Wall clock time and date at job start Mon Mar 30 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47355 * 2 1 4 4 C 1.53002 * 109.46893 * 119.99555 * 2 1 3 5 5 O 1.45195 * 109.47386 * 239.99351 * 2 1 3 6 6 C 1.34637 * 116.99798 * 60.00260 * 5 2 1 7 7 O 1.21505 * 119.99995 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99689 * 179.97438 * 6 5 2 9 9 C 1.45515 * 118.82089 * 351.95205 * 8 6 5 10 10 C 1.51808 * 111.27868 * 219.88452 * 9 8 6 11 11 H 1.08992 * 114.57269 * 203.59147 * 10 9 8 12 12 C 1.52126 * 120.46777 * 57.97433 * 10 9 8 13 13 C 1.51966 * 119.65550 * 346.45270 * 10 9 8 14 14 H 1.09009 * 116.96522 * 217.24194 * 13 10 9 15 15 C 1.52092 * 121.30440 * 6.70710 * 13 10 9 16 16 C 1.45316 * 118.81592 * 171.68349 * 8 6 5 17 17 H 1.08999 * 108.97361 * 244.74950 * 16 8 6 18 18 C 1.50701 * 108.97595 * 3.44947 * 16 8 6 19 19 H 1.07992 * 120.00267 * 111.68605 * 18 16 8 20 20 C 1.37882 * 120.00250 * 291.68624 * 18 16 8 21 21 N 1.31516 * 119.99572 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 120.00354 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47019 * 89.99992 * 22 20 18 24 24 H 1.48499 * 109.47293 * 210.00273 * 22 20 18 25 25 H 1.48498 * 109.46987 * 329.99994 * 22 20 18 26 26 H 1.09000 * 109.46533 * 60.00380 * 1 2 3 27 27 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47016 * 300.00975 * 1 2 3 29 29 H 1.08996 * 109.47855 * 59.99539 * 3 2 1 30 30 H 1.08999 * 109.47295 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46990 * 299.99340 * 3 2 1 32 32 H 1.09000 * 109.47430 * 59.99723 * 4 2 1 33 33 H 1.08999 * 109.47194 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.46861 * 300.00129 * 4 2 1 35 35 H 1.08999 * 109.12218 * 340.34531 * 9 8 6 36 36 H 1.09002 * 109.11751 * 99.48671 * 9 8 6 37 37 H 1.08992 * 117.54119 * 358.17104 * 12 10 9 38 38 H 1.08992 * 117.53789 * 143.44959 * 12 10 9 39 39 H 1.08998 * 108.88492 * 100.27774 * 15 13 10 40 40 H 1.09007 * 108.88632 * 218.84542 * 15 13 10 41 41 H 0.97008 * 119.99896 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0140 -0.6846 -1.1854 6 6 1.6523 -0.1730 -2.3771 7 8 0.9518 0.8185 -2.4253 8 7 2.0682 -0.7603 -3.5167 9 6 3.0468 -1.8342 -3.4358 10 6 4.0691 -1.7334 -4.5536 11 1 4.5619 -2.6730 -4.8032 12 6 4.9129 -0.4781 -4.7162 13 6 3.8064 -0.8103 -5.7318 14 1 4.1286 -1.1578 -6.7135 15 6 2.6118 0.1309 -5.7472 16 6 1.5188 -0.3023 -4.7817 17 1 0.9440 -1.1115 -5.2321 18 6 0.5999 0.8638 -4.5233 19 1 0.8735 1.8522 -4.8614 20 6 -0.5904 0.6688 -3.8551 21 7 -0.9234 -0.5349 -3.4429 22 14 -1.7298 2.1141 -3.5354 23 1 -2.6770 2.2580 -4.6700 24 1 -2.4906 1.8769 -2.2824 25 1 -0.9275 3.3563 -3.3997 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6766 -1.7488 1.2495 33 1 3.1299 -0.7208 1.2496 34 1 1.6765 -0.2072 2.1393 35 1 3.5606 -1.7776 -2.4761 36 1 2.5323 -2.7924 -3.5092 37 1 4.7315 0.3443 -4.0243 38 1 5.9466 -0.6040 -5.0381 39 1 2.9478 1.1320 -5.4770 40 1 2.1972 0.1583 -6.7550 41 1 -1.7610 -0.6722 -2.9731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998673.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:28 Heat of formation + Delta-G solvation = -17.517361 kcal Electronic energy + Delta-G solvation = -22899.880540 eV Core-core repulsion = 19782.417251 eV Total energy + Delta-G solvation = -3117.463289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74868 -38.31792 -36.00819 -33.47180 -33.13740 -31.82828 -30.47892 -26.86727 -26.66636 -25.85748 -25.39872 -22.42084 -21.01010 -20.81844 -18.92800 -17.49332 -16.82258 -16.02068 -15.54659 -15.12183 -14.70127 -14.25391 -14.08880 -13.56016 -13.45909 -13.11891 -12.69417 -12.54669 -12.17614 -11.99059 -11.83692 -11.50912 -11.29732 -11.24553 -11.13202 -10.97380 -10.74059 -10.61910 -10.46119 -10.38969 -10.33254 -9.86185 -9.39555 -9.32156 -9.19515 -9.01210 -8.85841 -7.31127 -6.86076 -5.88140 -3.62063 3.42629 3.48774 3.55451 3.62002 4.24449 4.47457 4.70786 5.02172 5.20534 5.39400 5.40646 5.42664 5.44866 5.60712 5.69351 5.90666 5.93334 5.99302 6.06349 6.17433 6.20074 6.21949 6.26588 6.36711 6.46710 6.49458 6.51512 6.57321 6.62292 6.68362 6.83067 6.96215 6.98330 7.22130 7.58325 7.69120 8.04254 8.21257 8.34933 9.03164 9.17130 9.78032 10.21900 11.20789 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.011691 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.068123 B = 2394.382571 C = 3706.833181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.142 3.858 3 C -0.178 4.178 4 C -0.136 4.136 5 O -0.399 6.399 6 C 0.648 3.352 7 O -0.507 6.507 8 N -0.571 5.571 9 C 0.144 3.856 10 C -0.153 4.153 11 H 0.097 0.903 12 C -0.182 4.182 13 C -0.140 4.140 14 H 0.091 0.909 15 C -0.092 4.092 16 C 0.275 3.725 17 H 0.040 0.960 18 C -0.485 4.485 19 H 0.057 0.943 20 C 0.130 3.870 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.293 1.293 24 H -0.291 1.291 25 H -0.276 1.276 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 -1.868 3.530 8.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.104 3.896 3 C -0.236 4.236 4 C -0.194 4.194 5 O -0.318 6.318 6 C 0.404 3.596 7 O -0.392 6.392 8 N -0.311 5.311 9 C 0.020 3.980 10 C -0.172 4.172 11 H 0.115 0.885 12 C -0.219 4.219 13 C -0.158 4.158 14 H 0.109 0.891 15 C -0.131 4.131 16 C 0.177 3.823 17 H 0.058 0.942 18 C -0.522 4.522 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.220 1.220 24 H -0.217 1.217 25 H -0.201 1.201 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.388 -1.624 3.617 8.384 hybrid contribution -0.622 0.506 0.432 0.911 sum 6.765 -1.118 4.048 7.963 Atomic orbital electron populations 1.22469 0.94770 1.02420 1.03761 1.21524 0.93863 0.91407 0.82809 1.22464 1.00541 0.96642 1.03908 1.21812 1.01331 1.00796 0.95423 1.86308 1.72269 1.58373 1.14849 1.18653 0.79202 0.82093 0.79657 1.90957 1.37740 1.26295 1.84220 1.47297 1.42476 1.36474 1.04869 1.20214 0.89381 0.91743 0.96685 1.21994 1.01123 0.94567 0.99476 0.88520 1.23013 0.95186 0.99755 1.03901 1.22122 0.98379 1.02022 0.93286 0.89122 1.21193 0.94219 0.97316 1.00327 1.18341 0.88702 0.95855 0.79389 0.94229 1.20849 1.02139 0.93371 1.35871 0.92508 1.24629 0.96325 0.94959 0.91546 1.69978 1.23269 1.20912 1.38636 0.86530 0.79855 0.83915 0.76858 1.22025 1.21724 1.20066 0.88356 0.92896 0.93370 0.92781 0.93158 0.88992 0.92164 0.92332 0.91488 0.90924 0.93354 0.88969 0.89847 0.92334 0.91969 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 8.37 37.16 0.31 -3.28 16 2 C 0.14 2.71 1.13 -90.62 -0.10 2.60 16 3 C -0.18 -3.25 8.37 37.16 0.31 -2.93 16 4 C -0.14 -2.03 8.85 37.16 0.33 -1.70 16 5 O -0.40 -8.86 8.50 -40.32 -0.34 -9.20 16 6 C 0.65 15.95 6.42 54.06 0.35 16.29 16 7 O -0.51 -13.38 5.42 -19.28 -0.10 -13.49 16 8 N -0.57 -13.36 2.93 -176.09 -0.52 -13.88 16 9 C 0.14 2.81 6.29 -5.18 -0.03 2.78 16 10 C -0.15 -2.53 5.99 -92.20 -0.55 -3.09 16 11 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 12 C -0.18 -2.90 9.94 -26.75 -0.27 -3.16 16 13 C -0.14 -2.39 6.17 -91.18 -0.56 -2.95 16 14 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 15 C -0.09 -1.87 5.33 -27.63 -0.15 -2.01 16 16 C 0.27 6.70 2.70 -70.16 -0.19 6.51 16 17 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 18 C -0.49 -13.15 6.40 -34.44 -0.22 -13.37 16 19 H 0.06 1.57 7.64 -52.49 -0.40 1.17 16 20 C 0.13 3.59 3.00 -17.82 -0.05 3.54 16 21 N -0.89 -25.21 11.82 55.43 0.65 -24.55 16 22 Si 0.90 22.72 28.92 -169.99 -4.92 17.81 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H 0.10 2.39 5.88 -51.93 -0.31 2.09 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.98 5.88 -51.93 -0.31 1.68 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.37 7.04 -51.93 -0.37 1.01 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.24 7.76 -51.93 -0.40 0.83 16 40 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 314.32 15.07 4.74 4.74 Total: -1.00 -29.20 314.32 -8.15 -37.35 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.83 Total: 2.00 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.83 Total: -0.78 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.14 Total: -38.43 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.45 Total: -22.69 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.92 Total: 17.81 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.20 -8.15 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998673.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.832 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds