Wall clock time and date at job start Mon Mar 30 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99631 * 2 1 4 4 H 1.48504 * 109.47121 * 270.00034 * 3 2 1 5 5 H 1.48502 * 109.47153 * 29.99868 * 3 2 1 6 6 H 1.48495 * 109.47156 * 149.99822 * 3 2 1 7 7 C 1.37870 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00003 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00181 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47585 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47159 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46716 * 179.97438 * 11 10 9 13 13 C 1.46811 * 111.00085 * 66.05063 * 12 11 10 14 14 C 1.53106 * 109.69636 * 174.40962 * 13 12 11 15 15 C 1.53001 * 109.08948 * 58.95996 * 14 13 12 16 16 O 1.42905 * 109.49052 * 61.80344 * 15 14 13 17 17 C 1.52913 * 109.97577 * 182.14334 * 15 14 13 18 18 C 1.53144 * 109.22274 * 180.15194 * 17 15 14 19 19 C 1.52959 * 109.68398 * 300.24728 * 18 17 15 20 20 C 1.53060 * 109.65991 * 59.54448 * 19 18 17 21 21 C 1.52918 * 109.26796 * 300.19712 * 20 19 18 22 22 H 1.09001 * 109.45720 * 300.60195 * 21 20 19 23 23 C 1.46917 * 111.00136 * 301.58340 * 12 11 10 24 24 H 0.97003 * 120.00889 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47186 * 59.99548 * 9 7 2 26 26 H 1.08998 * 109.46866 * 299.99974 * 9 7 2 27 27 H 1.08995 * 109.46728 * 59.99527 * 10 9 7 28 28 H 1.08998 * 109.47000 * 299.99895 * 10 9 7 29 29 H 1.08997 * 109.46877 * 60.00036 * 11 10 9 30 30 H 1.08998 * 109.47163 * 299.99898 * 11 10 9 31 31 H 1.08999 * 109.43738 * 54.33549 * 13 12 11 32 32 H 1.09004 * 109.42966 * 294.47985 * 13 12 11 33 33 H 1.09002 * 109.53156 * 178.84376 * 14 13 12 34 34 H 1.08997 * 109.53450 * 299.07825 * 14 13 12 35 35 H 0.96705 * 113.99593 * 59.99232 * 16 15 14 36 36 H 1.09004 * 109.50319 * 300.10743 * 17 15 14 37 37 H 1.08995 * 109.50961 * 60.23856 * 17 15 14 38 38 H 1.08996 * 109.43421 * 180.17306 * 18 17 15 39 39 H 1.09009 * 109.38341 * 60.28496 * 18 17 15 40 40 H 1.09008 * 109.43721 * 299.48347 * 19 18 17 41 41 H 1.09001 * 109.41138 * 179.58673 * 19 18 17 42 42 H 1.08998 * 109.50935 * 180.26124 * 20 19 18 43 43 H 1.09004 * 109.50777 * 60.13195 * 20 19 18 44 44 H 1.09003 * 109.49267 * 65.80335 * 23 12 11 45 45 H 1.08994 * 109.51795 * 305.72430 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5517 -2.6363 0.0022 12 7 6.0413 -4.0213 0.0040 13 6 5.6921 -4.7044 -1.2477 14 6 6.3336 -6.0943 -1.2734 15 6 5.8352 -6.8977 -0.0704 16 8 4.4181 -7.0593 -0.1590 17 6 6.5047 -8.2723 -0.0466 18 6 5.9913 -9.0624 1.1606 19 6 6.3204 -8.3064 2.4489 20 6 5.6600 -6.9259 2.4190 21 6 6.1838 -6.1420 1.2149 22 1 7.2660 -6.0374 1.2927 23 6 5.5396 -4.7557 1.1733 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6586 -3.1508 -0.8874 28 1 3.6580 -3.1497 0.8925 29 1 5.9149 -2.1217 0.8918 30 1 5.9149 -2.1232 -0.8882 31 1 6.0567 -4.1210 -2.0932 32 1 4.6088 -4.8035 -1.3167 33 1 6.0559 -6.6069 -2.1944 34 1 7.4179 -5.9963 -1.2222 35 1 4.1242 -7.5245 -0.9543 36 1 6.2641 -8.8103 -0.9636 37 1 7.5850 -8.1497 0.0314 38 1 6.4688 -10.0419 1.1827 39 1 4.9114 -9.1869 1.0788 40 1 7.4008 -8.1900 2.5353 41 1 5.9467 -8.8688 3.3046 42 1 5.8999 -6.3876 3.3359 43 1 4.5793 -7.0411 2.3360 44 1 4.4570 -4.8597 1.1005 45 1 5.7923 -4.2097 2.0822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220290371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:13 Heat of formation + Delta-G solvation = -100.951631 kcal Electronic energy + Delta-G solvation = -21708.309188 eV Core-core repulsion = 18723.061012 eV Total energy + Delta-G solvation = -2985.248176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.43189 -38.48956 -36.13938 -35.65234 -33.88968 -32.81812 -31.83035 -29.89431 -28.37849 -25.78872 -24.37686 -23.18339 -22.99584 -22.15623 -20.70539 -20.27786 -18.92217 -17.05328 -16.81254 -16.48481 -16.38924 -16.27415 -15.84071 -15.44223 -14.98188 -14.90165 -14.64720 -14.35625 -13.88442 -13.72267 -13.50239 -13.26432 -12.90167 -12.79759 -12.65328 -12.54815 -12.41872 -12.35998 -12.02708 -11.87560 -11.80173 -11.65828 -11.49732 -11.41763 -11.36570 -11.29261 -10.79226 -10.70419 -10.39671 -9.14906 -8.32546 -6.37808 1.33887 1.36552 1.49180 2.34303 2.98244 3.02448 3.39926 3.70952 3.74200 3.85042 4.01783 4.16286 4.18485 4.23549 4.31735 4.46158 4.49143 4.50789 4.54882 4.60879 4.68688 4.76196 4.78429 4.81857 4.92349 4.96805 5.00767 5.02800 5.04253 5.09175 5.14878 5.25819 5.31456 5.31856 5.36467 5.45569 5.47570 5.52649 5.62832 5.64126 6.11433 6.19828 6.26685 6.69799 6.96270 7.27017 8.84799 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.004075 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.255079 B = 6870.208343 C = 7010.944916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.537 4.537 8 H 0.021 0.979 9 C -0.006 4.006 10 C -0.122 4.122 11 C 0.060 3.940 12 N -0.531 5.531 13 C 0.052 3.948 14 C -0.133 4.133 15 C 0.135 3.865 16 O -0.572 6.572 17 C -0.135 4.135 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.062 4.062 22 H 0.092 0.908 23 C 0.060 3.940 24 H 0.267 0.733 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.382 0.618 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.019 0.981 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.085 -17.517 0.054 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.575 4.575 8 H 0.039 0.961 9 C -0.044 4.044 10 C -0.161 4.161 11 C -0.068 4.068 12 N -0.254 5.254 13 C -0.076 4.076 14 C -0.171 4.171 15 C 0.095 3.905 16 O -0.379 6.379 17 C -0.173 4.173 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.081 4.081 22 H 0.110 0.890 23 C -0.068 4.068 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.230 0.770 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.492 -17.095 0.651 25.935 hybrid contribution -1.694 0.606 -0.573 1.888 sum 17.799 -16.489 0.079 24.263 Atomic orbital electron populations 1.70086 1.08476 1.28297 1.52596 1.26114 0.95696 1.03839 0.93849 0.85555 0.79479 0.77591 0.79398 1.18862 1.20799 1.16753 1.21507 0.92423 0.92807 1.50742 0.96069 1.19449 0.93644 0.94765 0.96588 1.21875 0.97106 0.97414 0.99703 1.22216 0.91701 0.89916 1.02947 1.62292 1.58440 1.01906 1.02723 1.22060 0.97807 0.95733 0.91998 1.22234 1.01887 0.94252 0.98717 1.21220 0.80701 0.94214 0.94396 1.86592 1.22310 1.81068 1.47962 1.22150 1.01097 0.94772 0.99241 1.21457 1.01058 0.98552 0.94111 1.21496 1.00765 0.94813 0.98024 1.21459 1.00055 0.96413 0.96978 1.21109 1.00465 0.92375 0.94169 0.88970 1.22040 0.96850 0.94664 0.93228 0.92419 0.96061 0.96027 0.94280 0.94399 0.90514 0.90147 0.90696 0.96176 0.89654 0.89549 0.76951 0.90496 0.90145 0.90823 0.92717 0.91094 0.91630 0.91972 0.93365 0.96293 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.01 13.96 21.44 0.30 -61.71 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.96 45.45 27.47 68.60 1.88 47.33 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.24 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.54 -32.79 9.66 25.60 0.25 -32.54 16 8 H 0.02 1.44 7.99 -2.91 -0.02 1.41 16 9 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 10 C -0.12 -5.15 4.46 30.59 0.14 -5.02 16 11 C 0.06 1.99 5.36 86.30 0.46 2.45 16 12 N -0.53 -15.48 4.85 -896.37 -4.34 -19.82 16 13 C 0.05 1.39 4.92 86.36 0.42 1.82 16 14 C -0.13 -2.58 5.12 30.63 0.16 -2.42 16 15 C 0.14 2.68 0.57 -10.78 -0.01 2.68 16 16 O -0.57 -13.64 10.30 -148.98 -1.53 -15.18 16 17 C -0.13 -1.95 4.98 30.61 0.15 -1.80 16 18 C -0.11 -1.74 5.77 30.63 0.18 -1.56 16 19 C -0.11 -1.86 5.92 30.60 0.18 -1.67 16 20 C -0.11 -2.40 5.10 30.59 0.16 -2.24 16 21 C -0.06 -1.42 1.93 -10.80 -0.02 -1.44 16 22 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 23 C 0.06 1.77 4.03 86.28 0.35 2.12 16 24 H 0.27 16.07 8.31 -92.71 -0.77 15.29 16 25 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 26 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 27 H 0.04 1.73 6.67 -2.39 -0.02 1.71 16 28 H 0.04 1.71 6.51 -2.39 -0.02 1.69 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.08 2.49 8.06 -2.39 -0.02 2.47 16 31 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 32 H 0.02 0.65 6.33 -2.38 -0.02 0.63 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.38 6.48 9.05 -74.05 -0.67 5.81 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.99 7.66 -2.38 -0.02 0.97 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.27 7.63 -2.38 -0.02 1.25 16 44 H 0.02 0.68 6.18 -2.39 -0.01 0.67 16 45 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 Total: -1.00 -70.91 331.42 -0.48 -71.39 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.22 Total: 17.27 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 3.00 Total: -39.28 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -4.04 Total: -81.53 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.53 Total: -15.18 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -70.91 -0.48 -71.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220290371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.563 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds