Wall clock time and date at job start Mon Mar 30 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99814 * 2 1 4 4 H 1.48501 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47085 * 299.99613 * 3 2 1 6 6 H 1.48501 * 109.46985 * 59.99531 * 3 2 1 7 7 C 1.37877 * 120.00532 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00204 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99606 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46736 * 177.28263 * 9 7 2 11 11 C 1.46870 * 111.00191 * 300.13735 * 10 9 7 12 12 H 1.08999 * 109.45258 * 65.66911 * 11 10 9 13 13 C 1.50710 * 109.44891 * 305.74745 * 11 10 9 14 14 O 1.20824 * 119.99976 * 330.83552 * 13 11 10 15 15 O 1.34228 * 120.00076 * 150.84175 * 13 11 10 16 16 C 1.53186 * 109.63414 * 185.71257 * 11 10 9 17 17 C 1.53145 * 109.23649 * 300.99251 * 16 11 10 18 18 C 1.53080 * 109.15055 * 57.56054 * 17 16 11 19 19 H 1.09001 * 109.49617 * 62.09178 * 18 17 16 20 20 C 1.52969 * 109.59797 * 182.21331 * 18 17 16 21 21 C 1.53025 * 109.39285 * 179.86377 * 20 18 17 22 22 C 1.52980 * 109.60089 * 300.19630 * 21 20 18 23 23 C 1.53032 * 109.53966 * 59.80378 * 22 21 20 24 24 C 1.46803 * 111.00157 * 64.26703 * 10 9 7 25 25 H 1.08998 * 109.44693 * 294.07269 * 24 10 9 26 26 H 0.96993 * 120.00262 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47165 * 57.28706 * 9 7 2 28 28 H 1.08991 * 109.46797 * 297.28196 * 9 7 2 29 29 H 0.96695 * 117.00531 * 179.97438 * 15 13 11 30 30 H 1.09006 * 109.59786 * 181.03090 * 16 11 10 31 31 H 1.08993 * 109.47848 * 60.89000 * 16 11 10 32 32 H 1.08993 * 109.53784 * 297.63775 * 17 16 11 33 33 H 1.09004 * 109.53234 * 177.48023 * 17 16 11 34 34 H 1.09005 * 109.48421 * 299.93076 * 20 18 17 35 35 H 1.09003 * 109.48531 * 59.97849 * 20 18 17 36 36 H 1.09007 * 109.46379 * 180.13419 * 21 20 18 37 37 H 1.09004 * 109.37772 * 60.20792 * 21 20 18 38 38 H 1.08997 * 109.45834 * 299.78226 * 22 21 20 39 39 H 1.09001 * 109.46059 * 179.82297 * 22 21 20 40 40 H 1.08998 * 109.47660 * 180.09226 * 23 22 21 41 41 H 1.08995 * 109.48043 * 60.05071 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2045 -3.6149 -0.0645 11 6 3.0209 -3.5393 -1.2831 12 1 3.6531 -2.6523 -1.2421 13 6 2.1185 -3.4565 -2.4873 14 8 1.0226 -3.9642 -2.4570 15 8 2.5324 -2.8187 -3.5935 16 6 3.9014 -4.7881 -1.3910 17 6 4.7996 -4.8807 -0.1541 18 6 3.9241 -4.9111 1.1012 19 1 3.2897 -5.7972 1.0809 20 6 4.8127 -4.9479 2.3458 21 6 3.9330 -4.9748 3.5976 22 6 3.0520 -3.7246 3.6327 23 6 2.1660 -3.6876 2.3854 24 6 3.0483 -3.6566 1.1361 25 1 3.6835 -2.7713 1.1642 26 1 -0.4850 0.8400 -0.0004 27 1 0.5888 -2.5363 -0.8644 28 1 0.6612 -2.5780 0.9136 29 1 1.9189 -2.7921 -4.3405 30 1 4.5203 -4.7229 -2.2860 31 1 3.2696 -5.6744 -1.4490 32 1 5.4596 -4.0141 -0.1172 33 1 5.3964 -5.7914 -0.2044 34 1 5.4379 -5.8405 2.3199 35 1 5.4458 -4.0608 2.3669 36 1 4.5651 -4.9986 4.4853 37 1 3.3019 -5.8633 3.5771 38 1 3.6831 -2.8362 3.6563 39 1 2.4242 -3.7476 4.5234 40 1 1.5400 -2.7957 2.4106 41 1 1.5339 -4.5752 2.3621 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227224725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:46 Heat of formation + Delta-G solvation = -130.700236 kcal Electronic energy + Delta-G solvation = -22300.525052 eV Core-core repulsion = 19178.153785 eV Total energy + Delta-G solvation = -3122.371267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.74740 -40.31116 -37.31057 -36.67762 -35.56343 -34.05963 -31.41788 -30.60537 -28.70504 -26.52870 -24.92078 -24.02605 -22.53855 -21.73902 -20.74957 -20.55734 -19.02357 -18.46950 -17.38476 -16.98526 -16.69539 -16.10653 -15.96193 -15.51853 -15.13198 -14.79880 -14.41953 -14.36270 -14.08345 -13.85452 -13.42463 -13.29649 -13.00284 -12.89590 -12.63904 -12.45903 -12.32430 -12.20365 -12.05869 -11.99001 -11.87774 -11.77274 -11.52487 -11.37567 -11.24776 -10.75146 -10.62083 -10.49619 -9.05572 -8.17005 -6.37851 1.30835 1.33487 1.33779 1.45359 2.15291 2.33834 3.07654 3.21960 3.75557 3.90123 3.94990 4.07727 4.23975 4.36379 4.38706 4.43700 4.55105 4.56486 4.68439 4.72032 4.81645 4.90281 4.97911 5.08153 5.12144 5.15161 5.20298 5.24991 5.33501 5.33943 5.41741 5.43974 5.47611 5.52389 5.65572 5.70649 5.78341 5.99817 6.20012 6.49061 6.82740 7.12406 7.33876 8.85292 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.009335 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.247122 B = 2998.779330 C = 4151.338194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.193 3.807 10 N -0.525 5.525 11 C 0.102 3.898 12 H 0.061 0.939 13 C 0.492 3.508 14 O -0.539 6.539 15 O -0.514 6.514 16 C -0.101 4.101 17 C -0.105 4.105 18 C -0.080 4.080 19 H 0.072 0.928 20 C -0.106 4.106 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.108 4.108 24 C 0.105 3.895 25 H 0.024 0.976 26 H 0.264 0.736 27 H 0.003 0.997 28 H 0.013 0.987 29 H 0.420 0.580 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.517 -9.896 1.662 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.590 4.590 8 H 0.076 0.924 9 C 0.066 3.934 10 N -0.250 5.250 11 C -0.009 4.009 12 H 0.079 0.921 13 C 0.335 3.665 14 O -0.428 6.428 15 O -0.327 6.327 16 C -0.139 4.139 17 C -0.143 4.143 18 C -0.099 4.099 19 H 0.091 0.909 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.146 4.146 24 C -0.003 4.003 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.021 0.979 28 H 0.031 0.969 29 H 0.281 0.719 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.066 -10.378 1.962 16.035 hybrid contribution -0.677 2.287 -0.706 2.488 sum 11.388 -8.090 1.256 14.026 Atomic orbital electron populations 1.70102 1.07709 1.27677 1.51051 1.25819 0.95515 1.02858 0.94544 0.85562 0.79264 0.79501 0.77760 1.18602 1.20581 1.20370 1.21937 0.93207 0.92667 1.51209 0.92384 1.19563 0.91454 0.86411 0.95957 1.62258 1.17176 1.44914 1.00684 1.21166 0.92433 1.00879 0.86376 0.92091 1.23612 0.86042 0.72790 0.84096 1.90633 1.23381 1.45915 1.82832 1.84485 1.51690 1.71011 1.25497 1.21649 0.97039 0.94513 1.00660 1.21609 0.96950 1.03503 0.92216 1.21277 0.96149 0.96712 0.95745 0.90948 1.21544 0.97264 1.02740 0.92783 1.21518 0.98034 0.97066 0.98373 1.21490 0.98053 0.99077 0.96345 1.21525 0.97982 1.00601 0.94500 1.21464 0.93156 0.96969 0.88676 0.95818 0.92741 0.97899 0.96895 0.71931 0.88919 0.91175 0.91785 0.88178 0.89318 0.92255 0.90204 0.91683 0.92816 0.91483 0.94606 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 2 C 0.01 0.69 5.46 84.65 0.46 1.15 16 3 Si 0.95 44.34 29.54 68.60 2.03 46.36 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.55 -30.76 7.72 25.60 0.20 -30.56 16 8 H 0.06 3.16 5.84 -2.91 -0.02 3.14 16 9 C 0.19 10.56 4.25 85.56 0.36 10.93 16 10 N -0.53 -23.24 4.30 -854.70 -3.68 -26.92 16 11 C 0.10 4.00 1.92 44.24 0.08 4.09 16 12 H 0.06 2.57 6.71 -2.39 -0.02 2.56 16 13 C 0.49 20.66 6.44 71.24 0.46 21.12 16 14 O -0.54 -26.24 15.95 21.97 0.35 -25.89 16 15 O -0.51 -17.67 13.42 -51.40 -0.69 -18.36 16 16 C -0.10 -2.88 5.37 30.71 0.16 -2.71 16 17 C -0.11 -2.51 5.29 30.67 0.16 -2.35 16 18 C -0.08 -2.19 2.14 -10.77 -0.02 -2.21 16 19 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 20 C -0.11 -2.24 5.22 30.59 0.16 -2.08 16 21 C -0.11 -2.43 5.92 30.60 0.18 -2.24 16 22 C -0.11 -3.15 5.92 30.60 0.18 -2.97 16 23 C -0.11 -4.02 4.80 30.60 0.15 -3.88 16 24 C 0.11 3.94 1.33 44.94 0.06 4.00 16 25 H 0.02 0.99 6.87 -2.39 -0.02 0.98 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.00 0.18 6.00 -2.39 -0.01 0.17 16 28 H 0.01 0.77 5.97 -2.39 -0.01 0.76 16 29 H 0.42 10.53 9.10 -74.06 -0.67 9.86 16 30 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.62 6.24 -2.39 -0.01 1.60 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -71.34 312.34 1.25 -70.10 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.35 Total: 18.76 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 2.60 Total: -7.73 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -3.39 Total: -83.25 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.34 Total: -44.25 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -71.34 1.25 -70.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227224725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.604 kcal (2) G-P(sol) polarization free energy of solvation -71.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds