Wall clock time and date at job start Mon Mar 30 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00053 * 2 1 4 4 H 1.48496 * 109.47132 * 269.99639 * 3 2 1 5 5 H 1.48491 * 109.47172 * 30.00136 * 3 2 1 6 6 H 1.48503 * 109.46744 * 149.99603 * 3 2 1 7 7 C 1.37875 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00241 * 359.72266 * 7 2 1 9 9 C 1.50699 * 119.99935 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.47090 * 174.20435 * 9 7 2 11 11 C 1.46854 * 110.99661 * 303.42653 * 10 9 7 12 12 H 1.09001 * 109.46029 * 65.73098 * 11 10 9 13 13 C 1.50698 * 109.46115 * 305.77424 * 11 10 9 14 14 O 1.20826 * 119.99985 * 332.62715 * 13 11 10 15 15 O 1.34229 * 119.99922 * 152.62330 * 13 11 10 16 16 C 1.53036 * 109.54975 * 185.75106 * 11 10 9 17 17 C 1.53127 * 109.29080 * 300.88277 * 16 11 10 18 18 C 1.53160 * 109.11205 * 57.70032 * 17 16 11 19 19 H 1.08995 * 109.77729 * 182.08820 * 18 17 16 20 20 C 1.53014 * 109.30859 * 61.90996 * 18 17 16 21 21 C 1.52992 * 109.50574 * 180.51671 * 20 18 17 22 22 C 1.53006 * 109.47035 * 60.03305 * 21 20 18 23 23 C 1.52996 * 109.44098 * 299.96380 * 22 21 20 24 24 C 1.46830 * 111.00112 * 67.62044 * 10 9 7 25 25 H 1.09002 * 109.43537 * 293.97231 * 24 10 9 26 26 H 0.97008 * 119.99793 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47457 * 294.20321 * 9 7 2 28 28 H 1.08996 * 109.47140 * 54.20534 * 9 7 2 29 29 H 0.96701 * 117.00091 * 179.97438 * 15 13 11 30 30 H 1.08997 * 109.50718 * 180.94002 * 16 11 10 31 31 H 1.09004 * 109.50232 * 60.82772 * 16 11 10 32 32 H 1.09002 * 109.53355 * 297.80981 * 17 16 11 33 33 H 1.08995 * 109.59006 * 177.62457 * 17 16 11 34 34 H 1.08997 * 109.46789 * 60.50591 * 20 18 17 35 35 H 1.08998 * 109.46522 * 300.51890 * 20 18 17 36 36 H 1.09003 * 109.46729 * 300.03920 * 21 20 18 37 37 H 1.08998 * 109.46902 * 180.02562 * 21 20 18 38 38 H 1.08997 * 109.47533 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.48180 * 59.96008 * 22 21 20 40 40 H 1.09001 * 109.46774 * 300.00043 * 23 22 21 41 41 H 1.09001 * 109.46672 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0055 9 6 3.5114 -1.1941 0.0011 10 7 4.0010 -2.5720 0.1415 11 6 3.4639 -3.2002 1.3553 12 1 2.3839 -3.3120 1.2589 13 6 3.7740 -2.3336 2.5485 14 8 4.7417 -1.6103 2.5346 15 8 2.9750 -2.3651 3.6267 16 6 4.1039 -4.5773 1.5454 17 6 3.8045 -5.4476 0.3216 18 6 4.3345 -4.7475 -0.9333 19 1 4.0942 -5.3405 -1.8157 20 6 5.8522 -4.5884 -0.8211 21 6 6.3848 -3.8778 -2.0669 22 6 5.7356 -2.4972 -2.1834 23 6 4.2181 -2.6560 -2.2968 24 6 3.6848 -3.3670 -1.0518 25 1 2.6041 -3.4823 -1.1349 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.7730 -0.9361 28 1 3.8745 -0.5929 0.8346 29 1 3.2147 -1.7918 4.3676 30 1 3.6924 -5.0499 2.4373 31 1 5.1824 -4.4651 1.6571 32 1 2.7278 -5.5915 0.2313 33 1 4.2935 -6.4153 0.4329 34 1 6.3153 -5.5715 -0.7378 35 1 6.0911 -3.9982 0.0636 36 1 6.1454 -4.4676 -2.9518 37 1 7.4659 -3.7652 -1.9866 38 1 6.1153 -1.9907 -3.0707 39 1 5.9741 -1.9075 -1.2982 40 1 3.9797 -3.2458 -3.1820 41 1 3.7552 -1.6727 -2.3803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227224715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:44 Heat of formation + Delta-G solvation = -99.510889 kcal Electronic energy + Delta-G solvation = -22690.463318 eV Core-core repulsion = 19569.444522 eV Total energy + Delta-G solvation = -3121.018796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41905 -38.95420 -35.66204 -34.90359 -34.14753 -32.16645 -30.10577 -29.12510 -27.39043 -25.00252 -23.21401 -22.73229 -21.25673 -20.15334 -20.02441 -18.02171 -17.31331 -16.80478 -15.88030 -15.34693 -15.17159 -14.92159 -14.29656 -14.19737 -13.62879 -13.48060 -13.08979 -12.64482 -12.47615 -12.19213 -12.01531 -11.95544 -11.69662 -11.32468 -11.07866 -11.01539 -10.82233 -10.78478 -10.58915 -10.39090 -10.30570 -10.08010 -9.88309 -9.67347 -9.54254 -9.42511 -9.17343 -8.60076 -7.23053 -6.14053 -4.14120 2.89426 3.26108 3.34042 3.42231 3.57955 4.37998 4.75578 5.01277 5.10380 5.16144 5.20344 5.38016 5.43163 5.59404 5.73602 5.78400 5.87974 5.92607 5.96688 6.05193 6.06564 6.11773 6.16580 6.19320 6.29960 6.37232 6.44234 6.49881 6.70818 6.75226 6.79878 6.86028 6.89381 7.01782 7.06195 7.22154 7.51684 7.93112 8.02980 8.38533 8.59872 8.86816 9.49416 10.98348 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.009431 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.945870 B = 2968.211928 C = 3715.696567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.077 3.923 3 Si 0.869 3.131 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.136 3.864 10 N -0.503 5.503 11 C 0.105 3.895 12 H 0.083 0.917 13 C 0.497 3.503 14 O -0.507 6.507 15 O -0.519 6.519 16 C -0.109 4.109 17 C -0.111 4.111 18 C -0.083 4.083 19 H 0.067 0.933 20 C -0.107 4.107 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.110 4.110 24 C 0.100 3.900 25 H 0.051 0.949 26 H 0.263 0.737 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.400 0.600 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.121 -9.442 0.339 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.126 4.126 3 Si 0.696 3.304 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.010 3.990 10 N -0.229 5.229 11 C -0.005 4.005 12 H 0.101 0.899 13 C 0.338 3.662 14 O -0.394 6.394 15 O -0.329 6.329 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.102 4.102 19 H 0.086 0.914 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.008 4.008 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.257 0.743 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.641 -9.356 0.051 13.435 hybrid contribution -0.607 1.464 0.393 1.633 sum 9.034 -7.893 0.444 12.005 Atomic orbital electron populations 1.69923 1.06288 1.26986 1.50134 1.24904 0.94614 0.99051 0.94026 0.86926 0.80828 0.83822 0.78851 1.20029 1.21281 1.18465 1.21669 0.90608 0.94617 1.52396 0.90758 1.20530 0.94429 0.85835 0.98243 1.62217 1.57803 1.03524 0.99316 1.20944 1.00527 0.91533 0.87486 0.89895 1.23292 0.79182 0.80694 0.83012 1.90632 1.28886 1.38986 1.80897 1.84566 1.55892 1.64990 1.27483 1.21613 1.01578 0.93106 0.98369 1.21573 1.01002 0.97812 0.94474 1.21266 0.95897 0.95898 0.97093 0.91433 1.21517 0.94473 0.99172 0.99267 1.21449 0.98902 0.96794 0.97733 1.21444 0.95318 0.96755 1.01567 1.21572 0.95772 1.01440 0.96024 1.21368 0.97773 0.91546 0.90119 0.93155 0.92685 0.94636 0.93983 0.74268 0.91502 0.90723 0.91876 0.91862 0.93529 0.90261 0.93131 0.92991 0.93495 0.90547 0.92657 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 21.67 27.59 -169.99 -4.69 16.98 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.49 6.38 56.52 0.36 -6.13 16 7 C -0.55 -14.98 8.25 -34.44 -0.28 -15.27 16 8 H 0.07 2.16 6.11 -52.48 -0.32 1.84 16 9 C 0.14 3.24 3.28 -4.97 -0.02 3.23 16 10 N -0.50 -10.07 2.81 -221.60 -0.62 -10.70 16 11 C 0.11 2.01 1.87 -68.87 -0.13 1.88 16 12 H 0.08 1.77 6.58 -51.93 -0.34 1.43 16 13 C 0.50 9.93 6.52 36.00 0.23 10.17 16 14 O -0.51 -11.30 15.80 -18.75 -0.30 -11.60 16 15 O -0.52 -8.95 13.42 -39.26 -0.53 -9.47 16 16 C -0.11 -1.62 4.99 -26.65 -0.13 -1.76 16 17 C -0.11 -1.49 5.51 -26.58 -0.15 -1.64 16 18 C -0.08 -1.19 2.51 -90.51 -0.23 -1.42 16 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.11 -1.46 4.74 -26.73 -0.13 -1.59 16 21 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 22 C -0.11 -1.75 5.73 -26.73 -0.15 -1.90 16 23 C -0.11 -1.88 4.92 -26.75 -0.13 -2.01 16 24 C 0.10 1.80 1.71 -67.75 -0.12 1.68 16 25 H 0.05 1.03 7.03 -51.93 -0.37 0.66 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.04 0.85 5.46 -51.93 -0.28 0.57 16 28 H 0.04 1.10 4.68 -51.93 -0.24 0.86 16 29 H 0.40 5.00 9.10 45.56 0.41 5.42 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.12 6.54 -51.93 -0.34 0.78 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.24 5.94 -51.93 -0.31 0.93 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.35 7.52 -51.93 -0.39 0.96 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.48 6.16 -51.93 -0.32 1.16 16 LS Contribution 302.32 15.07 4.56 4.56 Total: -1.00 -31.27 302.32 -7.77 -39.04 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.48 Total: 5.47 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.48 Total: -8.17 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.15 Total: -36.80 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.82 Total: -21.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.69 Total: 16.98 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.27 -7.77 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227224715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.470 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds