Wall clock time and date at job start Mon Mar 30 2020 06:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47345 * 2 1 4 4 C 1.53009 * 109.47420 * 239.99776 * 2 1 3 5 5 O 1.45201 * 109.47392 * 119.99998 * 2 1 3 6 6 C 1.34638 * 116.99978 * 59.99685 * 5 2 1 7 7 O 1.21511 * 120.00043 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99950 * 180.02562 * 6 5 2 9 9 C 1.45535 * 118.83079 * 8.72972 * 8 6 5 10 10 C 1.52609 * 110.78798 * 140.49873 * 9 8 6 11 11 H 1.08996 * 115.45520 * 223.16707 * 10 9 8 12 12 C 1.53813 * 115.69647 * 81.67482 * 10 9 8 13 13 C 1.51975 * 120.26996 * 13.28492 * 10 9 8 14 14 H 1.09000 * 115.35531 * 209.09034 * 13 10 9 15 15 C 1.51278 * 120.67216 * 353.31582 * 13 10 9 16 16 C 1.45317 * 118.82983 * 188.74743 * 8 6 5 17 17 H 1.09004 * 108.97606 * 115.22221 * 16 8 6 18 18 C 1.50698 * 108.97363 * 356.44276 * 16 8 6 19 19 H 1.08004 * 119.99909 * 247.64286 * 18 16 8 20 20 C 1.37882 * 120.00027 * 67.64895 * 18 16 8 21 21 N 1.31511 * 119.99786 * 10.04031 * 20 18 16 22 22 Si 1.86802 * 119.99966 * 190.04083 * 20 18 16 23 23 H 1.48504 * 109.46998 * 89.99538 * 22 20 18 24 24 H 1.48495 * 109.47082 * 209.99935 * 22 20 18 25 25 H 1.48504 * 109.47077 * 329.99849 * 22 20 18 26 26 H 1.08999 * 109.46942 * 300.00059 * 1 2 3 27 27 H 1.09004 * 109.46822 * 60.00078 * 1 2 3 28 28 H 1.08999 * 109.46689 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47257 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46636 * 300.00014 * 3 2 1 31 31 H 1.08999 * 109.46666 * 59.99847 * 3 2 1 32 32 H 1.08994 * 109.47069 * 300.00177 * 4 2 1 33 33 H 1.08997 * 109.46665 * 60.00293 * 4 2 1 34 34 H 1.08992 * 109.47126 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.21526 * 260.83687 * 9 8 6 36 36 H 1.09001 * 109.21355 * 20.21409 * 9 8 6 37 37 H 1.09006 * 117.53910 * 355.86975 * 12 10 9 38 38 H 1.08998 * 117.54211 * 141.12752 * 12 10 9 39 39 H 1.09003 * 108.78414 * 259.86070 * 15 13 10 40 40 H 1.09000 * 108.78484 * 141.65536 * 15 13 10 41 41 H 0.97007 * 119.99324 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 2.7404 -1.9527 3.4928 10 6 2.2978 -2.4827 4.8538 11 1 2.0967 -1.7233 5.6094 12 6 3.0001 -3.7654 5.3305 13 6 1.5267 -3.7885 4.9535 14 1 0.8434 -3.8637 5.7994 15 6 1.0560 -4.5039 3.7064 16 6 1.8271 -4.0978 2.4648 17 1 2.7848 -4.6182 2.4562 18 6 1.0388 -4.5031 1.2460 19 1 0.0208 -4.8484 1.3516 20 6 1.6170 -4.4334 -0.0037 21 7 2.9071 -4.2055 -0.1195 22 14 0.5681 -4.6626 -1.5323 23 1 0.0434 -3.3456 -1.9746 24 1 1.3938 -5.2554 -2.6149 25 1 -0.5668 -5.5689 -1.2226 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 -1.7489 -1.2492 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 3.8176 -2.0828 3.3903 36 1 2.4993 -0.8918 3.4261 37 1 3.7032 -4.2394 4.6455 38 1 3.2508 -3.8392 6.3887 39 1 0.0000 -4.2823 3.5521 40 1 1.1690 -5.5779 3.8542 41 1 3.3138 -4.1561 -0.9988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:25 Heat of formation + Delta-G solvation = -35.929613 kcal Electronic energy + Delta-G solvation = -22848.624377 eV Core-core repulsion = 19730.362672 eV Total energy + Delta-G solvation = -3118.261705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.55061 -39.94644 -37.73234 -35.25821 -34.95214 -33.72864 -32.30731 -28.26014 -28.20021 -27.47020 -27.23125 -24.47617 -22.69800 -22.21101 -20.58750 -19.18975 -18.70421 -17.81596 -17.15491 -16.57469 -16.45300 -16.24526 -15.93815 -15.33910 -15.06674 -14.73287 -14.54682 -14.27024 -14.11864 -13.31156 -13.09277 -13.06161 -12.95344 -12.87988 -12.67459 -12.54381 -12.49746 -12.40003 -12.32214 -12.17018 -12.00043 -11.57816 -11.17650 -11.02662 -10.83944 -10.71318 -10.55813 -9.35703 -8.82558 -8.05469 -5.77163 1.36955 1.45885 1.50703 1.84797 2.44381 2.67229 2.91368 3.35002 3.73612 3.90261 3.95288 3.97014 4.00365 4.10032 4.11197 4.36605 4.49775 4.61731 4.66088 4.77271 4.79651 4.81727 4.82727 4.87475 4.95203 4.98136 4.99588 5.13210 5.16317 5.24876 5.29205 5.42689 5.43748 5.53440 5.62171 5.86287 5.90890 6.20737 6.42937 6.88630 7.25269 7.64945 8.27488 9.02471 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.011006 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.141373 B = 2543.375921 C = 3760.421376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 C -0.127 4.127 4 C -0.176 4.176 5 O -0.400 6.400 6 C 0.634 3.366 7 O -0.530 6.530 8 N -0.580 5.580 9 C 0.141 3.859 10 C -0.163 4.163 11 H 0.135 0.865 12 C -0.170 4.170 13 C -0.136 4.136 14 H 0.116 0.884 15 C -0.084 4.084 16 C 0.279 3.721 17 H 0.008 0.992 18 C -0.505 4.505 19 H 0.043 0.957 20 C 0.108 3.892 21 N -0.915 5.915 22 Si 0.939 3.061 23 H -0.281 1.281 24 H -0.299 1.299 25 H -0.281 1.281 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 9.138 6.622 11.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.091 3.909 3 C -0.184 4.184 4 C -0.233 4.233 5 O -0.317 6.317 6 C 0.390 3.610 7 O -0.418 6.418 8 N -0.320 5.320 9 C 0.017 3.983 10 C -0.181 4.181 11 H 0.153 0.847 12 C -0.207 4.207 13 C -0.154 4.154 14 H 0.134 0.866 15 C -0.123 4.123 16 C 0.181 3.819 17 H 0.026 0.974 18 C -0.542 4.542 19 H 0.061 0.939 20 C -0.094 4.094 21 N -0.556 5.556 22 Si 0.768 3.232 23 H -0.208 1.208 24 H -0.226 1.226 25 H -0.206 1.206 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.917 9.005 6.248 10.999 hybrid contribution -0.242 -0.391 -1.354 1.430 sum -1.159 8.614 4.893 9.974 Atomic orbital electron populations 1.22369 0.94654 1.03078 1.02768 1.22034 0.94134 0.92586 0.82164 1.21795 1.01758 0.90830 1.03970 1.22436 1.00500 1.02419 0.97987 1.86278 1.73251 1.26198 1.46017 1.18798 0.79842 0.79563 0.82790 1.90909 1.40454 1.65421 1.44983 1.47097 1.60357 1.08227 1.16278 1.20662 0.95410 0.96317 0.85870 1.22535 1.05798 0.92225 0.97558 0.84685 1.23117 0.94651 1.00737 1.02199 1.21571 0.95473 0.99274 0.99081 0.86599 1.20687 0.99378 0.99409 0.92819 1.17964 0.94411 0.76013 0.93546 0.97426 1.20940 0.98463 1.43197 0.91613 0.93919 1.25024 0.94364 0.89770 1.00259 1.70078 1.10818 1.51494 1.23215 0.85978 0.79428 0.77027 0.80732 1.20776 1.22629 1.20623 0.91753 0.89916 0.92948 0.92054 0.88439 0.90870 0.92723 0.90200 0.93658 0.94079 0.90082 0.90915 0.85999 0.93303 0.91416 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 8.37 71.98 0.60 -5.39 16 2 C 0.13 4.67 1.13 -10.79 -0.01 4.66 16 3 C -0.13 -3.30 8.85 71.98 0.64 -2.66 16 4 C -0.18 -7.04 8.37 71.99 0.60 -6.43 16 5 O -0.40 -17.45 8.53 -55.47 -0.47 -17.92 16 6 C 0.63 31.66 6.71 129.79 0.87 32.53 16 7 O -0.53 -28.70 4.87 19.81 0.10 -28.60 16 8 N -0.58 -27.49 3.01 -940.68 -2.83 -30.32 16 9 C 0.14 5.32 6.17 86.43 0.53 5.85 16 10 C -0.16 -4.92 6.34 -10.99 -0.07 -4.99 16 11 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 12 C -0.17 -4.84 9.78 30.57 0.30 -4.55 16 13 C -0.14 -4.30 5.91 -11.99 -0.07 -4.37 16 14 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 15 C -0.08 -3.44 5.42 29.60 0.16 -3.27 16 16 C 0.28 14.00 2.46 44.04 0.11 14.11 16 17 H 0.01 0.45 7.98 -2.38 -0.02 0.43 16 18 C -0.51 -28.59 6.43 25.60 0.16 -28.43 16 19 H 0.04 2.47 7.65 -2.91 -0.02 2.44 16 20 C 0.11 6.19 3.01 84.66 0.25 6.44 16 21 N -0.91 -54.42 12.45 21.26 0.26 -54.16 16 22 Si 0.94 48.70 27.45 68.60 1.88 50.58 16 23 H -0.28 -14.77 7.09 99.48 0.71 -14.06 16 24 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 25 H -0.28 -14.23 7.11 99.48 0.71 -13.53 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.05 2.28 5.88 -2.39 -0.01 2.26 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 2.69 5.09 -2.39 -0.01 2.68 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16 36 H 0.08 2.88 7.08 -2.39 -0.02 2.87 16 37 H 0.07 2.43 8.12 -2.38 -0.02 2.41 16 38 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.05 2.06 7.84 -2.39 -0.02 2.04 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -66.92 312.19 4.01 -62.90 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.99 Total: 14.01 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.08 Total: 3.50 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.57 Total: -84.48 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.38 Total: -46.52 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.88 Total: 50.58 kcal Total: -66.92 4.01 -62.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.974 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds