Wall clock time and date at job start Mon Mar 30 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99731 * 2 1 4 4 H 1.48501 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46842 * 299.99832 * 3 2 1 6 6 H 1.48497 * 109.46956 * 60.00122 * 3 2 1 7 7 C 1.37871 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99564 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47431 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47718 * 179.97438 * 11 10 9 13 13 C 1.46833 * 110.99974 * 294.30649 * 12 11 10 14 14 C 1.53056 * 109.60349 * 174.30458 * 13 12 11 15 15 C 1.53253 * 109.14052 * 59.28312 * 14 13 12 16 16 O 1.42900 * 110.08390 * 181.75925 * 15 14 13 17 17 C 1.53040 * 109.10958 * 61.41961 * 15 14 13 18 18 C 1.52950 * 109.58833 * 181.23760 * 17 15 14 19 19 C 1.53029 * 109.41659 * 60.21294 * 18 17 15 20 20 C 1.52990 * 109.36113 * 299.76828 * 19 18 17 21 21 C 1.52848 * 109.61481 * 59.94358 * 20 19 18 22 22 H 1.08998 * 109.40309 * 180.58363 * 21 20 19 23 23 C 1.46879 * 111.00475 * 170.00149 * 12 11 10 24 24 H 0.97006 * 120.00504 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46989 * 60.00522 * 9 7 2 26 26 H 1.08996 * 109.47169 * 299.99747 * 9 7 2 27 27 H 1.09002 * 109.47358 * 59.99756 * 10 9 7 28 28 H 1.09005 * 109.47427 * 300.00409 * 10 9 7 29 29 H 1.09010 * 109.46907 * 59.99910 * 11 10 9 30 30 H 1.09005 * 109.47221 * 300.00623 * 11 10 9 31 31 H 1.09000 * 109.44904 * 54.26452 * 13 12 11 32 32 H 1.09002 * 109.42426 * 294.32996 * 13 12 11 33 33 H 1.08996 * 109.52663 * 299.38166 * 14 13 12 34 34 H 1.09003 * 109.52496 * 179.17902 * 14 13 12 35 35 H 0.96701 * 113.99762 * 299.77930 * 16 15 14 36 36 H 1.09004 * 109.45082 * 61.20085 * 17 15 14 37 37 H 1.09004 * 109.43321 * 301.26584 * 17 15 14 38 38 H 1.09004 * 109.48190 * 300.23239 * 18 17 15 39 39 H 1.09006 * 109.48503 * 180.19602 * 18 17 15 40 40 H 1.08996 * 109.48751 * 179.80455 * 19 18 17 41 41 H 1.08994 * 109.50781 * 59.74763 * 19 18 17 42 42 H 1.09000 * 109.44788 * 299.90005 * 20 19 18 43 43 H 1.08999 * 109.42375 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.47563 * 65.65406 * 23 12 11 45 45 H 1.09007 * 109.47085 * 305.64169 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 7 2.4349 -6.1036 -0.0030 13 6 3.2038 -6.1364 -1.2535 14 6 4.2821 -7.2190 -1.1650 15 6 3.6130 -8.5759 -0.9207 16 8 4.6052 -9.5965 -0.7939 17 6 2.6909 -8.8991 -2.0985 18 6 1.9934 -10.2377 -1.8515 19 6 1.1628 -10.1496 -0.5692 20 6 2.0834 -9.8319 0.6106 21 6 2.7884 -8.4978 0.3667 22 1 3.4511 -8.2799 1.2042 23 6 1.7509 -7.3813 0.2356 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6247 -2.5570 0.8897 27 1 2.8727 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 0.8527 -5.0447 -0.8906 30 1 0.8546 -5.0449 0.8895 31 1 3.6752 -5.1670 -1.4153 32 1 2.5346 -6.3579 -2.0849 33 1 4.9587 -6.9928 -0.3409 34 1 4.8427 -7.2521 -2.0993 35 1 5.1648 -9.7003 -1.5757 36 1 3.2792 -8.9598 -3.0141 37 1 1.9425 -8.1130 -2.1995 38 1 2.7415 -11.0235 -1.7466 39 1 1.3398 -10.4679 -2.6929 40 1 0.6625 -11.1019 -0.3939 41 1 0.4177 -9.3608 -0.6718 42 1 2.8273 -10.6219 0.7135 43 1 1.4927 -9.7684 1.5245 44 1 1.0861 -7.5993 -0.6003 45 1 1.1693 -7.3159 1.1552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220290426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:17 Heat of formation + Delta-G solvation = -78.382108 kcal Electronic energy + Delta-G solvation = -21502.320884 eV Core-core repulsion = 18518.051396 eV Total energy + Delta-G solvation = -2984.269488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77795 -37.04576 -35.48481 -33.85533 -32.21705 -31.85620 -30.25779 -28.72797 -26.54030 -24.22633 -23.59837 -22.61193 -21.85166 -20.96896 -19.72965 -18.33480 -16.70778 -16.28129 -15.80497 -15.70515 -15.39259 -14.71992 -14.43589 -14.26076 -13.77009 -13.42952 -13.21531 -12.99454 -12.95048 -12.33500 -12.23436 -12.21134 -11.78916 -11.55139 -11.39190 -11.22551 -11.05655 -10.94938 -10.88607 -10.78345 -10.51916 -10.49701 -10.34751 -9.89623 -9.73043 -9.47895 -9.30364 -9.01598 -8.32794 -7.98838 -5.97934 -3.99813 3.32393 3.39752 3.44347 3.99526 4.12566 4.47907 4.48886 4.56872 4.66025 4.90712 4.97877 5.08665 5.22504 5.28024 5.35405 5.37297 5.38054 5.48998 5.51867 5.58086 5.64840 5.77107 5.79832 5.81955 5.90396 5.94482 6.00594 6.02471 6.11890 6.18689 6.22366 6.29429 6.33906 6.37472 6.72953 6.80554 7.14755 7.39492 7.42775 7.55410 7.71028 7.85842 8.02761 8.46310 9.07683 9.64221 11.13565 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038920 B = 0.003572 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.257189 B = 7836.573290 C = 8140.460168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.054 3.946 14 C -0.141 4.141 15 C 0.139 3.861 16 O -0.556 6.556 17 C -0.150 4.150 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.066 4.066 22 H 0.082 0.918 23 C 0.059 3.941 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.032 0.968 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.371 0.629 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -21.608 -3.501 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.143 4.143 11 C -0.070 4.070 12 N -0.264 5.264 13 C -0.074 4.074 14 C -0.179 4.179 15 C 0.099 3.901 16 O -0.361 6.361 17 C -0.187 4.187 18 C -0.151 4.151 19 C -0.160 4.160 20 C -0.148 4.148 21 C -0.085 4.085 22 H 0.101 0.899 23 C -0.069 4.069 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.217 0.783 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.024 -21.472 -2.525 22.196 hybrid contribution 0.055 1.006 -1.305 1.649 sum 5.079 -20.466 -3.830 21.432 Atomic orbital electron populations 1.69976 1.06059 1.26414 1.51191 1.25026 0.94835 0.99247 0.95417 0.86553 0.80165 0.83855 0.77543 1.19721 1.21073 1.21012 1.21293 0.93082 0.91039 1.50116 0.92638 1.19083 0.94055 0.91446 0.97070 1.21660 0.99137 0.92710 1.00754 1.22275 0.93613 0.90893 1.00194 1.61957 1.26959 1.02936 1.34499 1.22116 0.95288 0.99518 0.90486 1.22308 0.98668 0.94625 1.02291 1.21190 0.87519 0.86429 0.95012 1.86534 1.48820 1.57308 1.43433 1.22330 0.99898 0.98562 0.97953 1.21426 0.98931 0.97336 0.97375 1.21585 0.98053 1.01304 0.95050 1.21442 0.98563 0.97025 0.97724 1.20985 0.96305 0.94462 0.96741 0.89927 1.22204 0.94948 0.88756 1.01030 0.93118 0.96871 0.96592 0.92574 0.93506 0.95445 0.91161 0.89669 0.94963 0.90275 0.91644 0.78263 0.92029 0.90709 0.91546 0.92472 0.92208 0.91894 0.91112 0.92023 0.94490 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.20 5.08 -26.73 -0.14 -2.33 16 11 C 0.06 1.01 4.96 -3.83 -0.02 0.99 16 12 N -0.54 -8.15 4.66 -234.68 -1.09 -9.24 16 13 C 0.05 0.74 5.04 -3.83 -0.02 0.72 16 14 C -0.14 -1.62 5.26 -26.57 -0.14 -1.76 16 15 C 0.14 1.49 0.75 -90.43 -0.07 1.42 16 16 O -0.56 -5.69 11.79 -35.23 -0.42 -6.10 16 17 C -0.15 -1.46 4.34 -26.74 -0.12 -1.58 16 18 C -0.11 -1.03 5.79 -26.74 -0.15 -1.18 16 19 C -0.12 -1.14 5.66 -26.72 -0.15 -1.29 16 20 C -0.11 -1.11 5.30 -26.81 -0.14 -1.26 16 21 C -0.07 -0.77 2.30 -90.67 -0.21 -0.98 16 22 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 23 C 0.06 0.75 4.19 -3.85 -0.02 0.74 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.96 6.43 -51.93 -0.33 0.63 16 29 H 0.03 0.48 8.12 -51.92 -0.42 0.06 16 30 H 0.07 1.23 7.99 -51.93 -0.41 0.82 16 31 H 0.09 1.27 6.21 -51.93 -0.32 0.95 16 32 H 0.03 0.43 6.41 -51.93 -0.33 0.10 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.37 2.48 9.06 45.56 0.41 2.89 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.82 4.80 -51.93 -0.25 0.58 16 38 H 0.07 0.60 7.71 -51.93 -0.40 0.20 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.61 6.47 -51.93 -0.34 0.28 16 42 H 0.07 0.75 7.74 -51.93 -0.40 0.35 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.47 4.88 -51.93 -0.25 0.21 16 45 H 0.08 0.98 8.02 -51.92 -0.42 0.56 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -30.67 330.12 -9.78 -40.44 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.24 Total: -0.68 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -1.72 Total: -19.75 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.36 Total: -35.73 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.42 Total: -6.10 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.67 -9.78 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220290426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.938 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds