Wall clock time and date at job start Mon Mar 30 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47355 * 2 1 4 4 C 1.53002 * 109.46893 * 119.99555 * 2 1 3 5 5 O 1.45195 * 109.47386 * 239.99351 * 2 1 3 6 6 C 1.34637 * 116.99798 * 60.00260 * 5 2 1 7 7 O 1.21505 * 119.99995 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99689 * 179.97438 * 6 5 2 9 9 C 1.45515 * 118.82089 * 351.95205 * 8 6 5 10 10 C 1.51808 * 111.27868 * 219.88452 * 9 8 6 11 11 H 1.08992 * 114.57269 * 203.59147 * 10 9 8 12 12 C 1.52126 * 120.46777 * 57.97433 * 10 9 8 13 13 C 1.51966 * 119.65550 * 346.45270 * 10 9 8 14 14 H 1.09009 * 116.96522 * 217.24194 * 13 10 9 15 15 C 1.52092 * 121.30440 * 6.70710 * 13 10 9 16 16 C 1.45316 * 118.81592 * 171.68349 * 8 6 5 17 17 H 1.08999 * 108.97361 * 244.74950 * 16 8 6 18 18 C 1.50701 * 108.97595 * 3.44947 * 16 8 6 19 19 H 1.07992 * 120.00267 * 111.68605 * 18 16 8 20 20 C 1.37882 * 120.00250 * 291.68624 * 18 16 8 21 21 N 1.31516 * 119.99572 * 0.02562 * 20 18 16 22 22 Si 1.86796 * 120.00354 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47019 * 89.99992 * 22 20 18 24 24 H 1.48499 * 109.47293 * 210.00273 * 22 20 18 25 25 H 1.48498 * 109.46987 * 329.99994 * 22 20 18 26 26 H 1.09000 * 109.46533 * 60.00380 * 1 2 3 27 27 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47016 * 300.00975 * 1 2 3 29 29 H 1.08996 * 109.47855 * 59.99539 * 3 2 1 30 30 H 1.08999 * 109.47295 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46990 * 299.99340 * 3 2 1 32 32 H 1.09000 * 109.47430 * 59.99723 * 4 2 1 33 33 H 1.08999 * 109.47194 * 180.02562 * 4 2 1 34 34 H 1.09006 * 109.46861 * 300.00129 * 4 2 1 35 35 H 1.08999 * 109.12218 * 340.34531 * 9 8 6 36 36 H 1.09002 * 109.11751 * 99.48671 * 9 8 6 37 37 H 1.08992 * 117.54119 * 358.17104 * 12 10 9 38 38 H 1.08992 * 117.53789 * 143.44959 * 12 10 9 39 39 H 1.08998 * 108.88492 * 100.27774 * 15 13 10 40 40 H 1.09007 * 108.88632 * 218.84542 * 15 13 10 41 41 H 0.97008 * 119.99896 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0140 -0.6846 -1.1854 6 6 1.6523 -0.1730 -2.3771 7 8 0.9518 0.8185 -2.4253 8 7 2.0682 -0.7603 -3.5167 9 6 3.0468 -1.8342 -3.4358 10 6 4.0691 -1.7334 -4.5536 11 1 4.5619 -2.6730 -4.8032 12 6 4.9129 -0.4781 -4.7162 13 6 3.8064 -0.8103 -5.7318 14 1 4.1286 -1.1578 -6.7135 15 6 2.6118 0.1309 -5.7472 16 6 1.5188 -0.3023 -4.7817 17 1 0.9440 -1.1115 -5.2321 18 6 0.5999 0.8638 -4.5233 19 1 0.8735 1.8522 -4.8614 20 6 -0.5904 0.6688 -3.8551 21 7 -0.9234 -0.5349 -3.4429 22 14 -1.7298 2.1141 -3.5354 23 1 -2.6770 2.2580 -4.6700 24 1 -2.4906 1.8769 -2.2824 25 1 -0.9275 3.3563 -3.3997 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6766 -1.7488 1.2495 33 1 3.1299 -0.7208 1.2496 34 1 1.6765 -0.2072 2.1393 35 1 3.5606 -1.7776 -2.4761 36 1 2.5323 -2.7924 -3.5092 37 1 4.7315 0.3443 -4.0243 38 1 5.9466 -0.6040 -5.0381 39 1 2.9478 1.1320 -5.4770 40 1 2.1972 0.1583 -6.7550 41 1 -1.7610 -0.6722 -2.9731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998673.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:28 Heat of formation + Delta-G solvation = -34.194556 kcal Electronic energy + Delta-G solvation = -22900.603718 eV Core-core repulsion = 19782.417251 eV Total energy + Delta-G solvation = -3118.186467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49388 -39.86656 -37.68243 -35.20007 -34.92476 -33.66913 -32.27113 -28.22809 -28.18462 -27.51138 -27.24990 -24.25693 -22.57371 -22.28513 -20.56420 -19.15236 -18.67084 -17.85924 -17.17896 -16.69480 -16.44504 -16.17881 -15.74827 -15.14640 -15.07601 -14.76722 -14.27627 -14.12420 -14.09010 -13.53802 -13.22540 -13.04675 -12.92446 -12.84085 -12.61951 -12.59350 -12.44260 -12.36248 -12.22506 -12.12956 -11.99459 -11.73775 -11.18842 -10.97198 -10.80278 -10.71047 -10.51717 -9.28759 -8.76247 -8.00982 -5.75414 1.36226 1.40853 1.49794 1.89298 2.47366 2.73062 2.92427 3.35863 3.75521 3.84973 3.97788 3.98896 4.05044 4.13259 4.13452 4.47888 4.56391 4.63683 4.67348 4.70981 4.80249 4.83605 4.88043 4.89899 4.94259 5.00402 5.02033 5.12461 5.17380 5.24135 5.30681 5.37961 5.45791 5.57119 5.66204 5.91422 5.94039 6.24484 6.47583 6.90705 7.31296 7.66157 8.36366 9.07190 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.011691 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.068123 B = 2394.382571 C = 3706.833181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 C -0.171 4.171 4 C -0.127 4.127 5 O -0.402 6.402 6 C 0.640 3.360 7 O -0.530 6.530 8 N -0.580 5.580 9 C 0.140 3.860 10 C -0.151 4.151 11 H 0.134 0.866 12 C -0.166 4.166 13 C -0.149 4.149 14 H 0.122 0.878 15 C -0.085 4.085 16 C 0.279 3.721 17 H 0.008 0.992 18 C -0.500 4.500 19 H 0.042 0.958 20 C 0.103 3.897 21 N -0.909 5.909 22 Si 0.937 3.063 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.283 1.283 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.120 0.880 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.844 -2.533 4.338 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.091 3.909 3 C -0.228 4.228 4 C -0.184 4.184 5 O -0.320 6.320 6 C 0.395 3.605 7 O -0.417 6.417 8 N -0.319 5.319 9 C 0.017 3.983 10 C -0.170 4.170 11 H 0.151 0.849 12 C -0.202 4.202 13 C -0.168 4.168 14 H 0.140 0.860 15 C -0.124 4.124 16 C 0.180 3.820 17 H 0.026 0.974 18 C -0.537 4.537 19 H 0.060 0.940 20 C -0.099 4.099 21 N -0.550 5.550 22 Si 0.767 3.233 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.209 1.209 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.505 -2.294 4.428 10.734 hybrid contribution -1.262 0.727 0.267 1.480 sum 8.243 -1.568 4.694 9.615 Atomic orbital electron populations 1.22383 0.95969 1.01497 1.03084 1.22002 0.93201 0.92534 0.83121 1.22363 1.01176 0.95913 1.03360 1.21791 1.02160 1.00585 0.93827 1.86264 1.72259 1.58488 1.14949 1.18652 0.79036 0.82213 0.80566 1.90940 1.38460 1.27299 1.84969 1.47006 1.43105 1.37396 1.04435 1.20403 0.89237 0.90148 0.98550 1.22048 1.00564 0.96526 0.97865 0.84866 1.23016 0.96634 0.98279 1.02307 1.22123 0.97413 1.01997 0.95230 0.85967 1.21015 0.94564 0.97449 0.99341 1.18101 0.89788 0.93769 0.80355 0.97441 1.20969 1.03047 0.93563 1.36120 0.94008 1.24991 0.97299 0.96116 0.91491 1.70054 1.23276 1.21918 1.39792 0.85927 0.78751 0.81942 0.76711 1.21062 1.22096 1.20910 0.92595 0.93864 0.90386 0.89864 0.91990 0.92930 0.92110 0.90999 0.88485 0.90393 0.93646 0.91478 0.86218 0.93798 0.91160 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.93 8.37 71.98 0.60 -6.33 16 2 C 0.13 4.75 1.13 -10.79 -0.01 4.74 16 3 C -0.17 -6.02 8.37 71.98 0.60 -5.41 16 4 C -0.13 -3.37 8.85 71.98 0.64 -2.73 16 5 O -0.40 -17.75 8.50 -55.47 -0.47 -18.22 16 6 C 0.64 32.12 6.42 129.79 0.83 32.95 16 7 O -0.53 -28.95 5.42 19.83 0.11 -28.84 16 8 N -0.58 -27.49 2.93 -941.44 -2.76 -30.26 16 9 C 0.14 5.32 6.29 86.17 0.54 5.86 16 10 C -0.15 -4.58 5.99 -11.81 -0.07 -4.66 16 11 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 12 C -0.17 -4.77 9.94 30.58 0.30 -4.47 16 13 C -0.15 -4.73 6.17 -11.16 -0.07 -4.80 16 14 H 0.12 3.16 8.14 -2.38 -0.02 3.14 16 15 C -0.09 -3.45 5.33 30.01 0.16 -3.29 16 16 C 0.28 13.95 2.70 44.18 0.12 14.07 16 17 H 0.01 0.44 8.07 -2.39 -0.02 0.42 16 18 C -0.50 -28.15 6.40 25.60 0.16 -27.99 16 19 H 0.04 2.41 7.64 -2.91 -0.02 2.39 16 20 C 0.10 5.88 3.00 84.66 0.25 6.13 16 21 N -0.91 -53.53 11.82 21.43 0.25 -53.27 16 22 Si 0.94 48.14 28.92 68.60 1.98 50.12 16 23 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 25 H -0.28 -14.76 7.11 99.48 0.71 -14.05 16 26 H 0.06 2.78 5.88 -2.39 -0.01 2.76 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 2.29 5.88 -2.39 -0.01 2.28 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.08 2.85 7.04 -2.39 -0.02 2.83 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.04 1.88 7.76 -2.39 -0.02 1.86 16 40 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 41 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -66.50 314.32 4.17 -62.33 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.99 Total: 14.06 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 4.07 Total: 4.08 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.51 Total: -83.53 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.36 Total: -47.06 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.98 Total: 50.12 kcal Total: -66.50 4.17 -62.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998673.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.132 kcal (2) G-P(sol) polarization free energy of solvation -66.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds