Wall clock time and date at job start Mon Mar 30 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99814 * 2 1 4 4 H 1.48501 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47085 * 299.99613 * 3 2 1 6 6 H 1.48501 * 109.46985 * 59.99531 * 3 2 1 7 7 C 1.37877 * 120.00532 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00204 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99606 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46736 * 177.28263 * 9 7 2 11 11 C 1.46870 * 111.00191 * 300.13735 * 10 9 7 12 12 H 1.08999 * 109.45258 * 65.66911 * 11 10 9 13 13 C 1.50710 * 109.44891 * 305.74745 * 11 10 9 14 14 O 1.20824 * 119.99976 * 330.83552 * 13 11 10 15 15 O 1.34228 * 120.00076 * 150.84175 * 13 11 10 16 16 C 1.53186 * 109.63414 * 185.71257 * 11 10 9 17 17 C 1.53145 * 109.23649 * 300.99251 * 16 11 10 18 18 C 1.53080 * 109.15055 * 57.56054 * 17 16 11 19 19 H 1.09001 * 109.49617 * 62.09178 * 18 17 16 20 20 C 1.52969 * 109.59797 * 182.21331 * 18 17 16 21 21 C 1.53025 * 109.39285 * 179.86377 * 20 18 17 22 22 C 1.52980 * 109.60089 * 300.19630 * 21 20 18 23 23 C 1.53032 * 109.53966 * 59.80378 * 22 21 20 24 24 C 1.46803 * 111.00157 * 64.26703 * 10 9 7 25 25 H 1.08998 * 109.44693 * 294.07269 * 24 10 9 26 26 H 0.96993 * 120.00262 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47165 * 57.28706 * 9 7 2 28 28 H 1.08991 * 109.46797 * 297.28196 * 9 7 2 29 29 H 0.96695 * 117.00531 * 179.97438 * 15 13 11 30 30 H 1.09006 * 109.59786 * 181.03090 * 16 11 10 31 31 H 1.08993 * 109.47848 * 60.89000 * 16 11 10 32 32 H 1.08993 * 109.53784 * 297.63775 * 17 16 11 33 33 H 1.09004 * 109.53234 * 177.48023 * 17 16 11 34 34 H 1.09005 * 109.48421 * 299.93076 * 20 18 17 35 35 H 1.09003 * 109.48531 * 59.97849 * 20 18 17 36 36 H 1.09007 * 109.46379 * 180.13419 * 21 20 18 37 37 H 1.09004 * 109.37772 * 60.20792 * 21 20 18 38 38 H 1.08997 * 109.45834 * 299.78226 * 22 21 20 39 39 H 1.09001 * 109.46059 * 179.82297 * 22 21 20 40 40 H 1.08998 * 109.47660 * 180.09226 * 23 22 21 41 41 H 1.08995 * 109.48043 * 60.05071 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2045 -3.6149 -0.0645 11 6 3.0209 -3.5393 -1.2831 12 1 3.6531 -2.6523 -1.2421 13 6 2.1185 -3.4565 -2.4873 14 8 1.0226 -3.9642 -2.4570 15 8 2.5324 -2.8187 -3.5935 16 6 3.9014 -4.7881 -1.3910 17 6 4.7996 -4.8807 -0.1541 18 6 3.9241 -4.9111 1.1012 19 1 3.2897 -5.7972 1.0809 20 6 4.8127 -4.9479 2.3458 21 6 3.9330 -4.9748 3.5976 22 6 3.0520 -3.7246 3.6327 23 6 2.1660 -3.6876 2.3854 24 6 3.0483 -3.6566 1.1361 25 1 3.6835 -2.7713 1.1642 26 1 -0.4850 0.8400 -0.0004 27 1 0.5888 -2.5363 -0.8644 28 1 0.6612 -2.5780 0.9136 29 1 1.9189 -2.7921 -4.3405 30 1 4.5203 -4.7229 -2.2860 31 1 3.2696 -5.6744 -1.4490 32 1 5.4596 -4.0141 -0.1172 33 1 5.3964 -5.7914 -0.2044 34 1 5.4379 -5.8405 2.3199 35 1 5.4458 -4.0608 2.3669 36 1 4.5651 -4.9986 4.4853 37 1 3.3019 -5.8633 3.5771 38 1 3.6831 -2.8362 3.6563 39 1 2.4242 -3.7476 4.5234 40 1 1.5400 -2.7957 2.4106 41 1 1.5339 -4.5752 2.3621 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227224725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:47 Heat of formation + Delta-G solvation = -109.479112 kcal Electronic energy + Delta-G solvation = -22299.604835 eV Core-core repulsion = 19178.153785 eV Total energy + Delta-G solvation = -3121.451050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19573 -38.85096 -35.84973 -35.11549 -33.96373 -32.15814 -30.08912 -29.25172 -26.84133 -24.92011 -23.15268 -22.72917 -21.15296 -20.31377 -19.40397 -19.08559 -17.42536 -16.48815 -15.70804 -15.40432 -14.91541 -14.70730 -14.37482 -14.03787 -13.90627 -13.35159 -13.02544 -12.74758 -12.63576 -12.38342 -11.94476 -11.85760 -11.29664 -11.14245 -11.08373 -10.95329 -10.87450 -10.76320 -10.64951 -10.39863 -10.26384 -10.16803 -10.01146 -9.80752 -9.76387 -9.37509 -9.10142 -8.41906 -7.23699 -6.04261 -4.14544 2.95917 3.24412 3.32816 3.35530 3.62004 4.38118 4.76040 4.96592 5.08205 5.13067 5.26230 5.31723 5.48065 5.55932 5.62369 5.72804 5.86819 5.91017 5.97791 5.98249 6.04930 6.11853 6.14059 6.17450 6.27948 6.35304 6.45077 6.47290 6.53271 6.66037 6.69723 6.96233 6.99306 7.12590 7.25536 7.56383 7.91313 7.94126 8.20458 8.25352 8.65757 8.95903 9.52532 11.00347 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.009335 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.247122 B = 2998.779330 C = 4151.338194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.553 4.553 8 H 0.056 0.944 9 C 0.173 3.827 10 N -0.519 5.519 11 C 0.107 3.893 12 H 0.076 0.924 13 C 0.495 3.505 14 O -0.501 6.501 15 O -0.522 6.522 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.085 4.085 19 H 0.074 0.926 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.111 4.111 24 C 0.106 3.894 25 H 0.046 0.954 26 H 0.262 0.738 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.400 0.600 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -8.909 1.266 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.592 4.592 8 H 0.074 0.926 9 C 0.048 3.952 10 N -0.245 5.245 11 C -0.003 4.003 12 H 0.093 0.907 13 C 0.336 3.664 14 O -0.387 6.387 15 O -0.333 6.333 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.104 4.104 19 H 0.093 0.907 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.002 4.002 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.258 0.742 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.881 -9.385 1.581 13.018 hybrid contribution 0.362 1.983 -0.531 2.085 sum 9.243 -7.402 1.050 11.888 Atomic orbital electron populations 1.69962 1.05982 1.26705 1.49755 1.24939 0.94710 0.99054 0.94834 0.86636 0.80205 0.84112 0.77679 1.19773 1.20965 1.20924 1.21756 0.93189 0.92109 1.52170 0.92572 1.20042 0.91064 0.84772 0.99297 1.62326 1.16294 1.47312 0.98549 1.20943 0.92742 0.98997 0.87631 0.90665 1.23276 0.86485 0.73411 0.83225 1.90651 1.21938 1.44101 1.82026 1.84539 1.51289 1.72096 1.25422 1.21605 0.97352 0.97333 0.98308 1.21573 0.97408 1.01510 0.94239 1.21292 0.96226 0.99550 0.93335 0.90716 1.21545 0.97614 1.01248 0.94444 1.21528 0.98126 0.98632 0.97173 1.21519 0.98178 0.97638 0.98097 1.21586 0.97785 1.03042 0.92412 1.21327 0.93422 0.95503 0.89993 0.93560 0.92843 0.93876 0.94114 0.74236 0.91494 0.90934 0.92057 0.91937 0.92447 0.92225 0.92753 0.92232 0.92209 0.92437 0.90113 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.55 -14.90 7.72 -34.44 -0.27 -15.17 16 8 H 0.06 1.50 5.84 -52.49 -0.31 1.19 16 9 C 0.17 4.48 4.25 -4.97 -0.02 4.46 16 10 N -0.52 -11.12 4.30 -221.50 -0.95 -12.08 16 11 C 0.11 2.11 1.92 -68.78 -0.13 1.97 16 12 H 0.08 1.58 6.71 -51.93 -0.35 1.23 16 13 C 0.49 10.24 6.44 36.01 0.23 10.47 16 14 O -0.50 -11.79 15.95 -18.75 -0.30 -12.08 16 15 O -0.52 -9.10 13.42 -39.25 -0.53 -9.63 16 16 C -0.11 -1.66 5.37 -26.56 -0.14 -1.80 16 17 C -0.11 -1.50 5.29 -26.61 -0.14 -1.64 16 18 C -0.09 -1.26 2.14 -90.58 -0.19 -1.46 16 19 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.11 -1.39 5.22 -26.73 -0.14 -1.53 16 21 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 22 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 23 C -0.11 -1.98 4.80 -26.73 -0.13 -2.11 16 24 C 0.11 1.96 1.33 -67.76 -0.09 1.87 16 25 H 0.05 0.95 6.87 -51.93 -0.36 0.59 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.04 1.26 6.00 -51.93 -0.31 0.95 16 28 H 0.04 1.12 5.97 -51.93 -0.31 0.81 16 29 H 0.40 5.13 9.10 45.56 0.41 5.55 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.70 6.24 -51.93 -0.32 1.38 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -31.24 312.34 -8.54 -39.78 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.75 Total: 4.93 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.44 Total: -6.59 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.22 Total: -37.41 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.83 Total: -21.71 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.24 -8.54 -39.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227224725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.698 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds