Wall clock time and date at job start Mon Mar 30 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99778 * 2 1 4 4 H 1.48502 * 109.46884 * 239.99709 * 3 2 1 5 5 H 1.48502 * 109.46923 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46977 * 119.99886 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99719 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00280 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47260 * 184.65301 * 9 7 2 11 11 C 1.46900 * 110.99875 * 162.98042 * 10 9 7 12 12 C 1.53005 * 109.47065 * 190.00526 * 11 10 9 13 13 H 1.08991 * 109.47493 * 59.99912 * 12 11 10 14 14 O 1.42903 * 109.46493 * 299.99758 * 12 11 10 15 15 C 1.53000 * 109.46785 * 180.02562 * 12 11 10 16 16 C 1.53010 * 109.46722 * 184.99515 * 15 12 11 17 17 C 1.54889 * 110.75247 * 71.66993 * 16 15 12 18 18 C 1.54269 * 104.19074 * 156.25632 * 17 16 15 19 19 C 1.53870 * 106.60253 * 336.38735 * 18 17 16 20 20 C 1.54271 * 106.59606 * 0.02562 * 19 18 17 21 21 C 1.46892 * 111.00049 * 286.93392 * 10 9 7 22 22 C 1.53000 * 117.50218 * 2.99543 * 21 10 9 23 23 C 1.53002 * 117.50252 * 294.36733 * 21 10 9 24 24 H 0.97002 * 120.00156 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47330 * 64.65321 * 9 7 2 26 26 H 1.09005 * 109.46643 * 304.65724 * 9 7 2 27 27 H 1.09000 * 109.47225 * 70.00347 * 11 10 9 28 28 H 1.09005 * 109.47308 * 310.00364 * 11 10 9 29 29 H 0.96698 * 114.00113 * 299.99655 * 14 12 11 30 30 H 1.08999 * 109.47698 * 65.00039 * 15 12 11 31 31 H 1.08995 * 109.47086 * 304.99461 * 15 12 11 32 32 H 1.08992 * 110.66903 * 308.23423 * 16 15 12 33 33 H 1.09003 * 110.48773 * 37.57977 * 17 16 15 34 34 H 1.08992 * 110.49032 * 274.93336 * 17 16 15 35 35 H 1.09004 * 110.03109 * 217.10434 * 18 17 16 36 36 H 1.09000 * 110.03411 * 95.67568 * 18 17 16 37 37 H 1.09002 * 110.03362 * 119.28433 * 19 18 17 38 38 H 1.09000 * 110.03632 * 240.71801 * 19 18 17 39 39 H 1.09004 * 110.48820 * 142.28360 * 20 19 18 40 40 H 1.08999 * 110.48402 * 264.79277 * 20 19 18 41 41 H 1.09006 * 115.54603 * 148.69928 * 21 10 9 42 42 H 1.09000 * 117.49764 * 359.97438 * 22 21 10 43 43 H 1.08993 * 117.50139 * 145.02072 * 22 21 10 44 44 H 1.09000 * 117.49945 * 214.98179 * 23 21 10 45 45 H 1.08999 * 117.49562 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2017 -3.6134 0.1135 11 6 1.5185 -4.8492 0.5184 12 6 2.5584 -5.9162 0.8665 13 1 3.1830 -5.5611 1.6861 14 8 3.3752 -6.1761 -0.2769 15 6 1.8468 -7.2035 1.2876 16 6 2.8820 -8.2291 1.7544 17 6 3.4816 -7.8200 3.1226 18 6 3.9844 -9.1472 3.7273 19 6 3.1735 -10.2704 3.0578 20 6 2.2066 -9.5867 2.0691 21 6 2.9383 -3.8064 -1.1427 22 6 2.6640 -2.8215 -2.2810 23 6 2.1399 -4.2564 -2.3678 24 1 -0.4850 0.8401 -0.0004 25 1 0.6888 -2.5941 -0.9284 26 1 0.5630 -2.5214 0.8457 27 1 0.8939 -5.2043 -0.3012 28 1 0.8954 -4.6509 1.3905 29 1 2.8846 -6.4961 -1.0462 30 1 1.2929 -7.6066 0.4398 31 1 1.1566 -6.9871 2.1029 32 1 3.6658 -8.3520 1.0071 33 1 2.7146 -7.3775 3.7584 34 1 4.3104 -7.1259 2.9838 35 1 3.8147 -9.1550 4.8040 36 1 5.0459 -9.2756 3.5153 37 1 3.8413 -10.9440 2.5208 38 1 2.6102 -10.8233 3.8095 39 1 2.1047 -10.1819 1.1617 40 1 1.2328 -9.4314 2.5336 41 1 3.9552 -4.1845 -1.0380 42 1 1.9367 -2.0306 -2.0979 43 1 3.5005 -2.5514 -2.9253 44 1 2.6317 -4.9302 -3.0694 45 1 1.0681 -4.4096 -2.2416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232135522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:31 Heat of formation + Delta-G solvation = -58.424509 kcal Electronic energy + Delta-G solvation = -21258.558903 eV Core-core repulsion = 18275.154841 eV Total energy + Delta-G solvation = -2983.404062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45615 -39.23263 -37.39342 -35.00900 -34.02680 -32.59297 -30.08876 -29.49719 -27.99695 -25.25672 -24.56009 -23.24889 -22.32743 -21.03488 -20.81878 -20.30977 -18.39902 -17.77053 -17.13224 -16.74561 -16.61254 -16.13097 -15.79414 -15.66111 -15.01028 -14.53907 -14.31631 -14.21776 -13.95287 -13.47205 -13.28726 -12.92422 -12.79145 -12.69852 -12.60752 -12.10785 -12.08322 -11.94719 -11.93171 -11.84020 -11.77115 -11.48837 -11.32653 -11.28790 -11.21198 -11.17533 -11.00009 -10.58357 -10.19200 -8.87308 -8.16310 -6.23069 1.41087 1.43591 1.51357 2.41890 3.07137 3.16779 3.27363 3.60831 3.71587 3.81058 3.91911 4.12525 4.20912 4.28088 4.30526 4.32245 4.41307 4.48288 4.64389 4.69093 4.76482 4.80087 4.82554 4.84406 4.91945 4.94607 5.07493 5.09347 5.14897 5.16029 5.18576 5.23264 5.30762 5.34321 5.39815 5.45432 5.57639 5.64531 5.66122 5.71148 6.11507 6.46679 6.68671 6.90475 6.97090 7.43688 8.93648 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029348 B = 0.003997 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.828231 B = 7003.988938 C = 7384.530755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.500 4.500 8 H 0.057 0.943 9 C 0.205 3.795 10 N -0.515 5.515 11 C 0.026 3.974 12 C 0.130 3.870 13 H 0.086 0.914 14 O -0.559 6.559 15 C -0.133 4.133 16 C -0.082 4.082 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.119 4.119 21 C 0.054 3.946 22 C -0.202 4.202 23 C -0.202 4.202 24 H 0.262 0.738 25 H -0.028 1.028 26 H -0.004 1.004 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.376 0.624 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -19.541 2.048 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.079 3.921 10 N -0.238 5.238 11 C -0.103 4.103 12 C 0.071 3.929 13 H 0.104 0.896 14 O -0.365 6.365 15 C -0.171 4.171 16 C -0.100 4.100 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.055 4.055 22 C -0.240 4.240 23 C -0.241 4.241 24 H 0.071 0.929 25 H -0.010 1.010 26 H 0.014 0.986 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.224 0.776 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.145 0.855 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.136 0.864 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.928 -19.109 2.854 20.210 hybrid contribution -1.170 1.006 -0.867 1.770 sum 4.758 -18.102 1.987 18.822 Atomic orbital electron populations 1.70068 1.07542 1.27674 1.52474 1.25799 0.95633 1.02762 0.95371 0.85552 0.78232 0.78541 0.79018 1.19333 1.21021 1.19630 1.21290 0.93288 0.90783 1.48468 0.92504 1.19466 0.90207 0.89204 0.93228 1.62031 1.28114 1.04123 1.29508 1.22885 0.96438 0.91434 0.99510 1.21711 0.91090 0.91755 0.88377 0.89565 1.86561 1.38126 1.88315 1.23472 1.22187 0.98172 0.94745 1.01990 1.21988 0.97159 0.94151 0.96734 1.22460 1.00094 0.97381 0.96339 1.22134 0.99774 0.94370 0.99973 1.22126 0.97978 0.97600 0.98389 1.22416 0.98594 0.95408 0.99254 1.22635 0.98359 1.01750 0.82774 1.23401 1.04124 0.93872 1.02554 1.23307 0.99273 0.97967 1.03575 0.92892 1.00994 0.98563 0.95083 0.91957 0.77582 0.90824 0.91057 0.90646 0.91979 0.92662 0.91640 0.91952 0.91564 0.91362 0.91247 0.91630 0.85495 0.89551 0.88533 0.86354 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.64 13.29 21.45 0.28 -56.36 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.50 -28.42 6.88 25.60 0.18 -28.24 16 8 H 0.06 3.25 7.80 -2.91 -0.02 3.22 16 9 C 0.21 10.92 4.27 85.56 0.37 11.28 16 10 N -0.52 -22.28 4.67 -875.51 -4.09 -26.37 16 11 C 0.03 0.89 4.70 86.30 0.41 1.29 16 12 C 0.13 3.57 3.15 30.60 0.10 3.67 16 13 H 0.09 2.67 7.44 -2.39 -0.02 2.65 16 14 O -0.56 -14.79 9.79 -148.98 -1.46 -16.25 16 15 C -0.13 -2.79 4.39 30.60 0.13 -2.66 16 16 C -0.08 -1.57 2.83 -9.51 -0.03 -1.60 16 17 C -0.13 -2.50 5.66 31.67 0.18 -2.32 16 18 C -0.12 -2.08 6.80 31.32 0.21 -1.87 16 19 C -0.12 -1.84 6.80 31.32 0.21 -1.62 16 20 C -0.12 -1.91 6.27 31.66 0.20 -1.71 16 21 C 0.05 2.05 4.27 44.92 0.19 2.24 16 22 C -0.20 -8.16 8.87 30.60 0.27 -7.89 16 23 C -0.20 -6.67 8.56 30.60 0.26 -6.41 16 24 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 25 H -0.03 -1.56 6.04 -2.39 -0.01 -1.57 16 26 H 0.00 -0.22 7.79 -2.38 -0.02 -0.24 16 27 H 0.03 1.04 6.83 -2.39 -0.02 1.02 16 28 H 0.06 2.27 7.85 -2.38 -0.02 2.25 16 29 H 0.38 8.03 8.28 -74.06 -0.61 7.42 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.51 7.99 -2.39 -0.02 1.49 16 32 H 0.08 1.58 7.69 -2.39 -0.02 1.56 16 33 H 0.06 1.26 7.93 -2.39 -0.02 1.25 16 34 H 0.05 1.22 7.98 -2.39 -0.02 1.20 16 35 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.06 1.04 8.05 -2.39 -0.02 1.02 16 41 H 0.13 4.64 7.06 -2.38 -0.02 4.62 16 42 H 0.09 4.31 4.92 -2.39 -0.01 4.30 16 43 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.07 2.44 7.14 -2.39 -0.02 2.43 16 Total: -1.00 -63.37 341.73 0.24 -63.14 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.33 Total: 24.04 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 3.14 Total: -35.28 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -3.81 Total: -82.73 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.46 Total: -16.25 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -63.37 0.24 -63.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232135522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.712 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds