Wall clock time and date at job start Mon Mar 30 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.45556 * 2 1 4 4 O 1.20818 * 119.99659 * 251.43827 * 3 2 1 5 5 O 1.34227 * 120.00059 * 71.44053 * 3 2 1 6 6 C 1.53035 * 109.46376 * 240.02461 * 2 1 3 7 7 C 1.53123 * 109.30932 * 299.18420 * 6 2 1 8 8 C 1.53121 * 109.15994 * 302.32732 * 7 6 2 9 9 C 1.53033 * 109.28119 * 57.65561 * 8 7 6 10 10 N 1.46851 * 109.52333 * 300.81949 * 9 8 7 11 11 C 1.46901 * 111.00128 * 185.83932 * 10 9 8 12 12 C 1.53001 * 109.47067 * 52.41662 * 11 10 9 13 13 C 1.50698 * 115.54878 * 39.97158 * 12 11 10 14 14 H 1.07998 * 120.00306 * 1.77385 * 13 12 11 15 15 C 1.37878 * 119.99730 * 181.77691 * 13 12 11 16 16 N 1.31517 * 120.00147 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47417 * 59.99393 * 17 15 13 19 19 H 1.48500 * 109.47213 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46822 * 299.99440 * 17 15 13 21 21 C 1.53002 * 117.49637 * 254.26245 * 12 11 10 22 22 C 1.52992 * 117.49635 * 185.64110 * 12 11 10 23 23 H 1.08989 * 109.47521 * 184.55961 * 1 2 3 24 24 H 1.09003 * 109.46941 * 304.56863 * 1 2 3 25 25 H 1.09005 * 109.46530 * 64.55882 * 1 2 3 26 26 H 0.96698 * 117.00327 * 180.02562 * 5 3 2 27 27 H 1.08999 * 109.49884 * 179.22787 * 6 2 1 28 28 H 1.08994 * 109.50707 * 59.14722 * 6 2 1 29 29 H 1.09000 * 109.51911 * 62.23405 * 7 6 2 30 30 H 1.08993 * 109.52049 * 182.42384 * 7 6 2 31 31 H 1.09002 * 109.50004 * 177.59799 * 8 7 6 32 32 H 1.08996 * 109.50385 * 297.71216 * 8 7 6 33 33 H 1.09000 * 109.46451 * 60.83422 * 9 8 7 34 34 H 1.08999 * 109.46451 * 180.80325 * 9 8 7 35 35 H 1.08993 * 109.47019 * 172.41945 * 11 10 9 36 36 H 1.08996 * 109.46776 * 292.41462 * 11 10 9 37 37 H 0.97002 * 120.00064 * 180.02562 * 16 15 13 38 38 H 1.09001 * 117.50191 * 0.02562 * 21 12 11 39 39 H 1.08996 * 117.49666 * 145.02102 * 21 12 11 40 40 H 1.08999 * 117.50168 * 214.97796 * 22 12 11 41 41 H 1.09003 * 117.49990 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4210 0.0000 4 8 2.5472 1.8796 -0.9919 5 8 1.9066 2.1771 1.1020 6 6 2.0399 -0.7209 -1.2499 7 6 1.5442 -2.1696 -1.2365 8 6 2.0268 -2.8540 0.0454 9 6 1.5173 -2.0722 1.2583 10 7 2.0192 -0.6934 1.1995 11 6 1.6650 0.0482 2.4172 12 6 2.1162 -0.7438 3.6460 13 6 3.4561 -1.4230 3.5255 14 1 4.0409 -1.3078 2.6250 15 6 3.9353 -2.1916 4.5651 16 7 3.2233 -2.3316 5.6620 17 14 5.5964 -3.0329 4.4161 18 1 6.6527 -2.0099 4.2097 19 1 5.8794 -3.7936 5.6597 20 1 5.5773 -3.9649 3.2601 21 6 1.0358 -1.4520 4.4658 22 6 1.7203 -0.2012 5.0206 23 1 -0.3634 -1.0243 0.0817 24 1 -0.3633 0.5831 0.8463 25 1 -0.3632 0.4415 -0.9281 26 1 2.2431 3.0823 1.0539 27 1 3.1298 -0.7093 -1.2574 28 1 1.6644 -0.2161 -2.1399 29 1 0.4548 -2.1821 -1.2682 30 1 1.9409 -2.6983 -2.1031 31 1 1.6413 -3.8730 0.0812 32 1 3.1165 -2.8760 0.0582 33 1 0.4273 -2.0624 1.2524 34 1 1.8711 -2.5488 2.1725 35 1 2.1606 1.0189 2.4084 36 1 0.5852 0.1919 2.4538 37 1 3.5606 -2.8721 6.3935 38 1 0.0036 -1.3541 4.1295 39 1 1.2939 -2.4095 4.9181 40 1 2.4287 -0.3358 5.8380 41 1 1.1380 0.7198 5.0495 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228006244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:31 Heat of formation + Delta-G solvation = -46.499804 kcal Electronic energy + Delta-G solvation = -22482.255903 eV Core-core repulsion = 19363.535840 eV Total energy + Delta-G solvation = -3118.720063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76812 -38.53958 -36.55110 -35.84805 -32.87863 -31.76467 -31.21553 -27.57474 -26.01664 -25.24249 -24.27638 -22.49907 -21.08191 -20.48843 -18.88914 -18.31334 -17.76781 -16.74086 -15.88790 -15.48531 -14.99938 -14.70261 -14.49098 -14.01184 -13.47642 -13.31797 -13.05968 -12.76101 -12.36276 -12.29832 -12.14547 -11.96523 -11.56664 -11.21612 -10.97603 -10.90996 -10.79173 -10.65213 -10.38277 -10.22388 -10.09998 -10.01845 -9.95303 -9.80361 -9.28656 -8.66475 -8.28127 -7.95159 -7.55390 -5.88031 -3.90602 2.40161 3.26772 3.34844 3.39657 3.43523 4.43118 4.47753 4.79390 5.00258 5.14941 5.28366 5.29296 5.43977 5.54237 5.65571 5.75569 5.88414 5.91775 5.99496 6.11138 6.16263 6.21155 6.26290 6.39379 6.45001 6.48769 6.69332 6.73927 6.80224 6.84674 6.92033 7.16308 7.26750 7.40633 7.68141 7.76572 7.89171 8.13020 8.14474 8.27380 8.63450 9.09591 9.63507 11.07835 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.007678 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.286892 B = 3646.058574 C = 4010.905886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.117 3.883 3 C 0.500 3.500 4 O -0.523 6.523 5 O -0.495 6.495 6 C -0.092 4.092 7 C -0.119 4.119 8 C -0.120 4.120 9 C 0.055 3.945 10 N -0.499 5.499 11 C 0.083 3.917 12 C 0.022 3.978 13 C -0.452 4.452 14 H 0.071 0.929 15 C 0.053 3.947 16 N -0.885 5.885 17 Si 0.893 3.107 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.194 4.194 22 C -0.187 4.187 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.394 0.606 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.023 0.977 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.015 0.985 37 H 0.256 0.744 38 H 0.035 0.965 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 2.805 -10.007 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.025 3.975 3 C 0.343 3.657 4 O -0.411 6.411 5 O -0.307 6.307 6 C -0.130 4.130 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.072 4.072 10 N -0.224 5.224 11 C -0.043 4.043 12 C 0.022 3.978 13 C -0.490 4.490 14 H 0.089 0.911 15 C -0.147 4.147 16 N -0.524 5.524 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.232 4.232 22 C -0.226 4.226 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.253 0.747 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.918 2.413 -10.112 11.501 hybrid contribution 0.114 0.251 0.167 0.323 sum -4.804 2.664 -9.945 11.361 Atomic orbital electron populations 1.22504 0.95023 1.04015 1.02575 1.20978 0.93835 0.86999 0.95691 1.23432 0.74174 0.88463 0.79662 1.90652 1.41245 1.74167 1.35001 1.84958 1.77085 1.29028 1.39605 1.21452 1.02151 0.95076 0.94334 1.21640 1.00371 0.95070 0.98588 1.21646 1.02164 0.98107 0.93828 1.22288 0.96047 0.88110 1.00724 1.62202 1.58079 1.02213 0.99939 1.22217 0.96313 0.97646 0.88128 1.19006 0.94554 0.97700 0.86588 1.20601 1.00701 1.26675 1.01003 0.91093 1.25042 0.97259 0.96940 0.95488 1.70015 1.36898 1.39983 1.05484 0.86644 0.84605 0.79575 0.77055 1.20466 1.21693 1.20315 1.22961 0.92924 0.99347 1.07985 1.22740 1.03923 0.93829 1.02070 0.90075 0.91368 0.92150 0.74702 0.90501 0.91351 0.92255 0.91895 0.91966 0.90916 0.95846 0.86374 0.88521 0.96719 0.93322 0.94652 0.86945 0.87653 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 7.34 37.16 0.27 -2.22 16 2 C 0.12 1.84 0.66 -132.71 -0.09 1.75 16 3 C 0.50 8.16 7.09 36.01 0.26 8.41 16 4 O -0.52 -9.35 16.75 -18.74 -0.31 -9.67 16 5 O -0.50 -7.16 9.58 -39.25 -0.38 -7.53 16 6 C -0.09 -1.33 4.24 -26.65 -0.11 -1.45 16 7 C -0.12 -1.53 5.70 -26.61 -0.15 -1.68 16 8 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 9 C 0.06 0.98 4.60 -3.83 -0.02 0.97 16 10 N -0.50 -9.22 3.79 -220.29 -0.83 -10.05 16 11 C 0.08 1.67 4.11 -3.82 -0.02 1.65 16 12 C 0.02 0.52 1.36 -155.66 -0.21 0.31 16 13 C -0.45 -11.70 7.22 -34.44 -0.25 -11.95 16 14 H 0.07 1.88 7.44 -52.49 -0.39 1.49 16 15 C 0.05 1.40 5.28 -17.82 -0.09 1.30 16 16 N -0.88 -24.01 8.59 55.43 0.48 -23.53 16 17 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.19 -4.65 8.81 -26.73 -0.24 -4.89 16 22 C -0.19 -4.55 9.39 -26.74 -0.25 -4.80 16 23 H 0.08 1.08 4.80 -51.94 -0.25 0.83 16 24 H 0.07 0.97 6.70 -51.93 -0.35 0.62 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.39 3.86 9.10 52.55 0.48 4.34 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 29 H 0.06 0.70 6.66 -51.93 -0.35 0.36 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.40 6.10 -51.93 -0.32 0.08 16 34 H 0.12 2.54 5.29 -51.93 -0.27 2.26 16 35 H 0.10 1.96 4.95 -45.41 -0.22 1.74 16 36 H 0.01 0.29 6.22 -51.93 -0.32 -0.03 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.11 2.98 6.13 -51.93 -0.32 2.66 16 40 H 0.11 2.84 6.44 -51.93 -0.33 2.51 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -28.64 304.53 -7.69 -36.33 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.15 Total: 8.51 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.06 Total: -14.57 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: -0.36 Total: -33.58 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.69 Total: -17.20 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.64 -7.69 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228006244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.169 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds