Wall clock time and date at job start Mon Mar 30 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99902 * 2 1 4 4 H 1.48501 * 109.46952 * 269.99631 * 3 2 1 5 5 H 1.48499 * 109.46931 * 29.99472 * 3 2 1 6 6 H 1.48501 * 109.47094 * 149.99499 * 3 2 1 7 7 C 1.37875 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99694 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00353 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46942 * 179.97438 * 9 7 2 11 11 C 1.46809 * 110.99634 * 169.99753 * 10 9 7 12 12 H 1.09007 * 109.35449 * 65.97969 * 11 10 9 13 13 C 1.52975 * 109.70555 * 305.94636 * 11 10 9 14 14 C 1.53019 * 109.40430 * 179.72142 * 13 11 10 15 15 C 1.52984 * 109.54036 * 59.92333 * 14 13 11 16 16 C 1.53027 * 109.53312 * 300.15624 * 15 14 13 17 17 C 1.52971 * 109.38926 * 59.93952 * 16 15 14 18 18 H 1.08999 * 109.50390 * 59.82501 * 17 16 15 19 19 C 1.53079 * 109.59721 * 180.02562 * 17 16 15 20 20 C 1.53149 * 109.09433 * 177.62650 * 19 17 16 21 21 C 1.46870 * 111.00282 * 294.12464 * 10 9 7 22 22 H 1.09000 * 109.44960 * 54.25209 * 21 10 9 23 23 C 1.50696 * 109.43395 * 294.31161 * 21 10 9 24 24 O 1.20830 * 120.00214 * 0.63345 * 23 21 10 25 25 O 1.34231 * 120.00214 * 180.62870 * 23 21 10 26 26 H 0.96992 * 119.99992 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.46905 * 59.99827 * 9 7 2 28 28 H 1.09000 * 109.46944 * 300.00461 * 9 7 2 29 29 H 1.09006 * 109.47703 * 299.69619 * 13 11 10 30 30 H 1.08995 * 109.48233 * 59.73824 * 13 11 10 31 31 H 1.08997 * 109.45952 * 179.97438 * 14 13 11 32 32 H 1.09005 * 109.45848 * 299.91694 * 14 13 11 33 33 H 1.08997 * 109.46502 * 60.17966 * 15 14 13 34 34 H 1.09000 * 109.46102 * 180.14297 * 15 14 13 35 35 H 1.08998 * 109.48726 * 179.91314 * 16 15 14 36 36 H 1.08998 * 109.48750 * 299.94968 * 16 15 14 37 37 H 1.08998 * 109.53482 * 297.51004 * 19 17 16 38 38 H 1.08991 * 109.53654 * 57.74233 * 19 17 16 39 39 H 1.09000 * 109.49740 * 62.36280 * 20 19 17 40 40 H 1.09005 * 109.49070 * 182.44678 * 20 19 17 41 41 H 0.96698 * 117.00283 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 7 4.0013 -2.5790 0.0022 11 6 5.4493 -2.6252 -0.2352 12 1 5.9681 -2.1638 0.6051 13 6 5.7858 -1.8661 -1.5201 14 6 7.2968 -1.9127 -1.7572 15 6 7.7493 -3.3681 -1.8894 16 6 7.4092 -4.1284 -0.6057 17 6 5.8980 -4.0819 -0.3732 18 1 5.3855 -4.5418 -1.2181 19 6 5.5524 -4.8407 0.9106 20 6 4.0456 -4.7367 1.1638 21 6 3.6479 -3.2612 1.2539 22 1 2.5731 -3.1845 1.4182 23 6 4.3785 -2.6133 2.4017 24 8 5.1085 -1.6721 2.1989 25 8 4.2182 -3.0817 3.6494 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8753 -0.6803 -0.8888 29 1 5.2713 -2.3301 -2.3616 30 1 5.4646 -0.8290 -1.4243 31 1 7.5375 -1.3725 -2.6727 32 1 7.8109 -1.4478 -0.9159 33 1 7.2380 -3.8323 -2.7327 34 1 8.8261 -3.3999 -2.0557 35 1 7.7305 -5.1655 -0.7013 36 1 7.9214 -3.6653 0.2377 37 1 5.8321 -5.8885 0.8011 38 1 6.0939 -4.4035 1.7493 39 1 3.5053 -5.2095 0.3437 40 1 3.7986 -5.2381 2.0997 41 1 4.7078 -2.6338 4.3528 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250857554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:49 Heat of formation + Delta-G solvation = -121.299401 kcal Electronic energy + Delta-G solvation = -22473.480505 eV Core-core repulsion = 19351.516888 eV Total energy + Delta-G solvation = -3121.963616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25986 -39.99622 -37.43173 -36.70522 -35.48114 -34.23137 -31.41474 -30.91228 -29.28707 -26.33823 -24.37744 -24.15827 -22.98060 -21.73779 -20.81372 -20.57856 -19.09848 -18.88502 -17.20684 -17.18440 -16.48411 -16.36776 -15.85967 -15.69980 -15.22670 -14.99509 -14.61425 -14.39023 -14.17348 -13.91797 -13.84517 -13.40437 -12.90939 -12.81749 -12.62443 -12.57148 -12.49021 -12.38076 -11.96287 -11.92428 -11.86888 -11.76628 -11.52867 -11.40878 -11.22932 -10.82309 -10.78519 -10.59083 -9.05333 -8.32658 -6.33161 1.20725 1.25907 1.28203 1.40108 2.20475 2.28793 2.96713 3.03855 3.69562 3.80743 3.89033 3.99476 4.18902 4.26808 4.33484 4.38549 4.48619 4.55719 4.60198 4.65439 4.79507 4.83504 4.88996 4.98724 5.02506 5.07794 5.11588 5.12112 5.21757 5.27586 5.32866 5.34769 5.41213 5.45051 5.51909 5.61171 5.72355 5.95481 6.24993 6.57870 6.71563 7.01544 7.29690 8.83171 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.008383 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.836659 B = 3339.482304 C = 4123.868310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.018 3.982 3 Si 0.929 3.071 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.050 0.950 9 C 0.158 3.842 10 N -0.499 5.499 11 C 0.063 3.937 12 H 0.051 0.949 13 C -0.115 4.115 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.106 4.106 17 C -0.078 4.078 18 H 0.077 0.923 19 C -0.113 4.113 20 C -0.099 4.099 21 C 0.093 3.907 22 H 0.104 0.896 23 C 0.460 3.540 24 O -0.544 6.544 25 O -0.511 6.511 26 H 0.267 0.733 27 H -0.004 1.004 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.078 -10.344 1.534 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.180 4.180 3 Si 0.754 3.246 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.031 3.969 10 N -0.221 5.221 11 C -0.044 4.044 12 H 0.069 0.931 13 C -0.153 4.153 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.144 4.144 17 C -0.097 4.097 18 H 0.095 0.905 19 C -0.150 4.150 20 C -0.137 4.137 21 C -0.018 4.018 22 H 0.121 0.879 23 C 0.302 3.698 24 O -0.435 6.435 25 O -0.323 6.323 26 H 0.076 0.924 27 H 0.014 0.986 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 15.672 -10.420 0.789 18.836 hybrid contribution 0.202 2.220 1.229 2.545 sum 15.873 -8.201 2.017 17.980 Atomic orbital electron populations 1.70008 1.07565 1.27907 1.52620 1.25619 0.95440 1.02289 0.94664 0.85972 0.79147 0.80113 0.79366 1.18653 1.20354 1.19176 1.21301 0.90774 0.93524 1.49632 0.93191 1.20158 0.94098 0.86819 0.95822 1.62313 1.14000 1.17193 1.28635 1.22082 0.87178 0.97385 0.97774 0.93095 1.21646 0.97389 0.98914 0.97359 1.21504 0.93683 0.98317 1.01543 1.21515 1.01486 0.94094 0.97945 1.21541 0.93731 1.01384 0.97746 1.21239 0.96758 0.93116 0.98538 0.90453 1.21686 0.94647 1.01908 0.96766 1.21641 0.97409 0.90359 1.04256 1.21804 1.00090 0.96577 0.83325 0.87867 1.25530 0.78620 0.80855 0.84761 1.90585 1.38893 1.29086 1.84927 1.84569 1.68595 1.61024 1.18128 0.92407 0.98632 0.95211 0.91768 0.94370 0.90928 0.92960 0.91402 0.90227 0.89474 0.92933 0.88260 0.93508 0.89261 0.88723 0.72262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 2 C 0.02 1.07 5.47 84.65 0.46 1.53 16 3 Si 0.93 46.49 27.47 68.60 1.88 48.38 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -13.39 6.54 99.48 0.65 -12.74 16 7 C -0.51 -30.09 8.98 25.60 0.23 -29.86 16 8 H 0.05 3.16 7.37 -2.91 -0.02 3.13 16 9 C 0.16 8.03 3.24 85.56 0.28 8.31 16 10 N -0.50 -21.03 4.44 -854.90 -3.80 -24.83 16 11 C 0.06 2.25 1.36 44.94 0.06 2.31 16 12 H 0.05 2.04 5.19 -2.38 -0.01 2.02 16 13 C -0.12 -3.91 4.83 30.59 0.15 -3.76 16 14 C -0.11 -2.88 5.92 30.60 0.18 -2.70 16 15 C -0.11 -2.29 5.92 30.60 0.18 -2.11 16 16 C -0.11 -2.22 5.22 30.59 0.16 -2.06 16 17 C -0.08 -2.06 2.14 -10.76 -0.02 -2.09 16 18 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 19 C -0.11 -2.68 5.05 30.67 0.15 -2.52 16 20 C -0.10 -2.71 5.55 30.67 0.17 -2.54 16 21 C 0.09 3.54 2.70 44.20 0.12 3.66 16 22 H 0.10 4.48 6.71 -2.39 -0.02 4.47 16 23 C 0.46 17.06 5.82 71.23 0.41 17.48 16 24 O -0.54 -23.32 12.39 21.95 0.27 -23.04 16 25 O -0.51 -14.66 13.29 -51.43 -0.68 -15.35 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.00 -0.22 4.81 -2.39 -0.01 -0.23 16 28 H 0.03 1.54 5.10 -2.39 -0.01 1.52 16 29 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.04 1.48 6.12 -2.39 -0.01 1.47 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.18 7.32 -2.39 -0.02 1.16 16 39 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.09 2.20 8.08 -2.38 -0.02 2.18 16 41 H 0.42 8.16 9.10 -74.06 -0.67 7.49 16 Total: -1.00 -71.43 304.03 0.81 -70.61 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.30 Total: 17.32 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 2.54 Total: -14.34 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -3.50 Total: -83.57 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.41 Total: -38.39 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.88 Total: 48.38 kcal Total: -71.43 0.81 -70.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250857554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.685 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds