Wall clock time and date at job start Mon Mar 30 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.46201 * 2 1 4 4 O 1.20828 * 120.00360 * 25.02013 * 3 2 1 5 5 O 1.34233 * 120.00064 * 205.02198 * 3 2 1 6 6 C 1.53041 * 109.46055 * 119.96558 * 2 1 3 7 7 C 1.53119 * 109.27687 * 60.83830 * 6 2 1 8 8 C 1.53116 * 109.16154 * 57.65517 * 7 6 2 9 9 C 1.53035 * 109.27642 * 302.34097 * 8 7 6 10 10 N 1.46843 * 109.52403 * 59.18553 * 9 8 7 11 11 C 1.46896 * 111.00484 * 174.15975 * 10 9 8 12 12 C 1.53004 * 109.47143 * 294.20708 * 11 10 9 13 13 C 1.50701 * 115.56042 * 325.68780 * 12 11 10 14 14 H 1.08004 * 119.99642 * 358.98907 * 13 12 11 15 15 C 1.37874 * 120.00086 * 178.98451 * 13 12 11 16 16 N 1.31514 * 119.99802 * 5.47626 * 15 13 12 17 17 Si 1.86796 * 119.99956 * 185.48420 * 15 13 12 18 18 H 1.48499 * 109.47478 * 94.98076 * 17 15 13 19 19 H 1.48508 * 109.47173 * 214.98147 * 17 15 13 20 20 H 1.48503 * 109.47329 * 334.97718 * 17 15 13 21 21 C 1.52997 * 117.49970 * 179.97438 * 12 11 10 22 22 C 1.52996 * 117.49923 * 111.37346 * 12 11 10 23 23 H 1.09000 * 109.46695 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46995 * 299.97973 * 1 2 3 25 25 H 1.08994 * 109.46790 * 59.98182 * 1 2 3 26 26 H 0.96693 * 117.00311 * 179.97438 * 5 3 2 27 27 H 1.09002 * 109.50060 * 180.77830 * 6 2 1 28 28 H 1.08999 * 109.50384 * 300.89372 * 6 2 1 29 29 H 1.09004 * 109.51854 * 177.55831 * 7 6 2 30 30 H 1.09001 * 109.52265 * 297.74570 * 7 6 2 31 31 H 1.09003 * 109.50708 * 62.28336 * 8 7 6 32 32 H 1.09002 * 109.50176 * 182.36820 * 8 7 6 33 33 H 1.08997 * 109.46811 * 299.16481 * 9 8 7 34 34 H 1.09008 * 109.46032 * 179.19680 * 9 8 7 35 35 H 1.09001 * 109.47670 * 174.20927 * 11 10 9 36 36 H 1.08996 * 109.47173 * 54.20699 * 11 10 9 37 37 H 0.97005 * 119.99747 * 179.97438 * 16 15 13 38 38 H 1.09003 * 117.49654 * 145.02264 * 21 12 11 39 39 H 1.08997 * 117.50089 * 0.02562 * 21 12 11 40 40 H 1.09001 * 117.50053 * 359.97438 * 22 12 11 41 41 H 1.08998 * 117.52136 * 214.97532 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0321 1.4209 0.0000 4 8 1.3394 2.3065 0.4425 5 8 3.2490 1.7027 -0.4917 6 6 2.0399 -0.7207 1.2501 7 6 1.5443 -2.1694 1.2359 8 6 2.0270 -2.8532 -0.0463 9 6 1.5174 -2.0707 -1.2587 10 7 2.0193 -0.6920 -1.1993 11 6 1.6652 0.0503 -2.4165 12 6 2.3962 -0.5576 -3.6153 13 6 3.7730 -1.1001 -3.3306 14 1 4.1862 -1.0289 -2.3353 15 6 4.5051 -1.6874 -4.3406 16 7 4.0489 -1.6784 -5.5741 17 14 6.1447 -2.4959 -3.9571 18 1 5.9406 -3.9508 -3.7406 19 1 7.0762 -2.2907 -5.0953 20 1 6.7210 -1.8890 -2.7303 21 6 2.1570 0.0793 -4.9857 22 6 1.5518 -1.2875 -4.6617 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5141 -0.8898 26 1 3.5273 2.6285 -0.4707 27 1 3.1298 -0.7090 1.2578 28 1 1.6638 -0.2161 2.1400 29 1 1.9409 -2.6986 2.1024 30 1 0.4548 -2.1820 1.2675 31 1 3.1167 -2.8750 -0.0591 32 1 1.6420 -3.8723 -0.0823 33 1 0.4275 -2.0609 -1.2529 34 1 1.8713 -2.5469 -2.1732 35 1 1.9579 1.0942 -2.3037 36 1 0.5890 -0.0099 -2.5785 37 1 4.5641 -2.0912 -6.2848 38 1 2.9957 0.1062 -5.6815 39 1 1.4792 0.9316 -5.0332 40 1 0.4755 -1.3351 -4.4959 41 1 1.9918 -2.1601 -5.1445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228006258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:34 Heat of formation + Delta-G solvation = -52.116529 kcal Electronic energy + Delta-G solvation = -22452.968645 eV Core-core repulsion = 19334.005023 eV Total energy + Delta-G solvation = -3118.963622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71934 -38.53921 -36.43784 -35.76537 -32.98476 -31.77713 -31.22795 -27.58466 -26.08336 -25.23111 -24.25694 -22.63542 -20.87795 -20.50356 -18.86717 -18.52277 -17.66454 -16.73547 -15.87413 -15.45268 -14.96129 -14.61769 -14.33377 -14.04718 -13.58788 -13.36461 -13.02412 -12.77271 -12.48985 -12.25839 -12.09804 -11.88092 -11.55510 -11.18907 -10.99257 -10.96652 -10.88379 -10.74854 -10.54156 -10.30513 -10.09619 -9.98569 -9.90820 -9.87926 -9.37333 -8.71865 -8.26002 -7.95255 -7.58250 -5.83641 -3.84251 2.44036 3.34053 3.35305 3.43346 3.48235 4.24277 4.50961 4.81253 4.97540 5.14809 5.18391 5.34427 5.40800 5.53583 5.64420 5.75770 5.82690 5.83079 5.93360 6.06252 6.09155 6.12229 6.17733 6.29099 6.33951 6.38631 6.54843 6.70691 6.73995 6.74951 6.79295 7.08754 7.23158 7.31699 7.63044 7.69316 7.88486 8.15844 8.26105 8.29579 8.68995 9.18465 9.69700 11.13224 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019255 B = 0.007774 C = 0.007210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.806643 B = 3601.036949 C = 3882.378985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.117 3.883 3 C 0.499 3.501 4 O -0.532 6.532 5 O -0.484 6.484 6 C -0.102 4.102 7 C -0.117 4.117 8 C -0.118 4.118 9 C 0.059 3.941 10 N -0.489 5.489 11 C 0.099 3.901 12 C 0.028 3.972 13 C -0.442 4.442 14 H 0.078 0.922 15 C 0.049 3.951 16 N -0.888 5.888 17 Si 0.892 3.108 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.273 1.273 21 C -0.190 4.190 22 C -0.194 4.194 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.399 0.601 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.014 0.986 37 H 0.254 0.746 38 H 0.116 0.884 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 0.527 11.120 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.025 3.975 3 C 0.341 3.659 4 O -0.422 6.422 5 O -0.292 6.292 6 C -0.140 4.140 7 C -0.154 4.154 8 C -0.156 4.156 9 C -0.069 4.069 10 N -0.213 5.213 11 C -0.028 4.028 12 C 0.027 3.973 13 C -0.480 4.480 14 H 0.096 0.904 15 C -0.150 4.150 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.198 1.198 21 C -0.228 4.228 22 C -0.232 4.232 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.256 0.744 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.065 0.935 38 H 0.134 0.866 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.417 0.267 11.085 11.935 hybrid contribution 0.053 0.331 -0.131 0.360 sum -4.364 0.598 10.954 11.806 Atomic orbital electron populations 1.22403 0.94604 1.03018 1.03221 1.20910 0.93392 0.87635 0.95558 1.23351 0.78814 0.91547 0.72172 1.90667 1.57738 1.48800 1.44969 1.84818 1.34137 1.35067 1.75207 1.21563 1.02283 0.95902 0.94221 1.21596 1.00488 0.94737 0.98618 1.21621 1.02402 0.97966 0.93618 1.22144 0.95981 0.88508 1.00219 1.62085 1.57953 1.01739 0.99533 1.21729 0.95102 0.96453 0.89539 1.18920 0.94942 0.98868 0.84590 1.20691 0.97384 1.33840 0.96044 0.90384 1.25058 0.97885 0.96923 0.95138 1.70033 1.38079 1.44925 0.99721 0.86563 0.83949 0.79593 0.77775 1.21117 1.21801 1.19806 1.22902 1.02678 0.92825 1.04429 1.22826 0.93669 0.98023 1.08683 0.90477 0.91362 0.92089 0.74404 0.90058 0.91632 0.91765 0.92083 0.90590 0.91895 0.95779 0.87787 0.92268 0.96797 0.93526 0.86588 0.94594 0.94452 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 6.99 37.16 0.26 -2.24 16 2 C 0.12 1.84 0.64 -132.76 -0.09 1.75 16 3 C 0.50 8.34 5.70 36.00 0.21 8.54 16 4 O -0.53 -9.62 16.85 -18.75 -0.32 -9.94 16 5 O -0.48 -7.74 12.14 -39.27 -0.48 -8.21 16 6 C -0.10 -1.37 4.87 -26.65 -0.13 -1.50 16 7 C -0.12 -1.40 5.69 -26.61 -0.15 -1.55 16 8 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 9 C 0.06 1.00 4.84 -3.84 -0.02 0.98 16 10 N -0.49 -8.90 3.16 -220.35 -0.70 -9.60 16 11 C 0.10 2.02 4.23 -3.82 -0.02 2.01 16 12 C 0.03 0.66 1.51 -155.66 -0.23 0.42 16 13 C -0.44 -11.48 7.94 -34.44 -0.27 -11.75 16 14 H 0.08 2.06 7.24 -52.48 -0.38 1.68 16 15 C 0.05 1.31 5.25 -17.82 -0.09 1.22 16 16 N -0.89 -24.37 8.62 55.43 0.48 -23.89 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.19 -4.70 9.38 -26.76 -0.25 -4.96 16 22 C -0.19 -4.70 9.10 -26.76 -0.24 -4.94 16 23 H 0.08 1.01 4.80 -51.93 -0.25 0.76 16 24 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 25 H 0.06 0.95 6.77 -51.93 -0.35 0.59 16 26 H 0.40 4.45 9.10 45.56 0.41 4.87 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.02 0.38 6.19 -51.93 -0.32 0.06 16 34 H 0.10 2.10 6.45 -51.92 -0.34 1.76 16 35 H 0.06 1.24 5.93 -51.93 -0.31 0.93 16 36 H 0.01 0.28 6.71 -51.93 -0.35 -0.07 16 37 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.12 3.18 6.16 -51.93 -0.32 2.86 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.10 2.78 6.41 -51.93 -0.33 2.45 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -29.25 309.30 -7.94 -37.19 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.37 Total: 7.65 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.20 Total: -13.83 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: -0.22 Total: -33.48 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.79 Total: -18.15 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.25 -7.94 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228006258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.930 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds