Wall clock time and date at job start Mon Mar 30 2020 07:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99631 * 2 1 4 4 H 1.48504 * 109.47121 * 270.00034 * 3 2 1 5 5 H 1.48502 * 109.47153 * 29.99868 * 3 2 1 6 6 H 1.48495 * 109.47156 * 149.99822 * 3 2 1 7 7 C 1.37870 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00003 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00181 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47585 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47159 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46716 * 179.97438 * 11 10 9 13 13 C 1.46811 * 111.00085 * 66.05063 * 12 11 10 14 14 C 1.53106 * 109.69636 * 174.40962 * 13 12 11 15 15 C 1.53001 * 109.08948 * 58.95996 * 14 13 12 16 16 O 1.42905 * 109.49052 * 61.80344 * 15 14 13 17 17 C 1.52913 * 109.97577 * 182.14334 * 15 14 13 18 18 C 1.53144 * 109.22274 * 180.15194 * 17 15 14 19 19 C 1.52959 * 109.68398 * 300.24728 * 18 17 15 20 20 C 1.53060 * 109.65991 * 59.54448 * 19 18 17 21 21 C 1.52918 * 109.26796 * 300.19712 * 20 19 18 22 22 H 1.09001 * 109.45720 * 300.60195 * 21 20 19 23 23 C 1.46917 * 111.00136 * 301.58340 * 12 11 10 24 24 H 0.97003 * 120.00889 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47186 * 59.99548 * 9 7 2 26 26 H 1.08998 * 109.46866 * 299.99974 * 9 7 2 27 27 H 1.08995 * 109.46728 * 59.99527 * 10 9 7 28 28 H 1.08998 * 109.47000 * 299.99895 * 10 9 7 29 29 H 1.08997 * 109.46877 * 60.00036 * 11 10 9 30 30 H 1.08998 * 109.47163 * 299.99898 * 11 10 9 31 31 H 1.08999 * 109.43738 * 54.33549 * 13 12 11 32 32 H 1.09004 * 109.42966 * 294.47985 * 13 12 11 33 33 H 1.09002 * 109.53156 * 178.84376 * 14 13 12 34 34 H 1.08997 * 109.53450 * 299.07825 * 14 13 12 35 35 H 0.96705 * 113.99593 * 59.99232 * 16 15 14 36 36 H 1.09004 * 109.50319 * 300.10743 * 17 15 14 37 37 H 1.08995 * 109.50961 * 60.23856 * 17 15 14 38 38 H 1.08996 * 109.43421 * 180.17306 * 18 17 15 39 39 H 1.09009 * 109.38341 * 60.28496 * 18 17 15 40 40 H 1.09008 * 109.43721 * 299.48347 * 19 18 17 41 41 H 1.09001 * 109.41138 * 179.58673 * 19 18 17 42 42 H 1.08998 * 109.50935 * 180.26124 * 20 19 18 43 43 H 1.09004 * 109.50777 * 60.13195 * 20 19 18 44 44 H 1.09003 * 109.49267 * 65.80335 * 23 12 11 45 45 H 1.08994 * 109.51795 * 305.72430 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0413 -4.0213 0.0040 13 6 5.6921 -4.7044 -1.2477 14 6 6.3336 -6.0943 -1.2734 15 6 5.8352 -6.8977 -0.0704 16 8 4.4181 -7.0593 -0.1590 17 6 6.5047 -8.2723 -0.0466 18 6 5.9913 -9.0624 1.1606 19 6 6.3204 -8.3064 2.4489 20 6 5.6600 -6.9259 2.4190 21 6 6.1838 -6.1420 1.2149 22 1 7.2660 -6.0374 1.2927 23 6 5.5396 -4.7557 1.1733 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6586 -3.1508 -0.8874 28 1 3.6580 -3.1497 0.8925 29 1 5.9149 -2.1217 0.8918 30 1 5.9149 -2.1232 -0.8882 31 1 6.0567 -4.1210 -2.0932 32 1 4.6088 -4.8035 -1.3167 33 1 6.0559 -6.6069 -2.1944 34 1 7.4179 -5.9963 -1.2222 35 1 4.1242 -7.5245 -0.9543 36 1 6.2641 -8.8103 -0.9636 37 1 7.5850 -8.1497 0.0314 38 1 6.4688 -10.0419 1.1827 39 1 4.9114 -9.1869 1.0788 40 1 7.4008 -8.1900 2.5353 41 1 5.9467 -8.8688 3.3046 42 1 5.8999 -6.3876 3.3359 43 1 4.5793 -7.0411 2.3360 44 1 4.4570 -4.8597 1.1005 45 1 5.7923 -4.2097 2.0822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220290371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:14 Heat of formation + Delta-G solvation = -78.918363 kcal Electronic energy + Delta-G solvation = -21707.353754 eV Core-core repulsion = 18723.061012 eV Total energy + Delta-G solvation = -2984.292742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48727 -37.29306 -35.27804 -33.78342 -32.13436 -31.90140 -30.38811 -28.97492 -26.71084 -24.40443 -23.31133 -22.12866 -21.76216 -20.53749 -19.86280 -19.08572 -16.69229 -16.17016 -15.75772 -15.46615 -15.12553 -14.96584 -14.24700 -13.98657 -13.91249 -13.69508 -13.41319 -12.85611 -12.68798 -12.58667 -12.07027 -11.99179 -11.76996 -11.61744 -11.41460 -11.35656 -11.17276 -11.06022 -10.87112 -10.76028 -10.57876 -10.52106 -9.88041 -9.83688 -9.75193 -9.61281 -9.52681 -9.17856 -8.50441 -7.80921 -6.00834 -3.98491 3.32830 3.39996 3.44415 4.07096 4.31225 4.48263 4.52707 4.58393 4.66361 4.93779 5.02487 5.12517 5.25774 5.33058 5.35169 5.41472 5.45673 5.59115 5.60916 5.64173 5.66262 5.80149 5.82707 5.88498 5.90530 5.96387 6.05305 6.09877 6.11495 6.18501 6.19792 6.27598 6.31005 6.51337 6.57640 6.67827 6.93914 7.34029 7.36977 7.43202 7.50456 7.68891 7.83577 8.58734 9.04499 9.61932 11.12848 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.004075 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.255079 B = 6870.208343 C = 7010.944916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.135 4.135 11 C 0.052 3.948 12 N -0.540 5.540 13 C 0.056 3.944 14 C -0.140 4.140 15 C 0.137 3.863 16 O -0.549 6.549 17 C -0.142 4.142 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.064 4.064 22 H 0.081 0.919 23 C 0.059 3.941 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.010 0.990 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.370 0.630 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.867 -17.376 0.470 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.087 0.913 9 C -0.049 4.049 10 C -0.174 4.174 11 C -0.076 4.076 12 N -0.263 5.263 13 C -0.072 4.072 14 C -0.178 4.178 15 C 0.096 3.904 16 O -0.354 6.354 17 C -0.180 4.180 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.083 4.083 22 H 0.099 0.901 23 C -0.069 4.069 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.216 0.784 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.261 -16.921 1.076 23.493 hybrid contribution -0.561 0.633 -0.710 1.105 sum 15.700 -16.288 0.366 22.626 Atomic orbital electron populations 1.69923 1.06320 1.26805 1.51445 1.25047 0.94729 0.99184 0.94638 0.86761 0.80378 0.83588 0.78458 1.20350 1.21432 1.18981 1.21172 0.89659 0.94354 1.50455 0.91251 1.19504 0.97069 0.92235 0.96057 1.22043 0.94045 1.00150 1.01196 1.22321 0.95040 0.88180 1.02054 1.62200 1.59400 1.02704 1.02030 1.21967 0.99096 0.93674 0.92502 1.22253 1.01626 0.96254 0.97686 1.21156 0.81053 0.92947 0.95215 1.86606 1.21242 1.80621 1.46943 1.22208 1.00833 0.96369 0.98584 1.21458 1.01714 0.97738 0.94327 1.21503 1.00269 0.96241 0.97391 1.21492 1.01431 0.94951 0.97192 1.21100 1.00290 0.94007 0.92915 0.90059 1.22046 0.98663 0.92761 0.93443 0.92813 0.96715 0.97204 0.92880 0.92593 0.91212 0.91337 0.91291 0.93458 0.91669 0.90687 0.78354 0.92007 0.91279 0.92561 0.91337 0.92389 0.92176 0.92069 0.90874 0.92867 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.29 9.66 -34.44 -0.33 -15.62 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.14 -2.79 4.46 -26.73 -0.12 -2.91 16 11 C 0.05 0.88 5.36 -3.82 -0.02 0.85 16 12 N -0.54 -8.10 4.85 -234.67 -1.14 -9.24 16 13 C 0.06 0.77 4.92 -3.82 -0.02 0.75 16 14 C -0.14 -1.52 5.12 -26.68 -0.14 -1.65 16 15 C 0.14 1.46 0.57 -90.60 -0.05 1.41 16 16 O -0.55 -6.51 10.30 -35.23 -0.36 -6.88 16 17 C -0.14 -1.23 4.98 -26.70 -0.13 -1.37 16 18 C -0.11 -1.00 5.77 -26.68 -0.15 -1.16 16 19 C -0.12 -1.06 5.92 -26.72 -0.16 -1.22 16 20 C -0.11 -1.24 5.10 -26.74 -0.14 -1.38 16 21 C -0.06 -0.76 1.93 -90.63 -0.18 -0.94 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 23 C 0.06 0.86 4.03 -3.85 -0.02 0.84 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 27 H 0.05 1.12 6.67 -51.93 -0.35 0.78 16 28 H 0.06 1.20 6.51 -51.93 -0.34 0.86 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 31 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 0.74 6.33 -51.93 -0.33 0.42 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.37 3.18 9.05 45.56 0.41 3.59 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.66 7.66 -51.92 -0.40 0.26 16 40 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.93 7.63 -51.93 -0.40 0.53 16 44 H 0.05 0.91 6.18 -51.93 -0.32 0.59 16 45 H 0.07 1.01 8.12 -51.93 -0.42 0.58 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -31.76 331.42 -9.62 -41.37 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.56 Total: 0.94 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -1.66 Total: -20.92 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.36 Total: -37.08 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.36 Total: -6.88 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.76 -9.62 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220290371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.544 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds