Wall clock time and date at job start Mon Mar 30 2020 06:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47345 * 2 1 4 4 C 1.53009 * 109.47420 * 239.99776 * 2 1 3 5 5 O 1.45201 * 109.47392 * 119.99998 * 2 1 3 6 6 C 1.34638 * 116.99978 * 59.99685 * 5 2 1 7 7 O 1.21511 * 120.00043 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99950 * 180.02562 * 6 5 2 9 9 C 1.45535 * 118.83079 * 8.72972 * 8 6 5 10 10 C 1.52609 * 110.78798 * 140.49873 * 9 8 6 11 11 H 1.08996 * 115.45520 * 223.16707 * 10 9 8 12 12 C 1.53813 * 115.69647 * 81.67482 * 10 9 8 13 13 C 1.51975 * 120.26996 * 13.28492 * 10 9 8 14 14 H 1.09000 * 115.35531 * 209.09034 * 13 10 9 15 15 C 1.51278 * 120.67216 * 353.31582 * 13 10 9 16 16 C 1.45317 * 118.82983 * 188.74743 * 8 6 5 17 17 H 1.09004 * 108.97606 * 115.22221 * 16 8 6 18 18 C 1.50698 * 108.97363 * 356.44276 * 16 8 6 19 19 H 1.08004 * 119.99909 * 247.64286 * 18 16 8 20 20 C 1.37882 * 120.00027 * 67.64895 * 18 16 8 21 21 N 1.31511 * 119.99786 * 10.04031 * 20 18 16 22 22 Si 1.86802 * 119.99966 * 190.04083 * 20 18 16 23 23 H 1.48504 * 109.46998 * 89.99538 * 22 20 18 24 24 H 1.48495 * 109.47082 * 209.99935 * 22 20 18 25 25 H 1.48504 * 109.47077 * 329.99849 * 22 20 18 26 26 H 1.08999 * 109.46942 * 300.00059 * 1 2 3 27 27 H 1.09004 * 109.46822 * 60.00078 * 1 2 3 28 28 H 1.08999 * 109.46689 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47257 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46636 * 300.00014 * 3 2 1 31 31 H 1.08999 * 109.46666 * 59.99847 * 3 2 1 32 32 H 1.08994 * 109.47069 * 300.00177 * 4 2 1 33 33 H 1.08997 * 109.46665 * 60.00293 * 4 2 1 34 34 H 1.08992 * 109.47126 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.21526 * 260.83687 * 9 8 6 36 36 H 1.09001 * 109.21355 * 20.21409 * 9 8 6 37 37 H 1.09006 * 117.53910 * 355.86975 * 12 10 9 38 38 H 1.08998 * 117.54211 * 141.12752 * 12 10 9 39 39 H 1.09003 * 108.78414 * 259.86070 * 15 13 10 40 40 H 1.09000 * 108.78484 * 141.65536 * 15 13 10 41 41 H 0.97007 * 119.99324 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 2.7404 -1.9527 3.4928 10 6 2.2978 -2.4827 4.8538 11 1 2.0967 -1.7233 5.6094 12 6 3.0001 -3.7654 5.3305 13 6 1.5267 -3.7885 4.9535 14 1 0.8434 -3.8637 5.7994 15 6 1.0560 -4.5039 3.7064 16 6 1.8271 -4.0978 2.4648 17 1 2.7848 -4.6182 2.4562 18 6 1.0388 -4.5031 1.2460 19 1 0.0208 -4.8484 1.3516 20 6 1.6170 -4.4334 -0.0037 21 7 2.9071 -4.2055 -0.1195 22 14 0.5681 -4.6626 -1.5323 23 1 0.0434 -3.3456 -1.9746 24 1 1.3938 -5.2554 -2.6149 25 1 -0.5668 -5.5689 -1.2226 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 -1.7489 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 3.8176 -2.0828 3.3903 36 1 2.4993 -0.8918 3.4261 37 1 3.7032 -4.2394 4.6455 38 1 3.2508 -3.8392 6.3887 39 1 0.0000 -4.2823 3.5521 40 1 1.1690 -5.5779 3.8542 41 1 3.3138 -4.1561 -0.9988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:25 Heat of formation + Delta-G solvation = -18.582536 kcal Electronic energy + Delta-G solvation = -22847.872151 eV Core-core repulsion = 19730.362672 eV Total energy + Delta-G solvation = -3117.509479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80552 -38.40155 -36.06459 -33.53170 -33.16515 -31.88835 -30.51130 -26.89594 -26.71173 -25.73064 -25.47296 -22.64160 -21.11833 -20.75171 -18.96299 -17.51928 -16.85693 -15.93327 -15.48970 -15.10511 -14.79715 -14.30142 -14.17921 -13.77694 -13.46232 -13.07637 -12.93525 -12.68129 -12.20729 -12.01158 -11.60233 -11.55443 -11.33867 -11.23347 -11.07472 -11.00735 -10.79208 -10.68667 -10.50799 -10.45776 -10.31868 -9.69223 -9.46732 -9.33299 -9.17905 -9.01756 -8.93654 -7.35972 -6.92973 -5.90838 -3.62401 3.47330 3.49987 3.53717 3.64171 4.19474 4.43870 4.70205 5.02086 5.21729 5.33730 5.37464 5.38376 5.46646 5.57146 5.64091 5.87045 5.90070 5.94299 6.03561 6.15946 6.18797 6.21486 6.23170 6.33833 6.42485 6.47236 6.52584 6.57346 6.58767 6.61120 6.83657 6.96045 6.97915 7.15036 7.56587 7.64876 8.01545 8.17371 8.31747 9.01661 9.11960 9.78012 10.12793 11.17373 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.011006 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.141373 B = 2543.375921 C = 3760.421376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.141 3.859 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.399 6.399 6 C 0.644 3.356 7 O -0.509 6.509 8 N -0.571 5.571 9 C 0.145 3.855 10 C -0.163 4.163 11 H 0.100 0.900 12 C -0.187 4.187 13 C -0.125 4.125 14 H 0.085 0.915 15 C -0.091 4.091 16 C 0.273 3.727 17 H 0.042 0.958 18 C -0.490 4.490 19 H 0.057 0.943 20 C 0.133 3.867 21 N -0.890 5.890 22 Si 0.902 3.098 23 H -0.275 1.275 24 H -0.301 1.301 25 H -0.283 1.283 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 7.114 5.088 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.103 3.897 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.317 6.317 6 C 0.399 3.601 7 O -0.395 6.395 8 N -0.311 5.311 9 C 0.020 3.980 10 C -0.182 4.182 11 H 0.118 0.882 12 C -0.224 4.224 13 C -0.144 4.144 14 H 0.103 0.897 15 C -0.129 4.129 16 C 0.175 3.825 17 H 0.060 0.940 18 C -0.527 4.527 19 H 0.075 0.925 20 C -0.071 4.071 21 N -0.530 5.530 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.228 1.228 25 H -0.209 1.209 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.632 6.969 4.704 8.432 hybrid contribution -0.331 0.168 -0.847 0.925 sum -0.964 7.137 3.857 8.169 Atomic orbital electron populations 1.22463 0.95260 1.05110 1.00726 1.21549 0.93420 0.90736 0.83962 1.21813 1.01678 0.94073 1.01793 1.22504 1.01098 1.04322 0.95756 1.86322 1.73343 1.27574 1.44472 1.18810 0.79704 0.78784 0.82764 1.90931 1.39613 1.64334 1.44581 1.47408 1.60097 1.08305 1.15261 1.20468 0.96058 0.96031 0.85434 1.22475 1.05738 0.91324 0.98638 0.88226 1.23090 0.96373 1.02240 1.00674 1.21598 0.93771 0.99101 0.99911 0.89715 1.20871 1.00697 0.98613 0.92761 1.18244 0.96026 0.75678 0.92529 0.94017 1.20796 0.98944 1.42686 0.90226 0.92518 1.24673 0.93937 0.89808 0.98716 1.70002 1.09922 1.49566 1.23518 0.86573 0.80266 0.77615 0.82416 1.20065 1.22835 1.20899 0.93069 0.92732 0.88973 0.92137 0.91417 0.92270 0.88492 0.93143 0.92856 0.93395 0.91012 0.88627 0.89678 0.92222 0.91814 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.37 37.16 0.31 -2.94 16 2 C 0.14 2.68 1.13 -90.61 -0.10 2.58 16 3 C -0.14 -2.01 8.85 37.16 0.33 -1.68 16 4 C -0.18 -3.62 8.37 37.16 0.31 -3.31 16 5 O -0.40 -8.79 8.53 -40.32 -0.34 -9.14 16 6 C 0.64 15.81 6.71 54.05 0.36 16.18 16 7 O -0.51 -13.37 4.87 -19.28 -0.09 -13.47 16 8 N -0.57 -13.37 3.01 -175.85 -0.53 -13.90 16 9 C 0.14 2.81 6.17 -4.76 -0.03 2.78 16 10 C -0.16 -2.71 6.34 -90.92 -0.58 -3.28 16 11 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 12 C -0.19 -2.93 9.78 -26.76 -0.26 -3.19 16 13 C -0.13 -2.14 5.91 -92.46 -0.55 -2.69 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.09 -1.85 5.42 -28.26 -0.15 -2.01 16 16 C 0.27 6.65 2.46 -70.38 -0.17 6.47 16 17 H 0.04 1.13 7.98 -51.93 -0.41 0.71 16 18 C -0.49 -13.35 6.43 -34.44 -0.22 -13.57 16 19 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 20 C 0.13 3.70 3.01 -17.82 -0.05 3.65 16 21 N -0.89 -25.49 12.45 55.41 0.69 -24.80 16 22 Si 0.90 23.00 27.45 -169.99 -4.67 18.33 16 23 H -0.27 -7.07 7.09 56.52 0.40 -6.67 16 24 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 25 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 2.00 5.88 -51.93 -0.31 1.69 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.35 5.09 -51.93 -0.26 2.08 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 36 H 0.07 1.33 7.08 -51.93 -0.37 0.97 16 37 H 0.10 1.64 8.12 -51.93 -0.42 1.22 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.25 7.84 -51.93 -0.41 0.85 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -29.41 312.19 -7.83 -37.24 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.79 Total: 2.03 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.80 Total: -1.01 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.16 Total: -38.70 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.44 Total: -22.60 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.67 Total: 18.33 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.41 -7.83 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.661 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds