Wall clock time and date at job start Mon Mar 30 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00362 * 2 1 4 4 H 1.48504 * 109.47265 * 269.99913 * 3 2 1 5 5 H 1.48506 * 109.47019 * 29.99568 * 3 2 1 6 6 H 1.48491 * 109.47627 * 149.99804 * 3 2 1 7 7 C 1.37881 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00132 * 0.27770 * 7 2 1 10 10 N 1.46899 * 109.47183 * 174.51954 * 9 7 2 11 11 C 1.46900 * 110.99814 * 302.59959 * 10 9 7 12 12 H 1.08996 * 109.48859 * 54.09215 * 11 10 9 13 13 C 1.53010 * 109.38612 * 294.05003 * 11 10 9 14 14 C 1.52991 * 109.51533 * 180.27020 * 13 11 10 15 15 C 1.53008 * 109.42565 * 60.12912 * 14 13 11 16 16 C 1.52996 * 109.42652 * 299.86435 * 15 14 13 17 17 C 1.52916 * 109.56958 * 59.94237 * 16 15 14 18 18 H 1.08994 * 109.40143 * 180.25357 * 17 16 15 19 19 C 1.53086 * 109.58066 * 60.25139 * 17 16 15 20 20 C 1.53127 * 109.12151 * 182.07927 * 19 17 16 21 21 C 1.46851 * 111.00164 * 178.45462 * 10 9 7 22 22 H 1.09007 * 109.45495 * 65.79984 * 21 10 9 23 23 C 1.50702 * 109.45266 * 305.86381 * 21 10 9 24 24 O 1.20828 * 120.00214 * 329.81655 * 23 21 10 25 25 O 1.34231 * 120.00145 * 149.82613 * 23 21 10 26 26 H 0.97002 * 120.00023 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.47285 * 294.52048 * 9 7 2 28 28 H 1.08995 * 109.47132 * 54.51391 * 9 7 2 29 29 H 1.08999 * 109.46186 * 300.28122 * 13 11 10 30 30 H 1.08996 * 109.45971 * 60.25251 * 13 11 10 31 31 H 1.09001 * 109.47965 * 300.14078 * 14 13 11 32 32 H 1.09004 * 109.47717 * 180.11380 * 14 13 11 33 33 H 1.08991 * 109.48060 * 179.87990 * 15 14 13 34 34 H 1.08999 * 109.48520 * 59.84804 * 15 14 13 35 35 H 1.08998 * 109.45351 * 299.90929 * 16 15 14 36 36 H 1.08998 * 109.45221 * 179.97438 * 16 15 14 37 37 H 1.08997 * 109.52488 * 301.97303 * 19 17 16 38 38 H 1.08993 * 109.52546 * 62.18500 * 19 17 16 39 39 H 1.09003 * 109.50220 * 177.51431 * 20 19 17 40 40 H 1.08995 * 109.50842 * 297.62720 * 20 19 17 41 41 H 0.96699 * 117.00092 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0052 10 7 2.2006 -3.6123 -0.1357 11 6 3.0109 -3.4730 -1.3531 12 1 3.4891 -2.4936 -1.3615 13 6 2.1099 -3.6131 -2.5817 14 6 2.9520 -3.4752 -3.8515 15 6 4.0184 -4.5722 -3.8766 16 6 4.9217 -4.4319 -2.6498 17 6 4.0829 -4.5647 -1.3781 18 1 4.7282 -4.4598 -0.5061 19 6 3.4073 -5.9381 -1.3503 20 6 2.5296 -6.0401 -0.0997 21 6 1.5037 -4.9046 -0.1081 22 1 0.8701 -4.9943 -0.9906 23 6 0.6514 -4.9888 1.1318 24 8 0.9876 -4.4082 2.1367 25 8 -0.4813 -5.7091 1.1201 26 1 -0.4850 0.8401 -0.0004 27 1 0.6960 -2.6024 0.9273 28 1 0.5562 -2.5139 -0.8449 29 1 1.6287 -4.5911 -2.5695 30 1 1.3484 -2.8335 -2.5644 31 1 3.4352 -2.4982 -3.8629 32 1 2.3092 -3.5731 -4.7264 33 1 4.6176 -4.4761 -4.7819 34 1 3.5354 -5.5492 -3.8623 35 1 5.4057 -3.4554 -2.6651 36 1 5.6813 -5.2134 -2.6669 37 1 2.7893 -6.0582 -2.2400 38 1 4.1684 -6.7180 -1.3259 39 1 2.0111 -6.9989 -0.0962 40 1 3.1536 -5.9601 0.7904 41 1 -0.9945 -5.7336 1.9393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250857556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:52 Heat of formation + Delta-G solvation = -124.832965 kcal Electronic energy + Delta-G solvation = -22310.567052 eV Core-core repulsion = 19188.450209 eV Total energy + Delta-G solvation = -3122.116843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00965 -40.56115 -37.29956 -36.61536 -35.28829 -33.93636 -31.59555 -30.56543 -28.90637 -26.57881 -24.90834 -23.72582 -22.94935 -22.68971 -21.09978 -19.18612 -18.88677 -18.35227 -17.75754 -16.82895 -16.71743 -16.57827 -15.99564 -15.47205 -14.96913 -14.78671 -14.50534 -14.28246 -14.07652 -13.76621 -13.66665 -13.41339 -13.17237 -12.88972 -12.78481 -12.64415 -12.55056 -12.24763 -12.14852 -12.04176 -11.83836 -11.53094 -11.39763 -11.20980 -10.94522 -10.82333 -10.66462 -10.58702 -8.94193 -8.23374 -6.31662 1.21775 1.35537 1.37934 1.49210 2.03970 2.36849 3.10166 3.18447 3.72582 3.86293 3.97645 3.99820 4.15173 4.29869 4.31765 4.35842 4.48747 4.57925 4.67752 4.72094 4.82714 4.86924 4.92383 4.93294 5.09321 5.13613 5.17260 5.18678 5.29817 5.32971 5.40008 5.42966 5.51919 5.58739 5.60917 5.66259 5.74225 6.02300 6.29595 6.55960 6.83454 7.05142 7.36549 8.88525 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.009187 C = 0.006326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.083146 B = 3047.137897 C = 4425.447238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.205 3.795 10 N -0.526 5.526 11 C 0.103 3.897 12 H 0.064 0.936 13 C -0.145 4.145 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.107 4.107 17 C -0.080 4.080 18 H 0.064 0.936 19 C -0.105 4.105 20 C -0.099 4.099 21 C 0.088 3.912 22 H 0.069 0.931 23 C 0.480 3.520 24 O -0.532 6.532 25 O -0.512 6.512 26 H 0.263 0.737 27 H -0.002 1.002 28 H -0.030 1.030 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 -14.559 -7.320 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.251 5.251 11 C -0.005 4.005 12 H 0.082 0.918 13 C -0.184 4.184 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.099 4.099 18 H 0.082 0.918 19 C -0.142 4.142 20 C -0.136 4.136 21 C -0.022 4.022 22 H 0.086 0.914 23 C 0.322 3.678 24 O -0.420 6.420 25 O -0.326 6.326 26 H 0.072 0.928 27 H 0.016 0.984 28 H -0.012 1.012 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 7.092 -14.268 -6.965 17.389 hybrid contribution -1.342 1.580 0.478 2.127 sum 5.749 -12.688 -6.487 15.366 Atomic orbital electron populations 1.70092 1.07703 1.27725 1.51976 1.25888 0.95737 1.03108 0.94906 0.85430 0.78550 0.78396 0.78581 1.19360 1.20820 1.19088 1.21363 0.93345 0.90989 1.49765 0.92115 1.19425 0.90397 0.88982 0.93338 1.62068 1.24671 0.99815 1.38527 1.21628 0.93618 0.99463 0.85780 0.91808 1.22092 0.98850 1.00609 0.96822 1.21440 0.97771 0.99573 0.96076 1.21557 0.96588 0.98615 0.98143 1.21496 0.97636 1.02270 0.93063 1.21196 0.95678 0.94198 0.98858 0.91777 1.21689 0.99122 0.96774 0.96626 1.21596 0.96215 0.95149 1.00681 1.21389 0.94729 0.94387 0.91657 0.91360 1.23761 0.79550 0.74010 0.90513 1.90704 1.71911 1.43170 1.36252 1.84476 1.35221 1.66817 1.46066 0.92814 0.98415 1.01197 0.91155 0.95510 0.93326 0.91512 0.90428 0.90452 0.92840 0.89341 0.90362 0.88397 0.88432 0.91667 0.71564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 46.02 29.54 68.60 2.03 48.04 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.52 -30.55 8.27 25.60 0.21 -30.33 16 8 H 0.06 3.54 6.74 -2.91 -0.02 3.52 16 9 C 0.20 11.45 4.03 85.56 0.34 11.80 16 10 N -0.53 -23.47 4.27 -854.79 -3.65 -27.12 16 11 C 0.10 3.89 1.98 44.92 0.09 3.98 16 12 H 0.06 2.84 6.23 -2.39 -0.01 2.83 16 13 C -0.14 -5.04 4.24 30.59 0.13 -4.91 16 14 C -0.11 -3.00 5.92 30.59 0.18 -2.82 16 15 C -0.11 -2.24 5.65 30.60 0.17 -2.07 16 16 C -0.11 -2.30 5.45 30.56 0.17 -2.14 16 17 C -0.08 -2.23 2.60 -10.79 -0.03 -2.25 16 18 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 19 C -0.11 -2.32 4.70 30.67 0.14 -2.17 16 20 C -0.10 -2.64 5.36 30.65 0.16 -2.48 16 21 C 0.09 3.23 2.04 44.19 0.09 3.32 16 22 H 0.07 2.45 6.17 -2.38 -0.01 2.43 16 23 C 0.48 18.85 6.37 71.24 0.45 19.31 16 24 O -0.53 -25.51 16.03 21.96 0.35 -25.16 16 25 O -0.51 -15.47 13.42 -51.42 -0.69 -16.16 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.00 -0.14 5.98 -2.38 -0.01 -0.15 16 28 H -0.03 -1.77 6.59 -2.39 -0.02 -1.78 16 29 H 0.07 2.19 4.78 -2.39 -0.01 2.18 16 30 H 0.03 1.16 6.61 -2.39 -0.02 1.14 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.35 6.41 -2.39 -0.02 1.33 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.60 4.85 -2.39 -0.01 1.59 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.42 8.98 9.10 -74.06 -0.67 8.30 16 Total: -1.00 -75.09 304.97 1.28 -73.81 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.37 Total: 14.87 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 2.58 Total: -10.22 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.36 Total: -85.19 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.34 Total: -41.32 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -75.09 1.28 -73.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250857556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.022 kcal (2) G-P(sol) polarization free energy of solvation -75.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds