 6.49 -2.39 -0.02 1.25 16 37 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.08 4.22 6.29 -2.39 -0.02 4.20 16 39 H 0.06 2.61 8.05 -2.38 -0.02 2.59 16 40 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.08 4.47 6.27 -2.39 -0.01 4.46 16 Total: -1.00 -63.79 314.26 2.96 -60.82 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.36 Total: 23.91 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 3.64 Total: -25.50 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -2.71 Total: -72.25 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.36 Total: -33.43 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -63.79 2.96 -60.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215698536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.088 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds