Wall clock time and date at job start Mon Mar 30 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47160 * 2 1 4 4 C 1.46503 * 119.99530 * 269.99745 * 3 2 1 5 5 C 1.38836 * 120.00120 * 89.99653 * 3 2 1 6 6 N 1.30631 * 126.39062 * 359.97438 * 5 3 2 7 7 O 1.21289 * 110.12643 * 180.02562 * 6 5 3 8 8 C 1.33652 * 109.98412 * 359.97438 * 7 6 5 9 9 C 1.50694 * 126.46469 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47168 * 270.02453 * 9 8 7 11 11 C 1.53000 * 109.46989 * 59.99989 * 10 9 8 12 12 C 1.50694 * 109.47168 * 179.97438 * 10 9 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.53000 * 109.47124 * 300.00314 * 10 9 8 21 21 C 1.53000 * 109.46922 * 299.99716 * 20 10 9 22 22 N 1.31051 * 107.07022 * 0.26368 * 8 7 6 23 23 H 1.08992 * 109.46972 * 60.00214 * 1 2 3 24 24 H 1.09000 * 109.46829 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46657 * 300.00282 * 1 2 3 26 26 H 1.09005 * 109.47365 * 239.99607 * 2 1 3 27 27 H 1.09003 * 109.47073 * 119.99355 * 2 1 3 28 28 H 1.08994 * 109.47167 * 270.00139 * 4 3 2 29 29 H 1.09005 * 109.47315 * 29.99970 * 4 3 2 30 30 H 1.08994 * 109.46888 * 149.99705 * 4 3 2 31 31 H 1.09002 * 109.47054 * 150.02707 * 9 8 7 32 32 H 1.08998 * 109.47224 * 30.02195 * 9 8 7 33 33 H 1.08997 * 109.47359 * 180.02562 * 11 10 9 34 34 H 1.09007 * 109.47356 * 300.00069 * 11 10 9 35 35 H 1.09000 * 109.47156 * 59.99794 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47089 * 59.99697 * 20 10 9 38 38 H 1.08995 * 109.47131 * 179.97438 * 20 10 9 39 39 H 1.08998 * 109.47223 * 299.99899 * 21 20 10 40 40 H 1.08995 * 109.47095 * 60.00128 * 21 20 10 41 41 H 1.09000 * 109.47156 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 2.2497 2.0358 1.2023 6 7 2.0748 1.5427 2.3993 7 8 2.3666 2.3691 3.2378 8 6 2.7668 3.4987 2.6460 9 6 3.2137 4.7616 3.3361 10 6 2.0051 5.6702 3.5697 11 6 0.9831 4.9441 4.4467 12 6 2.4519 6.9329 4.2603 13 1 3.4938 7.0735 4.5076 14 6 1.5306 7.9087 4.5766 15 7 0.2619 7.7378 4.2750 16 14 2.0844 9.4735 5.4333 17 1 0.9113 10.3555 5.6599 18 1 2.7056 9.1304 6.7377 19 1 3.0765 10.1789 4.5829 20 6 1.3647 6.0227 2.2256 21 6 2.3867 6.7488 1.3486 22 7 2.6923 3.3025 1.3524 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5137 0.8901 28 1 3.2920 1.9004 -1.5834 29 1 1.5818 1.6876 -2.0285 30 1 2.0956 3.1409 -1.1386 31 1 3.9418 5.2789 2.7113 32 1 3.6698 4.5105 4.2937 33 1 0.1218 5.5912 4.6127 34 1 0.6598 4.0306 3.9475 35 1 1.4393 4.6930 5.4042 36 1 -0.3863 8.4241 4.4979 37 1 1.0415 5.1092 1.7265 38 1 0.5035 6.6696 2.3920 39 1 2.7100 7.6623 1.8477 40 1 3.2478 6.1015 1.1822 41 1 1.9304 7.0003 0.3912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233993769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:44 Heat of formation + Delta-G solvation = 55.056882 kcal Electronic energy + Delta-G solvation = -21574.021956 eV Core-core repulsion = 18491.998473 eV Total energy + Delta-G solvation = -3082.023483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.13911 -38.79492 -38.69783 -35.82020 -34.01015 -32.65119 -31.78991 -30.92543 -28.44993 -27.43338 -27.09422 -24.75146 -24.12583 -23.69744 -21.88858 -20.35397 -18.93276 -18.45056 -17.65076 -17.07805 -16.65193 -16.25944 -15.53774 -15.36898 -15.24361 -14.93959 -14.68021 -14.05384 -13.72150 -13.51322 -13.38772 -13.21904 -13.05802 -12.83306 -12.72391 -12.68239 -12.61538 -12.42533 -12.18463 -12.10669 -12.06284 -11.84681 -11.66627 -11.25619 -11.12845 -10.82078 -10.50674 -10.26545 -9.01231 -7.91929 -6.07144 0.42830 1.52235 1.53649 1.56467 1.59096 1.65762 2.18033 2.54579 3.13530 3.33048 3.71390 4.04236 4.23317 4.38045 4.44449 4.47314 4.48222 4.52094 4.65882 4.68812 4.80841 4.86332 4.89954 4.91638 4.97091 5.05131 5.06910 5.17169 5.24527 5.27056 5.34074 5.54272 5.70221 5.76942 5.85287 6.00938 6.09550 6.15278 6.27113 6.48100 6.97467 7.53551 7.59591 9.07491 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.034632 B = 0.004976 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.309327 B = 5625.273016 C = 5784.330791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.589 5.589 4 C 0.107 3.893 5 C 0.414 3.586 6 N -0.469 5.469 7 O 0.035 5.965 8 C 0.235 3.765 9 C -0.020 4.020 10 C 0.075 3.925 11 C -0.124 4.124 12 C -0.507 4.507 13 H 0.064 0.936 14 C 0.027 3.973 15 N -0.907 5.907 16 Si 0.944 3.056 17 H -0.295 1.295 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.097 4.097 21 C -0.117 4.117 22 N -0.525 5.525 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.023 0.977 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.002 0.998 35 H 0.035 0.965 36 H 0.256 0.744 37 H 0.008 0.992 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 -11.239 -9.294 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.317 5.317 4 C -0.035 4.035 5 C 0.054 3.946 6 N -0.203 5.203 7 O -0.004 6.004 8 C 0.015 3.985 9 C -0.059 4.059 10 C 0.074 3.926 11 C -0.182 4.182 12 C -0.545 4.545 13 H 0.083 0.917 14 C -0.172 4.172 15 N -0.546 5.546 16 Si 0.771 3.229 17 H -0.221 1.221 18 H -0.199 1.199 19 H -0.198 1.198 20 C -0.136 4.136 21 C -0.174 4.174 22 N -0.265 5.265 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.042 0.958 26 H 0.134 0.866 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.021 0.979 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.372 -11.838 -9.596 15.607 hybrid contribution -0.222 1.096 0.743 1.343 sum 3.150 -10.741 -8.853 14.271 Atomic orbital electron populations 1.22162 0.95871 1.03100 1.01187 1.21601 0.94406 0.79282 1.03960 1.45644 1.72266 1.14050 0.99742 1.21723 1.01920 0.97214 0.82630 1.22470 0.95890 0.87277 0.88967 1.74671 1.32055 1.15241 0.98361 1.85206 1.62358 1.19241 1.33589 1.29016 0.90973 0.91389 0.87084 1.20759 1.00621 0.84664 0.99879 1.18137 0.89715 0.92050 0.92697 1.21761 1.01602 0.96524 0.98339 1.21149 0.94394 1.01316 1.37626 0.91742 1.25470 0.94928 1.00533 0.96281 1.69962 1.02042 1.34651 1.47937 0.85836 0.77351 0.80353 0.79375 1.22107 1.19879 1.19791 1.21354 0.99621 0.97214 0.95368 1.21476 0.98683 1.00124 0.97151 1.71873 1.25519 1.13393 1.15747 0.91684 0.89197 0.95755 0.86587 0.91843 0.92072 0.88229 0.92610 0.87241 0.87937 0.92123 0.97863 0.94604 0.93447 0.97316 0.92332 0.93529 0.93000 0.95090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 10.24 71.98 0.74 -2.57 16 2 C 0.13 2.69 6.28 86.38 0.54 3.23 16 3 N -0.59 -16.20 2.98 -742.59 -2.22 -18.42 16 4 C 0.11 2.28 10.60 127.77 1.35 3.64 16 5 C 0.41 15.02 8.33 260.92 2.17 17.19 16 6 N -0.47 -18.25 11.55 -66.69 -0.77 -19.02 16 7 O 0.04 1.42 10.68 74.76 0.80 2.21 16 8 C 0.24 9.18 5.75 88.35 0.51 9.69 16 9 C -0.02 -0.78 4.50 29.85 0.13 -0.65 16 10 C 0.08 3.42 0.30 -52.93 -0.02 3.41 16 11 C -0.12 -5.92 7.99 71.98 0.58 -5.34 16 12 C -0.51 -24.65 6.75 25.60 0.17 -24.47 16 13 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 14 C 0.03 1.37 5.15 84.66 0.44 1.81 16 15 N -0.91 -48.77 9.35 21.45 0.20 -48.57 16 16 Si 0.94 40.99 29.54 68.60 2.03 43.01 16 17 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 20 C -0.10 -4.54 4.50 30.59 0.14 -4.40 16 21 C -0.12 -4.86 9.31 71.98 0.67 -4.19 16 22 N -0.52 -20.19 10.18 -311.44 -3.17 -23.36 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.12 1.54 8.07 -2.38 -0.02 1.52 16 27 H 0.06 1.51 7.69 -2.39 -0.02 1.49 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 1.45 8.07 -2.38 -0.02 1.43 16 30 H 0.05 1.45 7.68 -2.39 -0.02 1.43 16 31 H 0.11 3.95 6.43 -2.39 -0.02 3.94 16 32 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 34 H 0.00 0.11 6.74 -2.38 -0.02 0.10 16 35 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 37 H 0.01 0.39 6.66 -2.39 -0.02 0.37 16 38 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 39 H 0.05 2.03 7.22 -2.39 -0.02 2.01 16 40 H 0.05 1.98 6.43 -2.39 -0.02 1.97 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -59.41 325.49 5.30 -54.12 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.01 Total: 12.68 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 7.43 Total: -2.66 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -5.96 Total: -109.36 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.80 Total: 2.21 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -59.41 5.30 -54.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233993769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.172 kcal (2) G-P(sol) polarization free energy of solvation -59.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds