Wall clock time and date at job start Mon Mar 30 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99731 * 2 1 4 4 H 1.48501 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46842 * 299.99832 * 3 2 1 6 6 H 1.48497 * 109.46956 * 60.00122 * 3 2 1 7 7 C 1.37871 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99564 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47431 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47718 * 179.97438 * 11 10 9 13 13 C 1.46833 * 110.99974 * 294.30649 * 12 11 10 14 14 C 1.53056 * 109.60349 * 174.30458 * 13 12 11 15 15 C 1.53253 * 109.14052 * 59.28312 * 14 13 12 16 16 O 1.42900 * 110.08390 * 181.75925 * 15 14 13 17 17 C 1.53040 * 109.10958 * 61.41961 * 15 14 13 18 18 C 1.52950 * 109.58833 * 181.23760 * 17 15 14 19 19 C 1.53029 * 109.41659 * 60.21294 * 18 17 15 20 20 C 1.52990 * 109.36113 * 299.76828 * 19 18 17 21 21 C 1.52848 * 109.61481 * 59.94358 * 20 19 18 22 22 H 1.08998 * 109.40309 * 180.58363 * 21 20 19 23 23 C 1.46879 * 111.00475 * 170.00149 * 12 11 10 24 24 H 0.97006 * 120.00504 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46989 * 60.00522 * 9 7 2 26 26 H 1.08996 * 109.47169 * 299.99747 * 9 7 2 27 27 H 1.09002 * 109.47358 * 59.99756 * 10 9 7 28 28 H 1.09005 * 109.47427 * 300.00409 * 10 9 7 29 29 H 1.09010 * 109.46907 * 59.99910 * 11 10 9 30 30 H 1.09005 * 109.47221 * 300.00623 * 11 10 9 31 31 H 1.09000 * 109.44904 * 54.26452 * 13 12 11 32 32 H 1.09002 * 109.42426 * 294.32996 * 13 12 11 33 33 H 1.08996 * 109.52663 * 299.38166 * 14 13 12 34 34 H 1.09003 * 109.52496 * 179.17902 * 14 13 12 35 35 H 0.96701 * 113.99762 * 299.77930 * 16 15 14 36 36 H 1.09004 * 109.45082 * 61.20085 * 17 15 14 37 37 H 1.09004 * 109.43321 * 301.26584 * 17 15 14 38 38 H 1.09004 * 109.48190 * 300.23239 * 18 17 15 39 39 H 1.09006 * 109.48503 * 180.19602 * 18 17 15 40 40 H 1.08996 * 109.48751 * 179.80455 * 19 18 17 41 41 H 1.08994 * 109.50781 * 59.74763 * 19 18 17 42 42 H 1.09000 * 109.44788 * 299.90005 * 20 19 18 43 43 H 1.08999 * 109.42375 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.47563 * 65.65406 * 23 12 11 45 45 H 1.09007 * 109.47085 * 305.64169 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 7 2.4349 -6.1036 -0.0030 13 6 3.2038 -6.1364 -1.2535 14 6 4.2821 -7.2190 -1.1650 15 6 3.6130 -8.5759 -0.9207 16 8 4.6052 -9.5965 -0.7939 17 6 2.6909 -8.8991 -2.0985 18 6 1.9934 -10.2377 -1.8515 19 6 1.1628 -10.1496 -0.5692 20 6 2.0834 -9.8319 0.6106 21 6 2.7884 -8.4978 0.3667 22 1 3.4511 -8.2799 1.2042 23 6 1.7509 -7.3813 0.2356 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8904 26 1 0.6247 -2.5570 0.8897 27 1 2.8727 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 0.8527 -5.0447 -0.8906 30 1 0.8546 -5.0449 0.8895 31 1 3.6752 -5.1670 -1.4153 32 1 2.5346 -6.3579 -2.0849 33 1 4.9587 -6.9928 -0.3409 34 1 4.8427 -7.2521 -2.0993 35 1 5.1648 -9.7003 -1.5757 36 1 3.2792 -8.9598 -3.0141 37 1 1.9425 -8.1130 -2.1995 38 1 2.7415 -11.0235 -1.7466 39 1 1.3398 -10.4679 -2.6929 40 1 0.6625 -11.1019 -0.3939 41 1 0.4177 -9.3608 -0.6718 42 1 2.8273 -10.6219 0.7135 43 1 1.4927 -9.7684 1.5245 44 1 1.0861 -7.5993 -0.6003 45 1 1.1693 -7.3159 1.1552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220290426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:16 Heat of formation + Delta-G solvation = -98.568048 kcal Electronic energy + Delta-G solvation = -21503.196212 eV Core-core repulsion = 18518.051396 eV Total energy + Delta-G solvation = -2985.144816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69873 -38.22879 -36.31780 -35.70661 -33.82693 -32.81885 -31.66465 -29.62379 -28.29879 -25.52151 -24.86509 -23.45537 -23.25783 -22.09128 -21.25912 -19.22785 -18.48787 -17.53083 -16.83198 -16.64828 -16.52113 -16.40008 -15.84306 -15.59962 -14.82263 -14.46088 -14.39908 -14.24011 -13.88689 -13.81382 -13.52942 -13.31138 -13.16384 -12.94576 -12.64121 -12.55354 -12.45413 -12.33712 -12.07275 -12.03911 -11.84420 -11.65912 -11.43813 -11.34919 -11.26577 -11.03097 -10.72663 -10.56408 -10.43068 -9.19693 -8.20524 -6.31462 1.39648 1.40040 1.53642 2.40624 2.89364 3.12656 3.26100 3.63183 3.69725 3.84730 4.04581 4.06232 4.13949 4.26044 4.29526 4.39434 4.44970 4.48103 4.52075 4.59113 4.65934 4.71109 4.75622 4.84952 4.89303 4.95932 5.00878 5.02865 5.08859 5.12528 5.16093 5.23190 5.25680 5.34112 5.40904 5.43660 5.52256 5.56749 5.74033 5.85523 6.10293 6.20985 6.28001 6.85364 6.93581 7.37856 8.91620 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038920 B = 0.003572 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.257189 B = 7836.573290 C = 8140.460168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.089 4.089 11 C 0.069 3.931 12 N -0.547 5.547 13 C 0.052 3.948 14 C -0.135 4.135 15 C 0.144 3.856 16 O -0.564 6.564 17 C -0.147 4.147 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.105 4.105 21 C -0.066 4.066 22 H 0.064 0.936 23 C 0.061 3.939 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.388 0.612 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -22.556 -4.260 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.059 4.059 12 N -0.272 5.272 13 C -0.076 4.076 14 C -0.173 4.173 15 C 0.104 3.896 16 O -0.371 6.371 17 C -0.184 4.184 18 C -0.148 4.148 19 C -0.160 4.160 20 C -0.143 4.143 21 C -0.085 4.085 22 H 0.083 0.917 23 C -0.066 4.066 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.237 0.763 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.125 -22.444 -3.293 23.497 hybrid contribution -0.283 1.266 -1.063 1.677 sum 5.841 -21.178 -4.356 22.396 Atomic orbital electron populations 1.70100 1.07783 1.27708 1.51810 1.25977 0.95778 1.03348 0.94711 0.85398 0.79057 0.78746 0.77850 1.18665 1.20239 1.20307 1.21710 0.93480 0.92406 1.50374 0.92378 1.18978 0.94400 0.93082 0.94753 1.21396 0.97952 0.92752 1.00550 1.21989 0.93481 0.90370 1.00015 1.61901 1.26528 1.03173 1.35561 1.22151 0.95743 0.99674 0.89983 1.22271 0.97785 0.94309 1.02928 1.21044 0.87697 0.86114 0.94777 1.86503 1.49018 1.56769 1.44819 1.22293 0.99538 0.98527 0.98066 1.21420 0.99037 0.96886 0.97479 1.21594 0.97804 1.01749 0.94835 1.21398 0.98588 0.95844 0.98446 1.20949 0.95969 0.94728 0.96856 0.91739 1.22227 0.95350 0.87913 1.01147 0.92756 0.99080 0.98981 0.93197 0.93125 0.95665 0.91408 0.91223 0.94396 0.91674 0.89388 0.76307 0.90464 0.92005 0.91239 0.91498 0.90962 0.92463 0.91308 0.91656 0.93873 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.44 0.28 -57.24 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.09 -3.80 5.08 30.59 0.16 -3.64 16 11 C 0.07 2.46 4.96 86.30 0.43 2.89 16 12 N -0.55 -16.44 4.66 -896.39 -4.17 -20.62 16 13 C 0.05 1.40 5.04 86.33 0.43 1.83 16 14 C -0.13 -2.90 5.26 30.70 0.16 -2.74 16 15 C 0.14 2.83 0.75 -10.67 -0.01 2.82 16 16 O -0.56 -10.22 11.79 -148.98 -1.76 -11.98 16 17 C -0.15 -2.52 4.34 30.59 0.13 -2.38 16 18 C -0.11 -1.72 5.79 30.59 0.18 -1.55 16 19 C -0.12 -2.03 5.66 30.60 0.17 -1.86 16 20 C -0.10 -1.97 5.30 30.54 0.16 -1.81 16 21 C -0.07 -1.48 2.30 -10.83 -0.02 -1.50 16 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 23 C 0.06 1.53 4.19 86.30 0.36 1.90 16 24 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 2.11 6.43 -2.38 -0.02 2.10 16 29 H 0.03 0.90 8.12 -2.38 -0.02 0.88 16 30 H 0.07 2.43 7.99 -2.38 -0.02 2.41 16 31 H 0.07 2.07 6.21 -2.39 -0.01 2.05 16 32 H 0.04 0.98 6.41 -2.39 -0.02 0.96 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.39 4.06 9.06 -74.06 -0.67 3.39 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.24 4.80 -2.39 -0.01 1.23 16 38 H 0.07 1.06 7.71 -2.38 -0.02 1.04 16 39 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.02 6.47 -2.39 -0.02 1.01 16 42 H 0.07 1.34 7.74 -2.39 -0.02 1.32 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 44 H 0.04 1.05 4.88 -2.39 -0.01 1.04 16 45 H 0.07 1.89 8.02 -2.38 -0.02 1.88 16 Total: -1.00 -65.68 330.12 -0.34 -66.02 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.28 Total: 12.35 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 3.00 Total: -35.42 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -3.89 Total: -77.85 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.76 Total: -11.98 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.68 -0.34 -66.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220290426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.551 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds