Wall clock time and date at job start Mon Mar 30 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46498 * 120.00239 * 269.72138 * 3 2 1 5 5 C 1.38848 * 119.99705 * 90.00219 * 3 2 1 6 6 N 1.30625 * 126.38760 * 0.02562 * 5 3 2 7 7 O 1.21290 * 110.12751 * 179.97438 * 6 5 3 8 8 C 1.33651 * 109.97948 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.46415 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47608 * 269.97850 * 9 8 7 11 11 C 1.52999 * 109.46841 * 299.99873 * 10 9 8 12 12 C 1.50698 * 109.47227 * 179.97438 * 10 9 8 13 13 H 1.08003 * 120.00117 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99779 * 180.02562 * 12 10 9 15 15 N 1.31505 * 120.00135 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99632 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.46992 * 90.00117 * 16 14 12 18 18 H 1.48504 * 109.46580 * 209.99513 * 16 14 12 19 19 H 1.48497 * 109.47056 * 329.99503 * 16 14 12 20 20 C 1.53005 * 109.46868 * 59.99841 * 10 9 8 21 21 C 1.52995 * 109.47000 * 59.99976 * 20 10 9 22 22 N 1.31046 * 107.07354 * 359.76967 * 8 7 6 23 23 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 25 25 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 26 26 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 27 27 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 28 28 H 1.08998 * 109.46661 * 89.99886 * 4 3 2 29 29 H 1.08993 * 109.47575 * 210.00600 * 4 3 2 30 30 H 1.09001 * 109.46870 * 330.00556 * 4 3 2 31 31 H 1.08998 * 109.46998 * 29.98105 * 9 8 7 32 32 H 1.09001 * 109.47275 * 149.97797 * 9 8 7 33 33 H 1.09004 * 109.47207 * 60.00279 * 11 10 9 34 34 H 1.09004 * 109.46920 * 179.97438 * 11 10 9 35 35 H 1.08994 * 109.47335 * 299.99972 * 11 10 9 36 36 H 0.97000 * 120.00429 * 180.02562 * 15 14 12 37 37 H 1.08994 * 109.47054 * 180.02562 * 20 10 9 38 38 H 1.08995 * 109.46998 * 300.00256 * 20 10 9 39 39 H 1.09004 * 109.47410 * 300.00119 * 21 20 10 40 40 H 1.09004 * 109.46814 * 60.00165 * 21 20 10 41 41 H 1.09000 * 109.47349 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2683 2.0699 -1.2687 5 6 2.2497 2.0357 1.2025 6 7 2.0758 1.5422 2.3994 7 8 2.3682 2.3682 3.2380 8 6 2.7680 3.4980 2.6463 9 6 3.2145 4.7610 3.3365 10 6 2.0058 5.6698 3.5692 11 6 1.3663 6.0222 2.2247 12 6 2.4523 6.9325 4.2600 13 1 3.4939 7.0727 4.5086 14 6 1.5308 7.9084 4.5756 15 7 0.2624 7.7375 4.2734 16 14 2.0842 9.4733 5.4325 17 1 2.4457 10.4932 4.4155 18 1 0.9803 9.9899 6.2809 19 1 3.2664 9.1808 6.2823 20 6 0.9832 4.9438 4.4457 21 6 1.6228 4.5914 5.7902 22 7 2.7027 3.2988 1.3527 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 1.3614 2.5831 -1.5882 29 1 3.0696 2.7967 -1.1359 30 1 2.5598 1.3420 -2.0258 31 1 3.6701 4.5100 4.2943 32 1 3.9430 5.2783 2.7121 33 1 1.0432 5.1086 1.7254 34 1 0.5049 6.6692 2.3905 35 1 2.0948 6.5393 1.6003 36 1 -0.3858 8.4242 4.4950 37 1 0.1219 5.5910 4.6112 38 1 0.6603 4.0303 3.9465 39 1 2.4839 3.9440 5.6244 40 1 1.9458 5.5050 6.2894 41 1 0.8942 4.0746 6.4148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233993571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:42 Heat of formation + Delta-G solvation = 54.577682 kcal Electronic energy + Delta-G solvation = -21531.379258 eV Core-core repulsion = 18449.334995 eV Total energy + Delta-G solvation = -3082.044263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.15538 -38.81376 -38.68271 -35.87441 -34.03475 -32.63718 -31.80107 -30.91860 -28.52595 -27.35005 -27.13057 -24.78942 -23.99479 -23.85976 -21.90463 -20.36747 -18.94455 -18.45611 -17.66319 -17.07568 -16.64578 -16.28980 -15.57501 -15.41356 -15.17288 -14.87837 -14.65928 -14.17936 -13.79402 -13.58107 -13.32250 -13.29768 -13.06817 -12.79367 -12.76021 -12.64671 -12.60348 -12.41842 -12.20612 -12.09644 -12.05648 -11.77657 -11.71028 -11.34026 -11.14546 -10.81881 -10.51566 -10.28147 -9.02952 -7.92479 -6.07695 0.41592 1.50266 1.53341 1.55056 1.60738 1.64387 2.16394 2.54182 3.12142 3.32667 3.69865 4.03637 4.23587 4.35999 4.43017 4.46936 4.47599 4.52343 4.63402 4.66502 4.79100 4.83290 4.88617 4.91692 4.99029 5.00385 5.08246 5.16453 5.23800 5.28181 5.30738 5.52630 5.69492 5.76358 5.83266 5.99991 6.08567 6.13794 6.25923 6.47324 6.97108 7.52338 7.59151 9.07251 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.004946 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.117680 B = 5659.867714 C = 5851.712964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 N -0.589 5.589 4 C 0.107 3.893 5 C 0.414 3.586 6 N -0.467 5.467 7 O 0.040 5.960 8 C 0.236 3.764 9 C -0.020 4.020 10 C 0.076 3.924 11 C -0.116 4.116 12 C -0.506 4.506 13 H 0.065 0.935 14 C 0.027 3.973 15 N -0.907 5.907 16 Si 0.944 3.056 17 H -0.283 1.283 18 H -0.293 1.293 19 H -0.265 1.265 20 C -0.104 4.104 21 C -0.125 4.125 22 N -0.533 5.533 23 H 0.090 0.910 24 H 0.023 0.977 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.006 0.994 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.256 0.744 37 H 0.063 0.937 38 H 0.003 0.997 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 -12.040 -7.765 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.317 5.317 4 C -0.035 4.035 5 C 0.054 3.946 6 N -0.201 5.201 7 O 0.001 5.999 8 C 0.017 3.983 9 C -0.059 4.059 10 C 0.074 3.926 11 C -0.174 4.174 12 C -0.544 4.544 13 H 0.083 0.917 14 C -0.172 4.172 15 N -0.546 5.546 16 Si 0.771 3.229 17 H -0.209 1.209 18 H -0.219 1.219 19 H -0.189 1.189 20 C -0.142 4.142 21 C -0.182 4.182 22 N -0.273 5.273 23 H 0.109 0.891 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.022 0.978 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.407 -12.648 -8.062 15.381 hybrid contribution -0.261 1.226 0.519 1.356 sum 3.145 -11.423 -7.543 14.045 Atomic orbital electron populations 1.22160 0.95994 1.03094 1.01097 1.21632 0.94389 0.79170 1.04059 1.45653 1.72197 1.14136 0.99726 1.21737 1.00999 0.98043 0.82719 1.22455 0.95870 0.87280 0.89031 1.74666 1.31924 1.15236 0.98294 1.85210 1.62287 1.19016 1.33423 1.29003 0.90835 0.91505 0.86998 1.20755 1.00491 0.84696 0.99912 1.18138 0.89788 0.92159 0.92467 1.21661 1.00972 0.97953 0.96815 1.21178 0.94430 1.01219 1.37557 0.91685 1.25472 0.94914 1.00504 0.96352 1.69961 1.02076 1.34532 1.48064 0.85771 0.77878 0.80653 0.78579 1.20949 1.21938 1.18907 1.21441 1.00756 0.95913 0.96076 1.21571 0.99439 1.00379 0.96854 1.71867 1.25680 1.13788 1.16012 0.89145 0.95778 0.91860 0.86417 0.91774 0.93464 0.92082 0.87441 0.87388 0.87805 0.97533 0.92511 0.95407 0.93437 0.91835 0.97792 0.92863 0.92904 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.24 71.98 0.74 -2.63 16 2 C 0.13 2.70 6.32 86.38 0.55 3.24 16 3 N -0.59 -16.37 2.99 -742.63 -2.22 -18.58 16 4 C 0.11 2.31 10.64 127.77 1.36 3.67 16 5 C 0.41 15.15 8.33 260.92 2.17 17.32 16 6 N -0.47 -18.18 11.55 -66.71 -0.77 -18.95 16 7 O 0.04 1.60 10.68 74.77 0.80 2.40 16 8 C 0.24 9.29 5.73 88.36 0.51 9.79 16 9 C -0.02 -0.76 4.50 29.85 0.13 -0.62 16 10 C 0.08 3.45 0.30 -52.93 -0.02 3.44 16 11 C -0.12 -5.62 7.98 71.98 0.57 -5.04 16 12 C -0.51 -24.62 6.75 25.60 0.17 -24.44 16 13 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 14 C 0.03 1.35 5.15 84.66 0.44 1.79 16 15 N -0.91 -48.82 9.35 21.45 0.20 -48.62 16 16 Si 0.94 40.98 29.54 68.60 2.03 43.01 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 C -0.10 -4.81 4.52 30.59 0.14 -4.67 16 21 C -0.13 -5.06 9.31 71.98 0.67 -4.39 16 22 N -0.53 -20.92 10.21 -311.46 -3.18 -24.10 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.12 1.53 7.89 -2.39 -0.02 1.51 16 27 H 0.06 1.51 7.69 -2.39 -0.02 1.50 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 30 H 0.11 1.43 7.89 -2.39 -0.02 1.41 16 31 H 0.11 3.75 6.43 -2.39 -0.02 3.73 16 32 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.01 0.28 6.68 -2.38 -0.02 0.26 16 34 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 37 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 38 H 0.00 0.16 6.74 -2.39 -0.02 0.14 16 39 H 0.05 1.92 6.43 -2.39 -0.02 1.91 16 40 H 0.05 2.24 7.22 -2.38 -0.02 2.22 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -60.01 325.25 5.30 -54.71 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.01 Total: 12.67 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 7.43 Total: -2.54 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -5.97 Total: -110.26 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.80 Total: 2.40 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -60.01 5.30 -54.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233993571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.289 kcal (2) G-P(sol) polarization free energy of solvation -60.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds