Wall clock time and date at job start Mon Mar 30 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47160 * 2 1 4 4 C 1.46503 * 119.99530 * 269.99745 * 3 2 1 5 5 C 1.38836 * 120.00120 * 89.99653 * 3 2 1 6 6 N 1.30631 * 126.39062 * 359.97438 * 5 3 2 7 7 O 1.21289 * 110.12643 * 180.02562 * 6 5 3 8 8 C 1.33652 * 109.98412 * 359.97438 * 7 6 5 9 9 C 1.50694 * 126.46469 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47168 * 270.02453 * 9 8 7 11 11 C 1.53000 * 109.46989 * 59.99989 * 10 9 8 12 12 C 1.50694 * 109.47168 * 179.97438 * 10 9 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53000 * 109.47124 * 300.00314 * 10 9 8 21 21 C 1.53000 * 109.46922 * 299.99716 * 20 10 9 22 22 N 1.31051 * 107.07022 * 0.26368 * 8 7 6 23 23 H 1.08992 * 109.46972 * 60.00214 * 1 2 3 24 24 H 1.09000 * 109.46829 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46657 * 300.00282 * 1 2 3 26 26 H 1.09005 * 109.47365 * 239.99607 * 2 1 3 27 27 H 1.09003 * 109.47073 * 119.99355 * 2 1 3 28 28 H 1.08994 * 109.47167 * 270.00139 * 4 3 2 29 29 H 1.09005 * 109.47315 * 29.99970 * 4 3 2 30 30 H 1.08994 * 109.46888 * 149.99705 * 4 3 2 31 31 H 1.09002 * 109.47054 * 150.02707 * 9 8 7 32 32 H 1.08998 * 109.47224 * 30.02195 * 9 8 7 33 33 H 1.08997 * 109.47359 * 180.02562 * 11 10 9 34 34 H 1.09007 * 109.47356 * 300.00069 * 11 10 9 35 35 H 1.09000 * 109.47156 * 59.99794 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47089 * 59.99697 * 20 10 9 38 38 H 1.08995 * 109.47131 * 179.97438 * 20 10 9 39 39 H 1.08998 * 109.47223 * 299.99899 * 21 20 10 40 40 H 1.08995 * 109.47095 * 60.00128 * 21 20 10 41 41 H 1.09000 * 109.47156 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 2.2497 2.0358 1.2023 6 7 2.0748 1.5427 2.3993 7 8 2.3666 2.3691 3.2378 8 6 2.7668 3.4987 2.6460 9 6 3.2137 4.7616 3.3361 10 6 2.0051 5.6702 3.5697 11 6 0.9831 4.9441 4.4467 12 6 2.4519 6.9329 4.2603 13 1 3.4938 7.0735 4.5076 14 6 1.5306 7.9087 4.5766 15 7 0.2619 7.7378 4.2750 16 14 2.0844 9.4735 5.4333 17 1 0.9113 10.3555 5.6599 18 1 2.7056 9.1304 6.7377 19 1 3.0765 10.1789 4.5829 20 6 1.3647 6.0227 2.2256 21 6 2.3867 6.7488 1.3486 22 7 2.6923 3.3025 1.3524 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5137 0.8901 28 1 3.2920 1.9004 -1.5834 29 1 1.5818 1.6876 -2.0285 30 1 2.0956 3.1409 -1.1386 31 1 3.9418 5.2789 2.7113 32 1 3.6698 4.5105 4.2937 33 1 0.1218 5.5912 4.6127 34 1 0.6598 4.0306 3.9475 35 1 1.4393 4.6930 5.4042 36 1 -0.3863 8.4241 4.4979 37 1 1.0415 5.1092 1.7265 38 1 0.5035 6.6696 2.3920 39 1 2.7100 7.6623 1.8477 40 1 3.2478 6.1015 1.1822 41 1 1.9304 7.0003 0.3912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233993769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:45 Heat of formation + Delta-G solvation = 68.486403 kcal Electronic energy + Delta-G solvation = -21573.439609 eV Core-core repulsion = 18491.998473 eV Total energy + Delta-G solvation = -3081.441135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.66987 -37.56303 -36.99782 -34.38698 -32.29059 -31.00721 -30.78473 -29.17301 -26.85571 -26.19365 -25.20543 -23.63111 -22.57685 -21.97090 -20.52553 -18.67242 -17.42443 -17.08969 -15.84816 -15.73888 -15.10562 -14.78193 -14.40845 -13.84245 -13.69554 -13.45108 -13.24909 -12.65067 -12.28779 -12.23792 -11.93707 -11.86687 -11.72122 -11.38312 -11.33863 -11.12562 -10.94009 -10.86721 -10.68323 -10.38044 -10.24292 -10.21563 -10.09540 -9.48568 -9.31695 -9.09275 -8.66870 -8.32664 -7.78460 -5.98255 -4.08717 1.94231 2.73847 3.08032 3.30891 3.36349 3.38381 3.69668 4.40061 4.53870 4.79650 5.04012 5.13549 5.28173 5.31509 5.42952 5.57081 5.64923 5.78214 5.84745 6.04519 6.09064 6.14403 6.18780 6.44573 6.55899 6.62308 6.66104 6.81762 6.92616 7.09253 7.12898 7.15294 7.39140 7.40033 7.52540 7.68253 7.75739 8.01793 8.17805 8.40605 8.89652 9.00562 9.55642 11.02794 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.034632 B = 0.004976 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.309327 B = 5625.273016 C = 5784.330791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 N -0.590 5.590 4 C 0.111 3.889 5 C 0.419 3.581 6 N -0.453 5.453 7 O 0.049 5.951 8 C 0.240 3.760 9 C -0.027 4.027 10 C 0.080 3.920 11 C -0.135 4.135 12 C -0.503 4.503 13 H 0.058 0.942 14 C 0.069 3.931 15 N -0.883 5.883 16 Si 0.891 3.109 17 H -0.289 1.289 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.107 4.107 21 C -0.128 4.128 22 N -0.516 5.516 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.004 0.996 35 H 0.031 0.969 36 H 0.260 0.740 37 H 0.016 0.984 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -10.421 -7.994 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 N -0.318 5.318 4 C -0.032 4.032 5 C 0.059 3.941 6 N -0.184 5.184 7 O 0.007 5.993 8 C 0.020 3.980 9 C -0.067 4.067 10 C 0.078 3.922 11 C -0.193 4.193 12 C -0.541 4.541 13 H 0.076 0.924 14 C -0.133 4.133 15 N -0.521 5.521 16 Si 0.719 3.281 17 H -0.214 1.214 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.145 4.145 21 C -0.186 4.186 22 N -0.256 5.256 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.263 -11.013 -8.287 13.967 hybrid contribution 0.158 0.921 0.422 1.026 sum 2.422 -10.092 -7.864 13.022 Atomic orbital electron populations 1.22213 0.96320 1.01858 1.02591 1.21332 0.94105 0.80725 1.02670 1.45088 1.73344 1.13086 1.00330 1.21534 1.00057 0.98436 0.83174 1.22064 0.96702 0.87486 0.87869 1.74701 1.30662 1.15056 0.97932 1.85238 1.61931 1.19049 1.33122 1.29046 0.90792 0.91308 0.86836 1.20907 1.01950 0.85119 0.98680 1.18172 0.88763 0.91901 0.93333 1.21899 1.02289 0.97213 0.97906 1.20862 0.94215 1.00857 1.38160 0.92370 1.24850 0.94866 0.98066 0.95494 1.69806 1.01247 1.34145 1.46888 0.86678 0.78035 0.83257 0.80144 1.21433 1.20304 1.20297 1.21510 1.00149 0.98140 0.94673 1.21604 0.98815 1.00820 0.97319 1.71896 1.25175 1.12679 1.15866 0.92563 0.91706 0.92213 0.90536 0.90539 0.93512 0.91607 0.90458 0.88252 0.89529 0.89474 0.97668 0.95029 0.92934 0.96576 0.89213 0.92310 0.94371 0.96101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.13 1.57 6.28 -4.04 -0.03 1.55 16 3 N -0.59 -8.69 2.98 -185.18 -0.55 -9.25 16 4 C 0.11 1.33 10.60 59.85 0.63 1.96 16 5 C 0.42 7.76 8.33 -321.20 -2.68 5.08 16 6 N -0.45 -8.85 11.55 28.63 0.33 -8.52 16 7 O 0.05 0.98 10.68 18.08 0.19 1.18 16 8 C 0.24 4.75 5.75 -12.99 -0.07 4.67 16 9 C -0.03 -0.54 4.50 -27.89 -0.13 -0.67 16 10 C 0.08 1.82 0.30 -155.66 -0.05 1.77 16 11 C -0.14 -3.18 7.99 37.16 0.30 -2.88 16 12 C -0.50 -12.39 6.75 -34.44 -0.23 -12.62 16 13 H 0.06 1.40 7.74 -52.49 -0.41 0.99 16 14 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 15 N -0.88 -23.35 9.35 55.43 0.52 -22.83 16 16 Si 0.89 20.10 29.54 -169.99 -5.02 15.07 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.11 -2.48 4.50 -26.73 -0.12 -2.60 16 21 C -0.13 -2.72 9.31 37.16 0.35 -2.37 16 22 N -0.52 -10.14 10.18 -12.68 -0.13 -10.27 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 27 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.08 1.07 7.68 -51.93 -0.40 0.67 16 31 H 0.10 1.88 6.43 -51.93 -0.33 1.55 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 34 H 0.00 0.10 6.74 -51.93 -0.35 -0.25 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.02 0.37 6.66 -51.93 -0.35 0.02 16 38 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 39 H 0.06 1.31 7.22 -51.93 -0.37 0.93 16 40 H 0.04 0.76 6.43 -51.93 -0.33 0.42 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -27.62 325.49 -8.00 -35.62 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.51 Total: 0.03 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.74 Total: -5.95 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.17 Total: -50.86 kcal Atomic # 8 Polarization: 0.98 SS G_CDS: 0.19 Total: 1.18 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.62 -8.00 -35.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233993769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.107 kcal (2) G-P(sol) polarization free energy of solvation -27.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds