Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 C 1.52995 * 109.47184 * 239.99799 * 2 1 3 5 5 O 1.45199 * 109.46969 * 119.99456 * 2 1 3 6 6 C 1.34636 * 117.00021 * 60.00550 * 5 2 1 7 7 O 1.21520 * 119.99935 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00706 * 179.97438 * 6 5 2 9 9 C 1.47723 * 134.39801 * 179.97438 * 8 6 5 10 10 C 1.53289 * 85.85276 * 155.90873 * 9 8 6 11 11 C 1.52332 * 128.81371 * 243.37427 * 10 9 8 12 12 C 1.52332 * 128.81769 * 163.01674 * 10 9 8 13 13 H 1.08995 * 117.55246 * 225.31476 * 12 10 9 14 14 C 1.53006 * 117.51359 * 10.45312 * 12 10 9 15 15 C 1.50699 * 109.46866 * 184.81459 * 14 12 10 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 C 1.47729 * 134.38757 * 359.97438 * 8 6 5 24 24 H 1.09001 * 109.47130 * 299.99956 * 1 2 3 25 25 H 1.08999 * 109.46951 * 59.99844 * 1 2 3 26 26 H 1.09000 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47097 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46631 * 300.00141 * 3 2 1 29 29 H 1.08997 * 109.47072 * 59.99487 * 3 2 1 30 30 H 1.09000 * 109.47402 * 299.99838 * 4 2 1 31 31 H 1.08999 * 109.47395 * 60.00454 * 4 2 1 32 32 H 1.09002 * 109.46873 * 179.97438 * 4 2 1 33 33 H 1.08994 * 113.80965 * 41.67499 * 9 8 6 34 34 H 1.09000 * 113.81028 * 270.14050 * 9 8 6 35 35 H 1.09004 * 117.51279 * 134.67099 * 11 10 9 36 36 H 1.08996 * 117.55627 * 349.52795 * 11 10 9 37 37 H 1.08993 * 109.46955 * 304.81678 * 14 12 10 38 38 H 1.09000 * 109.47050 * 64.81507 * 14 12 10 39 39 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 40 40 H 1.09006 * 113.80686 * 89.86050 * 23 8 6 41 41 H 1.08994 * 113.81023 * 318.32858 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9510 -2.5095 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 1.8710 -4.0495 2.8946 10 6 3.1799 -3.8507 3.6673 11 6 4.5039 -4.5869 3.5079 12 6 3.7350 -4.6631 4.8302 13 1 4.1399 -4.1144 5.6805 14 6 3.0375 -5.9825 5.1673 15 6 3.6537 -6.5734 6.4092 16 1 4.4623 -6.0595 6.9078 17 6 3.1861 -7.7706 6.9082 18 7 2.2019 -8.3967 6.3007 19 14 3.9494 -8.5027 8.4479 20 1 3.7877 -7.5547 9.5794 21 1 3.2727 -9.7833 8.7751 22 1 5.3946 -8.7518 8.2136 23 6 2.9027 -2.3450 3.5928 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7208 -1.2493 33 1 1.9345 -4.8002 2.1069 34 1 0.9970 -4.1740 3.5340 35 1 5.4142 -3.9876 3.4885 36 1 4.5134 -5.4770 2.8789 37 1 1.9771 -5.7992 5.3398 38 1 3.1555 -6.6784 4.3367 39 1 1.8727 -9.2387 6.6520 40 1 2.3377 -1.9590 4.4413 41 1 3.7828 -1.7466 3.3577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260344689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -26.900300 kcal Electronic energy + Delta-G solvation = -20415.536401 eV Core-core repulsion = 17297.666237 eV Total energy + Delta-G solvation = -3117.870164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73665 -39.38992 -36.68995 -34.92678 -33.97057 -32.61055 -28.62119 -27.56934 -27.49628 -27.25256 -26.11528 -23.27623 -21.94451 -20.23182 -19.31440 -18.06405 -17.56328 -16.71716 -16.42493 -16.10115 -15.18921 -14.82035 -14.67262 -14.17855 -14.02015 -13.87392 -13.23797 -12.99411 -12.64710 -12.32953 -12.29108 -12.08975 -12.01740 -11.93938 -11.72404 -11.55334 -11.35090 -11.10680 -10.83239 -10.67334 -10.42368 -10.40798 -10.04513 -9.94131 -9.41046 -9.35146 -8.82935 -8.58449 -8.32001 -6.03094 -4.05462 2.08499 2.97724 3.32098 3.37069 3.38923 3.80300 4.30258 4.42668 4.58635 4.60161 4.62658 4.76938 4.97323 5.28008 5.29563 5.32228 5.37774 5.49081 5.52440 5.54952 5.59257 5.63725 5.72489 5.78830 5.82441 5.86211 5.97176 6.15500 6.17502 6.20935 6.23024 6.29508 6.54352 6.65064 6.95239 7.61333 7.70566 7.85573 7.94721 8.36981 8.44682 8.99711 9.58432 11.07983 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.050157 B = 0.003272 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.108417 B = 8556.136560 C = 8750.807242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.672 3.328 7 O -0.575 6.575 8 N -0.628 5.628 9 C 0.177 3.823 10 C -0.199 4.199 11 C -0.145 4.145 12 C -0.084 4.084 13 H 0.100 0.900 14 C 0.047 3.953 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.148 3.852 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.089 0.911 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 17.264 -10.876 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.428 3.572 7 O -0.465 6.465 8 N -0.370 5.370 9 C 0.057 3.943 10 C -0.200 4.200 11 C -0.182 4.182 12 C -0.103 4.103 13 H 0.118 0.882 14 C 0.010 3.990 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.026 3.974 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.342 17.128 -11.366 20.559 hybrid contribution 0.303 -0.366 0.730 0.871 sum -0.038 16.762 -10.636 19.852 Atomic orbital electron populations 1.22512 0.94140 1.05122 1.02234 1.22025 0.94316 0.91458 0.82422 1.21844 1.02195 0.92674 1.02934 1.22513 1.01511 1.03621 0.96370 1.86307 1.71837 1.23729 1.46022 1.17486 0.78125 0.79975 0.81596 1.90877 1.41738 1.70475 1.43407 1.48728 1.53325 1.14683 1.20216 1.22583 0.96659 0.80084 0.94978 1.22656 0.96068 0.93654 1.07575 1.22904 0.91988 1.00820 1.02500 1.22762 0.99055 0.98945 0.89571 0.88244 1.18769 0.95297 0.88156 0.96769 1.21162 1.18297 1.05855 1.10340 0.92559 1.25012 0.95085 0.97068 0.97285 1.69945 1.26574 1.16774 1.40130 0.86644 0.79397 0.78402 0.83475 1.20244 1.21342 1.20246 1.22688 0.93243 0.95371 0.86145 0.92270 0.91312 0.89324 0.91541 0.90282 0.91552 0.89303 0.91341 0.92251 0.89912 0.88781 0.89437 0.88638 0.95805 0.96026 0.92872 0.89276 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 2 C 0.13 1.56 1.13 -90.62 -0.10 1.45 16 3 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 4 C -0.18 -2.06 8.37 37.15 0.31 -1.75 16 5 O -0.36 -5.29 9.87 -40.31 -0.40 -5.68 16 6 C 0.67 11.14 8.22 54.05 0.44 11.58 16 7 O -0.57 -10.55 12.61 -19.29 -0.24 -10.79 16 8 N -0.63 -9.99 3.61 -187.62 -0.68 -10.67 16 9 C 0.18 2.89 8.62 -3.23 -0.03 2.86 16 10 C -0.20 -3.18 3.08 -155.02 -0.48 -3.65 16 11 C -0.15 -2.38 10.18 -26.99 -0.27 -2.65 16 12 C -0.08 -1.59 5.70 -90.88 -0.52 -2.11 16 13 H 0.10 1.82 8.00 -51.93 -0.42 1.41 16 14 C 0.05 1.13 5.06 -27.88 -0.14 0.99 16 15 C -0.52 -13.96 9.08 -34.44 -0.31 -14.27 16 16 H 0.06 1.46 7.68 -52.48 -0.40 1.06 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.15 2.05 8.89 -3.22 -0.03 2.02 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.24 5.88 -51.93 -0.31 0.94 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.10 1.62 8.04 -51.93 -0.42 1.20 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.02 0.56 7.88 -51.93 -0.41 0.15 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -30.43 338.75 -7.97 -38.40 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.89 Total: -0.41 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.58 Total: -6.62 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.06 Total: -36.06 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.64 Total: -16.47 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.43 -7.97 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260344689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.495 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds