Wall clock time and date at job start Mon Mar 30 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00362 * 2 1 4 4 H 1.48504 * 109.47265 * 269.99913 * 3 2 1 5 5 H 1.48506 * 109.47019 * 29.99568 * 3 2 1 6 6 H 1.48491 * 109.47627 * 149.99804 * 3 2 1 7 7 C 1.37881 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00132 * 0.27770 * 7 2 1 10 10 N 1.46899 * 109.47183 * 174.51954 * 9 7 2 11 11 C 1.46900 * 110.99814 * 302.59959 * 10 9 7 12 12 H 1.08996 * 109.48859 * 54.09215 * 11 10 9 13 13 C 1.53010 * 109.38612 * 294.05003 * 11 10 9 14 14 C 1.52991 * 109.51533 * 180.27020 * 13 11 10 15 15 C 1.53008 * 109.42565 * 60.12912 * 14 13 11 16 16 C 1.52996 * 109.42652 * 299.86435 * 15 14 13 17 17 C 1.52916 * 109.56958 * 59.94237 * 16 15 14 18 18 H 1.08994 * 109.40143 * 180.25357 * 17 16 15 19 19 C 1.53086 * 109.58066 * 60.25139 * 17 16 15 20 20 C 1.53127 * 109.12151 * 182.07927 * 19 17 16 21 21 C 1.46851 * 111.00164 * 178.45462 * 10 9 7 22 22 H 1.09007 * 109.45495 * 65.79984 * 21 10 9 23 23 C 1.50702 * 109.45266 * 305.86381 * 21 10 9 24 24 O 1.20828 * 120.00214 * 329.81655 * 23 21 10 25 25 O 1.34231 * 120.00145 * 149.82613 * 23 21 10 26 26 H 0.97002 * 120.00023 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.47285 * 294.52048 * 9 7 2 28 28 H 1.08995 * 109.47132 * 54.51391 * 9 7 2 29 29 H 1.08999 * 109.46186 * 300.28122 * 13 11 10 30 30 H 1.08996 * 109.45971 * 60.25251 * 13 11 10 31 31 H 1.09001 * 109.47965 * 300.14078 * 14 13 11 32 32 H 1.09004 * 109.47717 * 180.11380 * 14 13 11 33 33 H 1.08991 * 109.48060 * 179.87990 * 15 14 13 34 34 H 1.08999 * 109.48520 * 59.84804 * 15 14 13 35 35 H 1.08998 * 109.45351 * 299.90929 * 16 15 14 36 36 H 1.08998 * 109.45221 * 179.97438 * 16 15 14 37 37 H 1.08997 * 109.52488 * 301.97303 * 19 17 16 38 38 H 1.08993 * 109.52546 * 62.18500 * 19 17 16 39 39 H 1.09003 * 109.50220 * 177.51431 * 20 19 17 40 40 H 1.08995 * 109.50842 * 297.62720 * 20 19 17 41 41 H 0.96699 * 117.00092 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0052 10 7 2.2006 -3.6123 -0.1357 11 6 3.0109 -3.4730 -1.3531 12 1 3.4891 -2.4936 -1.3615 13 6 2.1099 -3.6131 -2.5817 14 6 2.9520 -3.4752 -3.8515 15 6 4.0184 -4.5722 -3.8766 16 6 4.9217 -4.4319 -2.6498 17 6 4.0829 -4.5647 -1.3781 18 1 4.7282 -4.4598 -0.5061 19 6 3.4073 -5.9381 -1.3503 20 6 2.5296 -6.0401 -0.0997 21 6 1.5037 -4.9046 -0.1081 22 1 0.8701 -4.9943 -0.9906 23 6 0.6514 -4.9888 1.1318 24 8 0.9876 -4.4082 2.1367 25 8 -0.4813 -5.7091 1.1201 26 1 -0.4850 0.8401 -0.0004 27 1 0.6960 -2.6024 0.9273 28 1 0.5562 -2.5139 -0.8449 29 1 1.6287 -4.5911 -2.5695 30 1 1.3484 -2.8335 -2.5644 31 1 3.4352 -2.4982 -3.8629 32 1 2.3092 -3.5731 -4.7264 33 1 4.6176 -4.4761 -4.7819 34 1 3.5354 -5.5492 -3.8623 35 1 5.4057 -3.4554 -2.6651 36 1 5.6813 -5.2134 -2.6669 37 1 2.7893 -6.0582 -2.2400 38 1 4.1684 -6.7180 -1.3259 39 1 2.0111 -6.9989 -0.0962 40 1 3.1536 -5.9601 0.7904 41 1 -0.9945 -5.7336 1.9393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250857556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:52 Heat of formation + Delta-G solvation = -102.120570 kcal Electronic energy + Delta-G solvation = -22309.582169 eV Core-core repulsion = 19188.450209 eV Total energy + Delta-G solvation = -3121.131960 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56014 -39.14833 -35.87778 -35.10939 -33.63820 -32.12360 -30.27382 -29.23309 -27.07725 -24.98718 -23.28587 -22.41425 -21.53748 -21.30921 -19.69069 -17.69870 -17.50888 -16.34543 -16.24300 -15.40805 -15.13194 -14.97394 -14.43299 -14.01055 -13.75984 -13.30686 -13.03311 -12.81875 -12.54857 -12.38241 -12.10627 -12.01750 -11.69825 -11.54267 -11.18048 -10.99239 -10.95894 -10.73471 -10.69959 -10.54158 -10.12748 -10.06330 -9.93967 -9.81328 -9.62441 -9.29999 -9.07534 -8.41403 -7.22094 -6.01294 -4.01489 2.75752 3.32285 3.38835 3.40670 3.43892 4.42384 4.74702 4.91704 5.01433 5.15444 5.22240 5.35042 5.37708 5.46863 5.58768 5.60169 5.69430 5.82292 5.88636 5.93915 5.94966 6.00768 6.06469 6.15177 6.23728 6.31239 6.33456 6.40388 6.49068 6.58951 6.70736 6.82165 6.93602 6.98144 7.32033 7.37760 7.77065 8.06901 8.13619 8.40700 8.56531 9.04377 9.61524 11.10071 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.009187 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.083146 B = 3047.137897 C = 4425.447238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.183 3.817 10 N -0.513 5.513 11 C 0.105 3.895 12 H 0.101 0.899 13 C -0.154 4.154 14 C -0.112 4.112 15 C -0.119 4.119 16 C -0.111 4.111 17 C -0.085 4.085 18 H 0.076 0.924 19 C -0.112 4.112 20 C -0.105 4.105 21 C 0.094 3.906 22 H 0.065 0.935 23 C 0.479 3.521 24 O -0.485 6.485 25 O -0.527 6.527 26 H 0.261 0.739 27 H 0.037 0.963 28 H -0.003 1.003 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.863 -12.583 -5.718 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.058 3.942 10 N -0.238 5.238 11 C -0.003 4.003 12 H 0.119 0.881 13 C -0.193 4.193 14 C -0.150 4.150 15 C -0.157 4.157 16 C -0.149 4.149 17 C -0.104 4.104 18 H 0.094 0.906 19 C -0.149 4.149 20 C -0.143 4.143 21 C -0.016 4.016 22 H 0.083 0.917 23 C 0.319 3.681 24 O -0.370 6.370 25 O -0.339 6.339 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.341 -12.255 -5.348 14.398 hybrid contribution -0.704 1.007 -0.055 1.230 sum 4.637 -11.248 -5.403 13.312 Atomic orbital electron populations 1.69958 1.06046 1.26693 1.51031 1.24961 0.94839 0.99226 0.95477 0.86525 0.79904 0.83229 0.77958 1.20761 1.21298 1.19732 1.21062 0.93342 0.89685 1.50016 0.91790 1.19927 0.90378 0.87321 0.96569 1.62208 1.25466 0.99737 1.36364 1.21598 0.92897 0.99369 0.86439 0.88114 1.22219 0.99747 1.01665 0.95631 1.21436 0.97181 0.98915 0.97504 1.21577 0.97409 0.99207 0.97478 1.21497 0.97410 1.01588 0.94393 1.21226 0.96929 0.94535 0.97692 0.90600 1.21665 0.98589 0.97362 0.97300 1.21533 0.96991 0.95730 1.00020 1.21147 0.93550 0.94759 0.92108 0.91746 1.23461 0.79022 0.74773 0.90826 1.90725 1.70535 1.41113 1.34593 1.84535 1.36449 1.68179 1.44702 0.92985 0.94522 0.98491 0.92639 0.90728 0.91880 0.92815 0.92743 0.92129 0.91842 0.92444 0.91474 0.91991 0.91569 0.90653 0.73928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -14.13 8.27 -34.44 -0.28 -14.41 16 8 H 0.06 1.78 6.74 -52.48 -0.35 1.42 16 9 C 0.18 4.80 4.03 -4.98 -0.02 4.78 16 10 N -0.51 -11.00 4.27 -221.53 -0.94 -11.95 16 11 C 0.11 1.95 1.98 -67.70 -0.13 1.82 16 12 H 0.10 2.12 6.23 -51.93 -0.32 1.80 16 13 C -0.15 -2.64 4.24 -26.73 -0.11 -2.75 16 14 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 15 C -0.12 -1.43 5.65 -26.73 -0.15 -1.58 16 16 C -0.11 -1.38 5.45 -26.78 -0.15 -1.53 16 17 C -0.08 -1.26 2.60 -90.61 -0.24 -1.49 16 18 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.11 -1.45 4.70 -26.62 -0.13 -1.58 16 20 C -0.10 -1.53 5.36 -26.65 -0.14 -1.67 16 21 C 0.09 1.73 2.04 -68.87 -0.14 1.59 16 22 H 0.06 1.16 6.17 -51.92 -0.32 0.84 16 23 C 0.48 9.26 6.37 36.01 0.23 9.49 16 24 O -0.49 -11.17 16.03 -18.75 -0.30 -11.47 16 25 O -0.53 -8.11 13.42 -39.26 -0.53 -8.64 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.04 1.08 5.98 -51.92 -0.31 0.77 16 28 H 0.00 -0.07 6.59 -51.93 -0.34 -0.41 16 29 H 0.06 0.89 4.78 -51.93 -0.25 0.64 16 30 H 0.07 1.53 6.61 -51.93 -0.34 1.19 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.69 6.41 -51.93 -0.33 0.36 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.85 4.85 -51.93 -0.25 0.60 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.40 4.42 9.10 45.56 0.41 4.83 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -32.31 304.97 -8.33 -40.64 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.35 Total: 3.75 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.52 Total: -7.58 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.21 Total: -38.13 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.83 Total: -20.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.31 -8.33 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250857556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.484 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds