Wall clock time and date at job start Mon Mar 30 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.46201 * 2 1 4 4 O 1.20828 * 120.00360 * 25.02013 * 3 2 1 5 5 O 1.34233 * 120.00064 * 205.02198 * 3 2 1 6 6 C 1.53041 * 109.46055 * 119.96558 * 2 1 3 7 7 C 1.53119 * 109.27687 * 60.83830 * 6 2 1 8 8 C 1.53116 * 109.16154 * 57.65517 * 7 6 2 9 9 C 1.53035 * 109.27642 * 302.34097 * 8 7 6 10 10 N 1.46843 * 109.52403 * 59.18553 * 9 8 7 11 11 C 1.46896 * 111.00484 * 174.15975 * 10 9 8 12 12 C 1.53004 * 109.47143 * 294.20708 * 11 10 9 13 13 C 1.50701 * 115.56042 * 325.68780 * 12 11 10 14 14 H 1.08004 * 119.99642 * 358.98907 * 13 12 11 15 15 C 1.37874 * 120.00086 * 178.98451 * 13 12 11 16 16 N 1.31514 * 119.99802 * 5.47626 * 15 13 12 17 17 Si 1.86796 * 119.99956 * 185.48420 * 15 13 12 18 18 H 1.48499 * 109.47478 * 94.98076 * 17 15 13 19 19 H 1.48508 * 109.47173 * 214.98147 * 17 15 13 20 20 H 1.48503 * 109.47329 * 334.97718 * 17 15 13 21 21 C 1.52997 * 117.49970 * 179.97438 * 12 11 10 22 22 C 1.52996 * 117.49923 * 111.37346 * 12 11 10 23 23 H 1.09000 * 109.46695 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46995 * 299.97973 * 1 2 3 25 25 H 1.08994 * 109.46790 * 59.98182 * 1 2 3 26 26 H 0.96693 * 117.00311 * 179.97438 * 5 3 2 27 27 H 1.09002 * 109.50060 * 180.77830 * 6 2 1 28 28 H 1.08999 * 109.50384 * 300.89372 * 6 2 1 29 29 H 1.09004 * 109.51854 * 177.55831 * 7 6 2 30 30 H 1.09001 * 109.52265 * 297.74570 * 7 6 2 31 31 H 1.09003 * 109.50708 * 62.28336 * 8 7 6 32 32 H 1.09002 * 109.50176 * 182.36820 * 8 7 6 33 33 H 1.08997 * 109.46811 * 299.16481 * 9 8 7 34 34 H 1.09008 * 109.46032 * 179.19680 * 9 8 7 35 35 H 1.09001 * 109.47670 * 174.20927 * 11 10 9 36 36 H 1.08996 * 109.47173 * 54.20699 * 11 10 9 37 37 H 0.97005 * 119.99747 * 179.97438 * 16 15 13 38 38 H 1.09003 * 117.49654 * 145.02264 * 21 12 11 39 39 H 1.08997 * 117.50089 * 0.02562 * 21 12 11 40 40 H 1.09001 * 117.50053 * 359.97438 * 22 12 11 41 41 H 1.08998 * 117.52136 * 214.97532 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0321 1.4209 0.0000 4 8 1.3394 2.3065 0.4425 5 8 3.2490 1.7027 -0.4917 6 6 2.0399 -0.7207 1.2501 7 6 1.5443 -2.1694 1.2359 8 6 2.0270 -2.8532 -0.0463 9 6 1.5174 -2.0707 -1.2587 10 7 2.0193 -0.6920 -1.1993 11 6 1.6652 0.0503 -2.4165 12 6 2.3962 -0.5576 -3.6153 13 6 3.7730 -1.1001 -3.3306 14 1 4.1862 -1.0289 -2.3353 15 6 4.5051 -1.6874 -4.3406 16 7 4.0489 -1.6784 -5.5741 17 14 6.1447 -2.4959 -3.9571 18 1 5.9406 -3.9508 -3.7406 19 1 7.0762 -2.2907 -5.0953 20 1 6.7210 -1.8890 -2.7303 21 6 2.1570 0.0793 -4.9857 22 6 1.5518 -1.2875 -4.6617 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5141 -0.8898 26 1 3.5273 2.6285 -0.4707 27 1 3.1298 -0.7090 1.2578 28 1 1.6638 -0.2161 2.1400 29 1 1.9409 -2.6986 2.1024 30 1 0.4548 -2.1820 1.2675 31 1 3.1167 -2.8750 -0.0591 32 1 1.6420 -3.8723 -0.0823 33 1 0.4275 -2.0609 -1.2529 34 1 1.8713 -2.5469 -2.1732 35 1 1.9579 1.0942 -2.3037 36 1 0.5890 -0.0099 -2.5785 37 1 4.5641 -2.0912 -6.2848 38 1 2.9957 0.1062 -5.6815 39 1 1.4792 0.9316 -5.0332 40 1 0.4755 -1.3351 -4.4959 41 1 1.9918 -2.1601 -5.1445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228006258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:33 Heat of formation + Delta-G solvation = -69.469122 kcal Electronic energy + Delta-G solvation = -22453.721110 eV Core-core repulsion = 19334.005023 eV Total energy + Delta-G solvation = -3119.716087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.00240 -39.88318 -38.20147 -37.07879 -34.35794 -33.33070 -32.84976 -28.84576 -27.71906 -26.97670 -25.50641 -23.97814 -22.65932 -21.89273 -20.73623 -19.72842 -18.96888 -18.17953 -17.53853 -17.01532 -16.63385 -15.92032 -15.78210 -15.33963 -15.14277 -14.87108 -14.38090 -14.14264 -13.81939 -13.65605 -13.40278 -13.09389 -13.04536 -12.88862 -12.69363 -12.48019 -12.37720 -12.09997 -12.07678 -11.98682 -11.89053 -11.47582 -11.29700 -11.12950 -11.08749 -10.68035 -10.19405 -9.94254 -8.98463 -7.87597 -5.92973 1.15331 1.46213 1.49538 1.59305 2.17701 2.53383 2.88663 3.17733 3.69469 3.82855 3.94813 4.10552 4.20756 4.27393 4.38093 4.46531 4.50627 4.61254 4.64268 4.67668 4.76751 4.85294 4.92439 5.01711 5.04369 5.11020 5.13279 5.19390 5.28332 5.30641 5.41664 5.49333 5.57306 5.62497 5.73600 6.05803 6.22004 6.29895 6.33828 6.69583 7.07530 7.12278 7.62907 9.07297 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019255 B = 0.007774 C = 0.007210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.806643 B = 3601.036949 C = 3882.378985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 C 0.498 3.502 4 O -0.549 6.549 5 O -0.496 6.496 6 C -0.100 4.100 7 C -0.109 4.109 8 C -0.114 4.114 9 C 0.060 3.940 10 N -0.501 5.501 11 C 0.110 3.890 12 C 0.026 3.974 13 C -0.445 4.445 14 H 0.071 0.929 15 C 0.005 3.995 16 N -0.910 5.910 17 Si 0.949 3.051 18 H -0.281 1.281 19 H -0.296 1.296 20 H -0.270 1.270 21 C -0.198 4.198 22 C -0.186 4.186 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.417 0.583 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.019 0.981 37 H 0.251 0.749 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 0.045 13.282 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.021 3.979 3 C 0.341 3.659 4 O -0.440 6.440 5 O -0.307 6.307 6 C -0.138 4.138 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.067 4.067 10 N -0.226 5.226 11 C -0.017 4.017 12 C 0.025 3.975 13 C -0.483 4.483 14 H 0.089 0.911 15 C -0.193 4.193 16 N -0.550 5.550 17 Si 0.777 3.223 18 H -0.207 1.207 19 H -0.222 1.222 20 H -0.194 1.194 21 C -0.237 4.237 22 C -0.224 4.224 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.277 0.723 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.052 -0.207 13.259 14.190 hybrid contribution 0.272 0.521 -0.825 1.013 sum -4.780 0.314 12.434 13.325 Atomic orbital electron populations 1.22370 0.93324 1.03949 1.03005 1.21108 0.94389 0.87112 0.95264 1.23586 0.78705 0.91879 0.71695 1.90655 1.58133 1.49350 1.45858 1.84782 1.34010 1.36919 1.74953 1.21609 1.01712 0.96880 0.93567 1.21580 1.01466 0.93470 0.98087 1.21595 1.01293 0.98839 0.93501 1.22096 0.96704 0.87889 1.00059 1.61966 1.58887 1.02254 0.99460 1.21476 0.94768 0.95998 0.89482 1.19035 0.94600 0.98270 0.85561 1.20829 0.98346 1.33564 0.95525 0.91066 1.25688 1.00749 0.97693 0.95121 1.70186 1.39001 1.45613 1.00242 0.85675 0.80571 0.78791 0.77305 1.20739 1.22229 1.19430 1.22790 1.02368 0.93798 1.04712 1.22645 0.94573 0.96554 1.08591 0.88918 0.90293 0.93577 0.72320 0.91125 0.89693 0.89328 0.90482 0.92394 0.89983 0.94429 0.91510 0.92933 0.96271 0.93956 0.89454 0.92835 0.92449 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.38 6.99 71.98 0.50 -3.88 16 2 C 0.11 3.31 0.64 2.80 0.00 3.31 16 3 C 0.50 15.93 5.70 71.23 0.41 16.34 16 4 O -0.55 -19.00 16.85 21.96 0.37 -18.63 16 5 O -0.50 -15.39 12.14 -51.45 -0.62 -16.02 16 6 C -0.10 -2.39 4.87 30.65 0.15 -2.24 16 7 C -0.11 -2.19 5.69 30.67 0.17 -2.01 16 8 C -0.11 -2.96 6.09 30.64 0.19 -2.77 16 9 C 0.06 1.95 4.84 86.33 0.42 2.36 16 10 N -0.50 -17.67 3.16 -851.05 -2.69 -20.36 16 11 C 0.11 4.45 4.23 86.31 0.36 4.82 16 12 C 0.03 1.25 1.51 -52.93 -0.08 1.17 16 13 C -0.44 -23.31 7.94 25.60 0.20 -23.11 16 14 H 0.07 3.78 7.24 -2.91 -0.02 3.76 16 15 C 0.00 0.24 5.25 84.65 0.44 0.69 16 16 N -0.91 -51.08 8.62 21.45 0.18 -50.89 16 17 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.20 -9.92 9.38 30.58 0.29 -9.64 16 22 C -0.19 -9.05 9.10 30.58 0.28 -8.78 16 23 H 0.09 2.10 4.80 -2.39 -0.01 2.09 16 24 H 0.08 1.90 7.87 -2.39 -0.02 1.88 16 25 H 0.05 1.33 6.77 -2.39 -0.02 1.32 16 26 H 0.42 8.93 9.10 -74.06 -0.67 8.25 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.08 1.35 6.56 -2.39 -0.02 1.33 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.11 6.19 -2.39 -0.01 1.10 16 34 H 0.07 2.69 6.45 -2.38 -0.02 2.67 16 35 H 0.05 2.17 5.93 -2.39 -0.01 2.16 16 36 H 0.02 0.75 6.71 -2.39 -0.02 0.73 16 37 H 0.25 13.72 8.31 -92.70 -0.77 12.95 16 38 H 0.09 4.92 6.16 -2.39 -0.01 4.90 16 39 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.06 2.52 8.05 -2.39 -0.02 2.50 16 41 H 0.08 4.20 6.41 -2.39 -0.02 4.18 16 Total: -1.00 -62.70 309.30 2.97 -59.73 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.37 Total: 24.32 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 3.34 Total: -23.73 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -2.51 Total: -71.26 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.25 Total: -34.65 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -62.70 2.97 -59.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228006258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.740 kcal (2) G-P(sol) polarization free energy of solvation -62.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds