Wall clock time and date at job start Mon Mar 30 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99778 * 2 1 4 4 H 1.48502 * 109.46884 * 239.99709 * 3 2 1 5 5 H 1.48502 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46977 * 119.99886 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99719 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00280 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47260 * 184.65301 * 9 7 2 11 11 C 1.46900 * 110.99875 * 162.98042 * 10 9 7 12 12 C 1.53005 * 109.47065 * 190.00526 * 11 10 9 13 13 H 1.08991 * 109.47493 * 59.99912 * 12 11 10 14 14 O 1.42903 * 109.46493 * 299.99758 * 12 11 10 15 15 C 1.53000 * 109.46785 * 180.02562 * 12 11 10 16 16 C 1.53010 * 109.46722 * 184.99515 * 15 12 11 17 17 C 1.54889 * 110.75247 * 71.66993 * 16 15 12 18 18 C 1.54269 * 104.19074 * 156.25632 * 17 16 15 19 19 C 1.53870 * 106.60253 * 336.38735 * 18 17 16 20 20 C 1.54271 * 106.59606 * 0.02562 * 19 18 17 21 21 C 1.46892 * 111.00049 * 286.93392 * 10 9 7 22 22 C 1.53000 * 117.50218 * 2.99543 * 21 10 9 23 23 C 1.53002 * 117.50252 * 294.36733 * 21 10 9 24 24 H 0.97002 * 120.00156 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47330 * 64.65321 * 9 7 2 26 26 H 1.09005 * 109.46643 * 304.65724 * 9 7 2 27 27 H 1.09000 * 109.47225 * 70.00347 * 11 10 9 28 28 H 1.09005 * 109.47308 * 310.00364 * 11 10 9 29 29 H 0.96698 * 114.00113 * 299.99655 * 14 12 11 30 30 H 1.08999 * 109.47698 * 65.00039 * 15 12 11 31 31 H 1.08995 * 109.47086 * 304.99461 * 15 12 11 32 32 H 1.08992 * 110.66903 * 308.23423 * 16 15 12 33 33 H 1.09003 * 110.48773 * 37.57977 * 17 16 15 34 34 H 1.08992 * 110.49032 * 274.93336 * 17 16 15 35 35 H 1.09004 * 110.03109 * 217.10434 * 18 17 16 36 36 H 1.09000 * 110.03411 * 95.67568 * 18 17 16 37 37 H 1.09002 * 110.03362 * 119.28433 * 19 18 17 38 38 H 1.09000 * 110.03632 * 240.71801 * 19 18 17 39 39 H 1.09004 * 110.48820 * 142.28360 * 20 19 18 40 40 H 1.08999 * 110.48402 * 264.79277 * 20 19 18 41 41 H 1.09006 * 115.54603 * 148.69928 * 21 10 9 42 42 H 1.09000 * 117.49764 * 359.97438 * 22 21 10 43 43 H 1.08993 * 117.50139 * 145.02072 * 22 21 10 44 44 H 1.09000 * 117.49945 * 214.98179 * 23 21 10 45 45 H 1.08999 * 117.49562 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2017 -3.6134 0.1135 11 6 1.5185 -4.8492 0.5184 12 6 2.5584 -5.9162 0.8665 13 1 3.1830 -5.5611 1.6861 14 8 3.3752 -6.1761 -0.2769 15 6 1.8468 -7.2035 1.2876 16 6 2.8820 -8.2291 1.7544 17 6 3.4816 -7.8200 3.1226 18 6 3.9844 -9.1472 3.7273 19 6 3.1735 -10.2704 3.0578 20 6 2.2066 -9.5867 2.0691 21 6 2.9383 -3.8064 -1.1427 22 6 2.6640 -2.8215 -2.2810 23 6 2.1399 -4.2564 -2.3678 24 1 -0.4850 0.8401 -0.0004 25 1 0.6888 -2.5941 -0.9284 26 1 0.5630 -2.5214 0.8457 27 1 0.8939 -5.2043 -0.3012 28 1 0.8954 -4.6509 1.3905 29 1 2.8846 -6.4961 -1.0462 30 1 1.2929 -7.6066 0.4398 31 1 1.1566 -6.9871 2.1029 32 1 3.6658 -8.3520 1.0071 33 1 2.7146 -7.3775 3.7584 34 1 4.3104 -7.1259 2.9838 35 1 3.8147 -9.1550 4.8040 36 1 5.0459 -9.2756 3.5153 37 1 3.8413 -10.9440 2.5208 38 1 2.6102 -10.8233 3.8095 39 1 2.1047 -10.1819 1.1617 40 1 1.2328 -9.4314 2.5336 41 1 3.9552 -4.1845 -1.0380 42 1 1.9367 -2.0306 -2.0979 43 1 3.5005 -2.5514 -2.9253 44 1 2.6317 -4.9302 -3.0694 45 1 1.0681 -4.4096 -2.2416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232135522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:31 Heat of formation + Delta-G solvation = -40.693654 kcal Electronic energy + Delta-G solvation = -21257.790035 eV Core-core repulsion = 18275.154841 eV Total energy + Delta-G solvation = -2982.635194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.15758 -38.11288 -36.21070 -33.08142 -32.36493 -31.48716 -28.81038 -28.43307 -26.45723 -23.95994 -22.67503 -21.85347 -20.98354 -20.22067 -19.92365 -18.75286 -16.47345 -16.20158 -15.99735 -15.60089 -14.96668 -14.84938 -14.79203 -14.16746 -13.49588 -13.46061 -13.21625 -12.96349 -12.28384 -12.14291 -11.76414 -11.44903 -11.39810 -11.28518 -11.14051 -11.03362 -10.84711 -10.76595 -10.68814 -10.52996 -10.49138 -10.32711 -10.13737 -10.02250 -9.79587 -9.53647 -9.25915 -8.76574 -8.40577 -7.15028 -5.99624 -3.98825 3.36325 3.39941 3.43770 4.37727 4.48568 4.54240 4.60099 4.67730 4.78815 4.93636 5.23578 5.25074 5.34650 5.35865 5.42289 5.51187 5.56667 5.63353 5.66192 5.73265 5.77314 5.81981 5.85398 5.90077 5.90866 5.96622 6.05330 6.09767 6.15244 6.21927 6.25477 6.28732 6.47158 6.57685 6.72312 6.88522 7.16857 7.26344 7.45613 7.87145 7.99185 8.14324 8.28274 8.58054 9.08873 9.63444 11.10764 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029348 B = 0.003997 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.828231 B = 7003.988938 C = 7384.530755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.493 4.493 8 H 0.064 0.936 9 C 0.186 3.814 10 N -0.502 5.502 11 C 0.026 3.974 12 C 0.115 3.885 13 H 0.102 0.898 14 O -0.553 6.553 15 C -0.143 4.143 16 C -0.086 4.086 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.122 4.122 21 C 0.057 3.943 22 C -0.181 4.181 23 C -0.237 4.237 24 H 0.261 0.739 25 H -0.006 1.006 26 H 0.028 0.972 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.364 0.636 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -17.983 2.473 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.532 4.532 8 H 0.082 0.918 9 C 0.061 3.939 10 N -0.224 5.224 11 C -0.103 4.103 12 C 0.056 3.944 13 H 0.120 0.880 14 O -0.357 6.357 15 C -0.181 4.181 16 C -0.104 4.104 17 C -0.159 4.159 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.053 4.053 22 C -0.218 4.218 23 C -0.277 4.277 24 H 0.070 0.930 25 H 0.012 0.988 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.211 0.789 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.829 -17.527 3.285 18.475 hybrid contribution -0.829 0.555 -0.982 1.400 sum 4.000 -16.972 2.303 17.588 Atomic orbital electron populations 1.69948 1.06024 1.26790 1.51421 1.24975 0.94826 0.99204 0.95772 0.86584 0.79433 0.82855 0.78707 1.20249 1.21517 1.20219 1.21093 0.93611 0.89570 1.48915 0.91805 1.19864 0.90370 0.87822 0.95839 1.62140 1.28818 1.03474 1.27994 1.22768 0.95502 0.92167 0.99870 1.21952 0.92239 0.91517 0.88709 0.88038 1.86587 1.37857 1.88283 1.23013 1.22293 0.98138 0.96145 1.01518 1.22053 0.97602 0.93646 0.97119 1.22447 1.00559 0.96821 0.96064 1.22130 0.99584 0.94966 0.99605 1.22119 0.98013 0.97786 0.98288 1.22433 0.98565 0.96280 0.98681 1.22631 0.97860 1.01523 0.83245 1.23544 1.03946 0.93427 1.00877 1.23324 0.99887 0.99709 1.04754 0.92965 0.98804 0.95404 0.95671 0.90917 0.78912 0.92020 0.91161 0.89977 0.91634 0.91400 0.92195 0.92090 0.92184 0.92264 0.92072 0.91793 0.86529 0.85238 0.90370 0.90225 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.49 -13.66 6.88 -34.44 -0.24 -13.90 16 8 H 0.06 1.79 7.80 -52.48 -0.41 1.38 16 9 C 0.19 4.77 4.27 -4.98 -0.02 4.74 16 10 N -0.50 -10.71 4.67 -228.08 -1.07 -11.78 16 11 C 0.03 0.44 4.70 -3.82 -0.02 0.43 16 12 C 0.12 1.63 3.15 -26.73 -0.08 1.55 16 13 H 0.10 1.58 7.44 -51.93 -0.39 1.20 16 14 O -0.55 -7.89 9.79 -35.23 -0.34 -8.24 16 15 C -0.14 -1.62 4.39 -26.73 -0.12 -1.73 16 16 C -0.09 -0.90 2.83 -88.64 -0.25 -1.15 16 17 C -0.12 -1.27 5.66 -25.07 -0.14 -1.41 16 18 C -0.13 -1.15 6.80 -25.61 -0.17 -1.32 16 19 C -0.12 -1.07 6.80 -25.61 -0.17 -1.25 16 20 C -0.12 -1.12 6.27 -25.08 -0.16 -1.28 16 21 C 0.06 1.11 4.27 -67.72 -0.29 0.82 16 22 C -0.18 -3.68 8.87 -26.73 -0.24 -3.92 16 23 C -0.24 -4.14 8.56 -26.73 -0.23 -4.37 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H -0.01 -0.15 6.04 -51.93 -0.31 -0.47 16 26 H 0.03 0.77 7.79 -51.93 -0.40 0.37 16 27 H 0.03 0.43 6.83 -51.93 -0.35 0.08 16 28 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 29 H 0.36 4.44 8.28 45.56 0.38 4.81 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.79 7.99 -51.93 -0.41 0.37 16 32 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 33 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 34 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.58 8.05 -51.93 -0.42 0.17 16 41 H 0.12 2.24 7.06 -51.93 -0.37 1.87 16 42 H 0.13 3.14 4.92 -51.93 -0.26 2.88 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.46 7.14 -51.93 -0.37 1.09 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -28.92 341.73 -10.24 -39.16 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.47 Total: 6.22 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.23 Total: -21.40 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.33 Total: -37.61 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.34 Total: -8.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.92 -10.24 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232135522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.532 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds