Wall clock time and date at job start Mon Mar 30 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00053 * 2 1 4 4 H 1.48496 * 109.47132 * 269.99639 * 3 2 1 5 5 H 1.48491 * 109.47172 * 30.00136 * 3 2 1 6 6 H 1.48503 * 109.46744 * 149.99603 * 3 2 1 7 7 C 1.37875 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00241 * 359.72266 * 7 2 1 9 9 C 1.50699 * 119.99935 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.47090 * 174.20435 * 9 7 2 11 11 C 1.46854 * 110.99661 * 303.42653 * 10 9 7 12 12 H 1.09001 * 109.46029 * 65.73098 * 11 10 9 13 13 C 1.50698 * 109.46115 * 305.77424 * 11 10 9 14 14 O 1.20826 * 119.99985 * 332.62715 * 13 11 10 15 15 O 1.34229 * 119.99922 * 152.62330 * 13 11 10 16 16 C 1.53036 * 109.54975 * 185.75106 * 11 10 9 17 17 C 1.53127 * 109.29080 * 300.88277 * 16 11 10 18 18 C 1.53160 * 109.11205 * 57.70032 * 17 16 11 19 19 H 1.08995 * 109.77729 * 182.08820 * 18 17 16 20 20 C 1.53014 * 109.30859 * 61.90996 * 18 17 16 21 21 C 1.52992 * 109.50574 * 180.51671 * 20 18 17 22 22 C 1.53006 * 109.47035 * 60.03305 * 21 20 18 23 23 C 1.52996 * 109.44098 * 299.96380 * 22 21 20 24 24 C 1.46830 * 111.00112 * 67.62044 * 10 9 7 25 25 H 1.09002 * 109.43537 * 293.97231 * 24 10 9 26 26 H 0.97008 * 119.99793 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47457 * 294.20321 * 9 7 2 28 28 H 1.08996 * 109.47140 * 54.20534 * 9 7 2 29 29 H 0.96701 * 117.00091 * 179.97438 * 15 13 11 30 30 H 1.08997 * 109.50718 * 180.94002 * 16 11 10 31 31 H 1.09004 * 109.50232 * 60.82772 * 16 11 10 32 32 H 1.09002 * 109.53355 * 297.80981 * 17 16 11 33 33 H 1.08995 * 109.59006 * 177.62457 * 17 16 11 34 34 H 1.08997 * 109.46789 * 60.50591 * 20 18 17 35 35 H 1.08998 * 109.46522 * 300.51890 * 20 18 17 36 36 H 1.09003 * 109.46729 * 300.03920 * 21 20 18 37 37 H 1.08998 * 109.46902 * 180.02562 * 21 20 18 38 38 H 1.08997 * 109.47533 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.48180 * 59.96008 * 22 21 20 40 40 H 1.09001 * 109.46774 * 300.00043 * 23 22 21 41 41 H 1.09001 * 109.46672 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0055 9 6 3.5114 -1.1941 0.0011 10 7 4.0010 -2.5720 0.1415 11 6 3.4639 -3.2002 1.3553 12 1 2.3839 -3.3120 1.2589 13 6 3.7740 -2.3336 2.5485 14 8 4.7417 -1.6103 2.5346 15 8 2.9750 -2.3651 3.6267 16 6 4.1039 -4.5773 1.5454 17 6 3.8045 -5.4476 0.3216 18 6 4.3345 -4.7475 -0.9333 19 1 4.0942 -5.3405 -1.8157 20 6 5.8522 -4.5884 -0.8211 21 6 6.3848 -3.8778 -2.0669 22 6 5.7356 -2.4972 -2.1834 23 6 4.2181 -2.6560 -2.2968 24 6 3.6848 -3.3670 -1.0518 25 1 2.6041 -3.4823 -1.1349 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.7730 -0.9361 28 1 3.8745 -0.5929 0.8346 29 1 3.2147 -1.7918 4.3676 30 1 3.6924 -5.0499 2.4373 31 1 5.1824 -4.4651 1.6571 32 1 2.7278 -5.5915 0.2313 33 1 4.2935 -6.4153 0.4329 34 1 6.3153 -5.5715 -0.7378 35 1 6.0911 -3.9982 0.0636 36 1 6.1454 -4.4676 -2.9518 37 1 7.4659 -3.7652 -1.9866 38 1 6.1153 -1.9907 -3.0707 39 1 5.9741 -1.9075 -1.2982 40 1 3.9797 -3.2458 -3.1820 41 1 3.7552 -1.6727 -2.3803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227224715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:44 Heat of formation + Delta-G solvation = -120.277674 kcal Electronic energy + Delta-G solvation = -22691.363833 eV Core-core repulsion = 19569.444522 eV Total energy + Delta-G solvation = -3121.919311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90377 -40.40709 -37.16245 -36.40343 -35.64051 -34.17398 -31.40729 -30.54071 -29.14182 -26.56386 -24.59169 -24.31155 -22.61639 -21.70127 -21.34457 -19.70054 -18.90227 -18.55076 -17.47648 -16.89037 -16.71165 -16.25795 -16.14510 -15.68443 -14.95507 -14.88969 -14.65946 -14.24984 -14.03431 -13.64854 -13.43026 -13.34738 -13.20107 -12.85118 -12.76942 -12.50174 -12.43899 -12.22044 -12.00078 -11.95414 -11.78797 -11.72315 -11.55992 -11.20571 -10.98854 -10.80457 -10.73230 -10.52034 -8.94993 -8.36476 -6.39266 1.24701 1.28241 1.30139 1.40396 2.14787 2.26726 2.99016 3.21291 3.78540 3.91772 3.96793 4.09965 4.21921 4.38394 4.45837 4.49389 4.50525 4.66264 4.72780 4.78230 4.84627 4.88858 4.94423 5.03363 5.04637 5.11074 5.16211 5.18253 5.28223 5.31892 5.38282 5.50772 5.56991 5.57796 5.62439 5.67014 5.81687 6.07126 6.26509 6.40865 6.66011 7.11515 7.27506 8.79020 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.009431 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.945870 B = 2968.211928 C = 3715.696567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.023 3.977 3 Si 0.928 3.072 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.043 0.957 9 C 0.149 3.851 10 N -0.495 5.495 11 C 0.099 3.901 12 H 0.053 0.947 13 C 0.494 3.506 14 O -0.534 6.534 15 O -0.516 6.516 16 C -0.101 4.101 17 C -0.108 4.108 18 C -0.078 4.078 19 H 0.088 0.912 20 C -0.103 4.103 21 C -0.107 4.107 22 C -0.109 4.109 23 C -0.111 4.111 24 C 0.096 3.904 25 H 0.014 0.986 26 H 0.266 0.734 27 H 0.036 0.964 28 H 0.023 0.977 29 H 0.421 0.579 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.222 -11.040 -0.062 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.176 4.176 3 Si 0.753 3.247 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.061 0.939 9 C 0.022 3.978 10 N -0.220 5.220 11 C -0.011 4.011 12 H 0.071 0.929 13 C 0.337 3.663 14 O -0.423 6.423 15 O -0.329 6.329 16 C -0.139 4.139 17 C -0.146 4.146 18 C -0.096 4.096 19 H 0.106 0.894 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.012 4.012 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.281 0.719 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.744 -10.968 -0.334 16.073 hybrid contribution -1.329 1.908 0.554 2.390 sum 10.415 -9.061 0.219 13.806 Atomic orbital electron populations 1.70044 1.07790 1.27904 1.52074 1.25676 0.95325 1.02484 0.94128 0.85980 0.79362 0.79942 0.79427 1.18708 1.20701 1.18568 1.21825 0.92258 0.93247 1.50770 0.93919 1.20240 0.91953 0.88441 0.97192 1.62242 1.57025 1.02106 1.00663 1.21125 0.99119 0.93886 0.86938 0.92913 1.23510 0.78899 0.80247 0.83663 1.90615 1.30085 1.40026 1.81594 1.84521 1.55150 1.65425 1.27767 1.21640 1.01504 0.90545 1.00165 1.21608 1.01026 0.98902 0.93017 1.21279 0.96430 0.93349 0.98588 0.89373 1.21488 0.93562 1.00450 0.98514 1.21437 0.99490 0.95140 0.98359 1.21393 0.93976 0.98396 1.00911 1.21567 0.97008 0.99798 0.96460 1.21510 0.96209 0.93860 0.89590 0.96750 0.92537 0.94646 0.95946 0.71863 0.89616 0.90131 0.92572 0.88180 0.90500 0.92417 0.91226 0.91530 0.92148 0.93283 0.90551 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.10 13.96 21.45 0.30 -57.80 16 2 C 0.02 1.34 5.47 84.65 0.46 1.80 16 3 Si 0.93 45.64 27.59 68.60 1.89 47.54 16 4 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.26 -12.81 6.38 99.48 0.63 -12.17 16 7 C -0.54 -30.56 8.25 25.60 0.21 -30.35 16 8 H 0.04 2.64 6.11 -2.91 -0.02 2.62 16 9 C 0.15 7.34 3.28 85.56 0.28 7.62 16 10 N -0.50 -20.18 2.81 -855.00 -2.40 -22.58 16 11 C 0.10 3.85 1.87 44.19 0.08 3.93 16 12 H 0.05 2.36 6.58 -2.39 -0.02 2.35 16 13 C 0.49 19.90 6.52 71.24 0.46 20.37 16 14 O -0.53 -23.94 15.80 21.96 0.35 -23.59 16 15 O -0.52 -17.69 13.42 -51.41 -0.69 -18.38 16 16 C -0.10 -2.84 4.99 30.65 0.15 -2.68 16 17 C -0.11 -2.61 5.51 30.69 0.17 -2.44 16 18 C -0.08 -2.04 2.51 -10.72 -0.03 -2.07 16 19 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 20 C -0.10 -2.44 4.74 30.60 0.15 -2.30 16 21 C -0.11 -2.46 5.92 30.59 0.18 -2.28 16 22 C -0.11 -3.21 5.73 30.60 0.18 -3.03 16 23 C -0.11 -3.74 4.92 30.58 0.15 -3.59 16 24 C 0.10 3.46 1.71 44.93 0.08 3.54 16 25 H 0.01 0.62 7.03 -2.39 -0.02 0.60 16 26 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 27 H 0.04 1.75 5.46 -2.39 -0.01 1.74 16 28 H 0.02 1.20 4.68 -2.39 -0.01 1.19 16 29 H 0.42 10.22 9.10 -74.06 -0.67 9.55 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 2.22 6.54 -2.38 -0.02 2.20 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.65 5.94 -2.39 -0.01 1.64 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 1.71 7.52 -2.38 -0.02 1.69 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.64 6.16 -2.39 -0.01 1.63 16 Total: -1.00 -70.08 302.32 2.26 -67.82 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.29 Total: 18.47 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 2.53 Total: -11.47 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -2.10 Total: -80.38 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.34 Total: -41.98 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.89 Total: 47.54 kcal Total: -70.08 2.26 -67.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227224715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.458 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds