Wall clock time and date at job start Mon Mar 30 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99902 * 2 1 4 4 H 1.48501 * 109.46952 * 269.99631 * 3 2 1 5 5 H 1.48499 * 109.46931 * 29.99472 * 3 2 1 6 6 H 1.48501 * 109.47094 * 149.99499 * 3 2 1 7 7 C 1.37875 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99694 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00353 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46942 * 179.97438 * 9 7 2 11 11 C 1.46809 * 110.99634 * 169.99753 * 10 9 7 12 12 H 1.09007 * 109.35449 * 65.97969 * 11 10 9 13 13 C 1.52975 * 109.70555 * 305.94636 * 11 10 9 14 14 C 1.53019 * 109.40430 * 179.72142 * 13 11 10 15 15 C 1.52984 * 109.54036 * 59.92333 * 14 13 11 16 16 C 1.53027 * 109.53312 * 300.15624 * 15 14 13 17 17 C 1.52971 * 109.38926 * 59.93952 * 16 15 14 18 18 H 1.08999 * 109.50390 * 59.82501 * 17 16 15 19 19 C 1.53079 * 109.59721 * 180.02562 * 17 16 15 20 20 C 1.53149 * 109.09433 * 177.62650 * 19 17 16 21 21 C 1.46870 * 111.00282 * 294.12464 * 10 9 7 22 22 H 1.09000 * 109.44960 * 54.25209 * 21 10 9 23 23 C 1.50696 * 109.43395 * 294.31161 * 21 10 9 24 24 O 1.20830 * 120.00214 * 0.63345 * 23 21 10 25 25 O 1.34231 * 120.00214 * 180.62870 * 23 21 10 26 26 H 0.96992 * 119.99992 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.46905 * 59.99827 * 9 7 2 28 28 H 1.09000 * 109.46944 * 300.00461 * 9 7 2 29 29 H 1.09006 * 109.47703 * 299.69619 * 13 11 10 30 30 H 1.08995 * 109.48233 * 59.73824 * 13 11 10 31 31 H 1.08997 * 109.45952 * 179.97438 * 14 13 11 32 32 H 1.09005 * 109.45848 * 299.91694 * 14 13 11 33 33 H 1.08997 * 109.46502 * 60.17966 * 15 14 13 34 34 H 1.09000 * 109.46102 * 180.14297 * 15 14 13 35 35 H 1.08998 * 109.48726 * 179.91314 * 16 15 14 36 36 H 1.08998 * 109.48750 * 299.94968 * 16 15 14 37 37 H 1.08998 * 109.53482 * 297.51004 * 19 17 16 38 38 H 1.08991 * 109.53654 * 57.74233 * 19 17 16 39 39 H 1.09000 * 109.49740 * 62.36280 * 20 19 17 40 40 H 1.09005 * 109.49070 * 182.44678 * 20 19 17 41 41 H 0.96698 * 117.00283 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0022 11 6 5.4493 -2.6252 -0.2352 12 1 5.9681 -2.1638 0.6051 13 6 5.7858 -1.8661 -1.5201 14 6 7.2968 -1.9127 -1.7572 15 6 7.7493 -3.3681 -1.8894 16 6 7.4092 -4.1284 -0.6057 17 6 5.8980 -4.0819 -0.3732 18 1 5.3855 -4.5418 -1.2181 19 6 5.5524 -4.8407 0.9106 20 6 4.0456 -4.7367 1.1638 21 6 3.6479 -3.2612 1.2539 22 1 2.5731 -3.1845 1.4182 23 6 4.3785 -2.6133 2.4017 24 8 5.1085 -1.6721 2.1989 25 8 4.2182 -3.0817 3.6494 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8753 -0.6803 -0.8888 29 1 5.2713 -2.3301 -2.3616 30 1 5.4646 -0.8290 -1.4243 31 1 7.5375 -1.3725 -2.6727 32 1 7.8109 -1.4478 -0.9159 33 1 7.2380 -3.8323 -2.7327 34 1 8.8261 -3.3999 -2.0557 35 1 7.7305 -5.1655 -0.7013 36 1 7.9214 -3.6653 0.2377 37 1 5.8321 -5.8885 0.8011 38 1 6.0939 -4.4035 1.7493 39 1 3.5053 -5.2095 0.3437 40 1 3.7986 -5.2381 2.0997 41 1 4.7078 -2.6338 4.3528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250857554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:49 Heat of formation + Delta-G solvation = -98.851152 kcal Electronic energy + Delta-G solvation = -22472.507076 eV Core-core repulsion = 19351.516888 eV Total energy + Delta-G solvation = -3120.990187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82620 -38.68518 -36.09107 -35.29910 -33.92112 -32.24295 -30.18606 -29.52265 -27.52899 -24.86361 -23.04290 -22.59975 -21.69622 -20.22857 -19.58662 -19.25709 -17.53903 -16.95295 -15.72031 -15.64201 -15.13248 -14.68996 -14.40466 -14.10726 -14.06992 -13.66163 -13.16072 -12.88696 -12.65659 -12.54837 -12.28533 -11.91775 -11.59730 -11.30948 -11.26389 -11.19028 -10.91753 -10.75434 -10.66156 -10.57524 -10.50244 -10.24744 -9.94607 -9.82681 -9.66034 -9.38950 -9.18452 -8.54013 -7.39425 -6.05626 -4.02420 2.69168 3.29950 3.37457 3.44660 3.55182 4.43536 4.47252 4.85198 4.92025 5.02659 5.16781 5.28085 5.34254 5.39453 5.51983 5.58504 5.69120 5.74828 5.80531 5.84980 5.93863 5.98530 6.04153 6.16988 6.21738 6.26257 6.30256 6.36311 6.39387 6.50547 6.56518 6.64422 6.78378 6.86460 6.99517 7.19896 7.59768 7.82207 7.95521 8.37000 8.62697 9.00453 9.56921 11.07097 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.008383 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.836659 B = 3339.482304 C = 4123.868310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.867 3.133 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.514 4.514 8 H 0.081 0.919 9 C 0.142 3.858 10 N -0.489 5.489 11 C 0.064 3.936 12 H 0.070 0.930 13 C -0.113 4.113 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.111 4.111 17 C -0.081 4.081 18 H 0.078 0.922 19 C -0.118 4.118 20 C -0.106 4.106 21 C 0.102 3.898 22 H 0.133 0.867 23 C 0.456 3.544 24 O -0.514 6.514 25 O -0.524 6.524 26 H 0.263 0.737 27 H 0.015 0.985 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.648 -9.013 1.570 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.552 4.552 8 H 0.099 0.901 9 C 0.017 3.983 10 N -0.212 5.212 11 C -0.044 4.044 12 H 0.088 0.912 13 C -0.151 4.151 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.100 4.100 18 H 0.096 0.904 19 C -0.155 4.155 20 C -0.144 4.144 21 C -0.009 4.009 22 H 0.151 0.849 23 C 0.297 3.703 24 O -0.403 6.403 25 O -0.334 6.334 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 13.230 -9.065 0.802 16.058 hybrid contribution 1.014 1.872 1.142 2.416 sum 14.244 -7.193 1.943 16.075 Atomic orbital electron populations 1.69888 1.06062 1.26830 1.51078 1.24843 0.94674 0.98764 0.94758 0.86959 0.80711 0.84153 0.78736 1.20052 1.21237 1.18870 1.21077 0.88831 0.94672 1.50663 0.90145 1.20524 0.96597 0.84172 0.97055 1.62383 1.11815 1.19899 1.27059 1.21975 0.89485 0.94603 0.98313 0.91204 1.21638 0.94708 1.00936 0.97814 1.21528 0.96575 0.96268 1.01148 1.21515 0.99988 0.95977 0.97928 1.21550 0.95928 0.99653 0.97765 1.21229 0.94945 0.95898 0.97894 0.90385 1.21683 0.96080 1.00109 0.97664 1.21617 0.96158 0.93716 1.02938 1.21767 1.01640 0.93912 0.83598 0.84945 1.25742 0.79251 0.81489 0.83792 1.90588 1.37482 1.27932 1.84260 1.84652 1.68652 1.61341 1.18742 0.92688 0.96761 0.94811 0.91350 0.91412 0.92248 0.92413 0.91959 0.92611 0.92255 0.92467 0.91699 0.92995 0.89628 0.90776 0.74816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 7 C -0.51 -14.47 8.98 -34.44 -0.31 -14.78 16 8 H 0.08 2.41 7.37 -52.49 -0.39 2.02 16 9 C 0.14 3.50 3.24 -4.97 -0.02 3.48 16 10 N -0.49 -10.10 4.44 -221.56 -0.98 -11.08 16 11 C 0.06 1.15 1.36 -67.75 -0.09 1.06 16 12 H 0.07 1.39 5.19 -51.92 -0.27 1.12 16 13 C -0.11 -1.92 4.83 -26.73 -0.13 -2.05 16 14 C -0.12 -1.60 5.92 -26.73 -0.16 -1.75 16 15 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 16 C -0.11 -1.36 5.22 -26.73 -0.14 -1.49 16 17 C -0.08 -1.16 2.14 -90.57 -0.19 -1.36 16 18 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.12 -1.57 5.05 -26.61 -0.13 -1.71 16 20 C -0.11 -1.54 5.55 -26.62 -0.15 -1.69 16 21 C 0.10 1.92 2.70 -68.84 -0.19 1.73 16 22 H 0.13 2.74 6.71 -51.93 -0.35 2.39 16 23 C 0.46 8.49 5.82 36.00 0.21 8.70 16 24 O -0.51 -10.93 12.39 -18.75 -0.23 -11.16 16 25 O -0.52 -7.87 13.29 -39.26 -0.52 -8.39 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.01 0.39 4.81 -51.93 -0.25 0.14 16 28 H 0.03 0.84 5.10 -51.93 -0.26 0.58 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.28 6.12 -51.93 -0.32 0.96 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.73 7.32 -51.93 -0.38 0.35 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.39 4.23 9.10 45.56 0.41 4.65 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -31.98 304.03 -8.22 -40.20 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.62 Total: 4.61 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.55 Total: -9.42 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.21 Total: -37.80 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.75 Total: -19.55 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.98 -8.22 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250857554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.649 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds