Wall clock time and date at job start Mon Mar 30 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46498 * 120.00239 * 269.72138 * 3 2 1 5 5 C 1.38848 * 119.99705 * 90.00219 * 3 2 1 6 6 N 1.30625 * 126.38760 * 0.02562 * 5 3 2 7 7 O 1.21290 * 110.12751 * 179.97438 * 6 5 3 8 8 C 1.33651 * 109.97948 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.46415 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47608 * 269.97850 * 9 8 7 11 11 C 1.52999 * 109.46841 * 299.99873 * 10 9 8 12 12 C 1.50698 * 109.47227 * 179.97438 * 10 9 8 13 13 H 1.08003 * 120.00117 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99779 * 180.02562 * 12 10 9 15 15 N 1.31505 * 120.00135 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99632 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.46992 * 90.00117 * 16 14 12 18 18 H 1.48504 * 109.46580 * 209.99513 * 16 14 12 19 19 H 1.48497 * 109.47056 * 329.99503 * 16 14 12 20 20 C 1.53005 * 109.46868 * 59.99841 * 10 9 8 21 21 C 1.52995 * 109.47000 * 59.99976 * 20 10 9 22 22 N 1.31046 * 107.07354 * 359.76967 * 8 7 6 23 23 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 25 25 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 26 26 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 27 27 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 28 28 H 1.08998 * 109.46661 * 89.99886 * 4 3 2 29 29 H 1.08993 * 109.47575 * 210.00600 * 4 3 2 30 30 H 1.09001 * 109.46870 * 330.00556 * 4 3 2 31 31 H 1.08998 * 109.46998 * 29.98105 * 9 8 7 32 32 H 1.09001 * 109.47275 * 149.97797 * 9 8 7 33 33 H 1.09004 * 109.47207 * 60.00279 * 11 10 9 34 34 H 1.09004 * 109.46920 * 179.97438 * 11 10 9 35 35 H 1.08994 * 109.47335 * 299.99972 * 11 10 9 36 36 H 0.97000 * 120.00429 * 180.02562 * 15 14 12 37 37 H 1.08994 * 109.47054 * 180.02562 * 20 10 9 38 38 H 1.08995 * 109.46998 * 300.00256 * 20 10 9 39 39 H 1.09004 * 109.47410 * 300.00119 * 21 20 10 40 40 H 1.09004 * 109.46814 * 60.00165 * 21 20 10 41 41 H 1.09000 * 109.47349 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2683 2.0699 -1.2687 5 6 2.2497 2.0357 1.2025 6 7 2.0758 1.5422 2.3994 7 8 2.3682 2.3682 3.2380 8 6 2.7680 3.4980 2.6463 9 6 3.2145 4.7610 3.3365 10 6 2.0058 5.6698 3.5692 11 6 1.3663 6.0222 2.2247 12 6 2.4523 6.9325 4.2600 13 1 3.4939 7.0727 4.5086 14 6 1.5308 7.9084 4.5756 15 7 0.2624 7.7375 4.2734 16 14 2.0842 9.4733 5.4325 17 1 2.4457 10.4932 4.4155 18 1 0.9803 9.9899 6.2809 19 1 3.2664 9.1808 6.2823 20 6 0.9832 4.9438 4.4457 21 6 1.6228 4.5914 5.7902 22 7 2.7027 3.2988 1.3527 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.3614 2.5831 -1.5882 29 1 3.0696 2.7967 -1.1359 30 1 2.5598 1.3420 -2.0258 31 1 3.6701 4.5100 4.2943 32 1 3.9430 5.2783 2.7121 33 1 1.0432 5.1086 1.7254 34 1 0.5049 6.6692 2.3905 35 1 2.0948 6.5393 1.6003 36 1 -0.3858 8.4242 4.4950 37 1 0.1219 5.5910 4.6112 38 1 0.6603 4.0303 3.9465 39 1 2.4839 3.9440 5.6244 40 1 1.9458 5.5050 6.2894 41 1 0.8942 4.0746 6.4148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233993571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:42 Heat of formation + Delta-G solvation = 68.246371 kcal Electronic energy + Delta-G solvation = -21530.786539 eV Core-core repulsion = 18449.334995 eV Total energy + Delta-G solvation = -3081.451544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.67755 -37.56992 -36.98231 -34.43535 -32.29893 -31.03689 -30.76348 -29.16992 -26.95053 -26.09781 -25.20864 -23.65638 -22.49216 -22.10509 -20.53263 -18.68089 -17.42733 -17.08625 -15.83338 -15.74755 -15.12110 -14.77737 -14.40056 -13.88786 -13.71233 -13.39221 -13.21936 -12.68158 -12.39230 -12.27048 -11.98488 -11.87632 -11.64897 -11.51414 -11.24103 -11.08862 -10.97590 -10.89632 -10.63959 -10.41614 -10.26748 -10.14417 -10.04505 -9.61736 -9.33136 -9.09048 -8.67224 -8.33543 -7.79156 -5.98635 -4.09050 1.93832 2.73216 3.07028 3.29377 3.37111 3.38977 3.69185 4.39785 4.53393 4.77707 5.04524 5.13978 5.27931 5.32197 5.41986 5.57599 5.65629 5.78102 5.83611 6.04002 6.08423 6.14539 6.17360 6.40149 6.55302 6.57765 6.60780 6.75711 6.99496 7.06205 7.08095 7.20223 7.36790 7.39726 7.48764 7.67600 7.73994 8.02015 8.17314 8.40182 8.89570 9.00060 9.55411 11.02499 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.004946 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.117680 B = 5659.867714 C = 5851.712964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 N -0.590 5.590 4 C 0.111 3.889 5 C 0.419 3.581 6 N -0.452 5.452 7 O 0.051 5.949 8 C 0.240 3.760 9 C -0.027 4.027 10 C 0.080 3.920 11 C -0.130 4.130 12 C -0.502 4.502 13 H 0.059 0.941 14 C 0.069 3.931 15 N -0.883 5.883 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.111 4.111 21 C -0.133 4.133 22 N -0.520 5.520 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.009 0.991 34 H 0.083 0.917 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.094 0.906 38 H 0.011 0.989 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -10.943 -6.998 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 N -0.319 5.319 4 C -0.032 4.032 5 C 0.059 3.941 6 N -0.183 5.183 7 O 0.009 5.991 8 C 0.021 3.979 9 C -0.066 4.066 10 C 0.078 3.922 11 C -0.188 4.188 12 C -0.540 4.540 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.521 5.521 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.149 4.149 21 C -0.190 4.190 22 N -0.260 5.260 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.028 0.972 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.310 -11.543 -7.287 13.845 hybrid contribution 0.118 0.950 0.388 1.032 sum 2.428 -10.593 -6.899 12.873 Atomic orbital electron populations 1.22210 0.96329 1.01845 1.02601 1.21351 0.94175 0.80636 1.02648 1.45091 1.73246 1.13196 1.00328 1.21540 1.01439 0.97098 0.83084 1.22043 0.96645 0.87534 0.87880 1.74701 1.30608 1.15065 0.97903 1.85245 1.61932 1.18909 1.33031 1.29037 0.90682 0.91392 0.86785 1.20902 1.01823 0.85179 0.98714 1.18176 0.88688 0.91864 0.93430 1.21824 1.02074 0.98850 0.96040 1.20901 0.94264 1.00749 1.38114 0.92306 1.24849 0.94856 0.98026 0.95565 1.69809 1.01261 1.33982 1.47024 0.86620 0.78297 0.83652 0.79586 1.20791 1.21349 1.19875 1.21582 1.01584 0.97039 0.94711 1.21664 0.98608 1.00460 0.98294 1.71887 1.25218 1.12958 1.15963 0.91723 0.92227 0.92543 0.90523 0.90563 0.93431 0.90619 0.91588 0.89108 0.88690 0.97197 0.89875 0.95251 0.92983 0.88748 0.97065 0.94761 0.91822 0.95662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.14 1.58 6.32 -4.04 -0.03 1.55 16 3 N -0.59 -8.73 2.99 -185.19 -0.55 -9.28 16 4 C 0.11 1.33 10.64 59.85 0.64 1.97 16 5 C 0.42 7.82 8.33 -321.19 -2.68 5.14 16 6 N -0.45 -8.87 11.55 28.62 0.33 -8.54 16 7 O 0.05 1.03 10.68 18.08 0.19 1.23 16 8 C 0.24 4.79 5.73 -12.99 -0.07 4.72 16 9 C -0.03 -0.54 4.50 -27.88 -0.13 -0.66 16 10 C 0.08 1.82 0.30 -155.66 -0.05 1.78 16 11 C -0.13 -3.11 7.98 37.16 0.30 -2.81 16 12 C -0.50 -12.38 6.75 -34.44 -0.23 -12.61 16 13 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 14 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 15 N -0.88 -23.35 9.35 55.43 0.52 -22.83 16 16 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C -0.11 -2.56 4.52 -26.73 -0.12 -2.68 16 21 C -0.13 -2.75 9.31 37.16 0.35 -2.41 16 22 N -0.52 -10.35 10.21 -12.68 -0.13 -10.48 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 27 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.99 7.68 -51.93 -0.40 0.60 16 30 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 31 H 0.09 1.66 6.43 -51.93 -0.33 1.33 16 32 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 33 H 0.01 0.22 6.68 -51.93 -0.35 -0.13 16 34 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 38 H 0.01 0.25 6.74 -51.93 -0.35 -0.10 16 39 H 0.03 0.64 6.43 -51.93 -0.33 0.31 16 40 H 0.06 1.38 7.22 -51.93 -0.37 1.01 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -27.82 325.25 -7.98 -35.80 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.49 Total: 0.04 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.73 Total: -5.89 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.17 Total: -51.14 kcal Atomic # 8 Polarization: 1.03 SS G_CDS: 0.19 Total: 1.23 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.82 -7.98 -35.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233993571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.045 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds