Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 C 1.52995 * 109.47184 * 239.99799 * 2 1 3 5 5 O 1.45199 * 109.46969 * 119.99456 * 2 1 3 6 6 C 1.34636 * 117.00021 * 60.00550 * 5 2 1 7 7 O 1.21520 * 119.99935 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00706 * 179.97438 * 6 5 2 9 9 C 1.47723 * 134.39801 * 179.97438 * 8 6 5 10 10 C 1.53289 * 85.85276 * 155.90873 * 9 8 6 11 11 C 1.52332 * 128.81371 * 243.37427 * 10 9 8 12 12 C 1.52332 * 128.81769 * 163.01674 * 10 9 8 13 13 H 1.08995 * 117.55246 * 225.31476 * 12 10 9 14 14 C 1.53006 * 117.51359 * 10.45312 * 12 10 9 15 15 C 1.50699 * 109.46866 * 184.81459 * 14 12 10 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 C 1.47729 * 134.38757 * 359.97438 * 8 6 5 24 24 H 1.09001 * 109.47130 * 299.99956 * 1 2 3 25 25 H 1.08999 * 109.46951 * 59.99844 * 1 2 3 26 26 H 1.09000 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47097 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46631 * 300.00141 * 3 2 1 29 29 H 1.08997 * 109.47072 * 59.99487 * 3 2 1 30 30 H 1.09000 * 109.47402 * 299.99838 * 4 2 1 31 31 H 1.08999 * 109.47395 * 60.00454 * 4 2 1 32 32 H 1.09002 * 109.46873 * 179.97438 * 4 2 1 33 33 H 1.08994 * 113.80965 * 41.67499 * 9 8 6 34 34 H 1.09000 * 113.81028 * 270.14050 * 9 8 6 35 35 H 1.09004 * 117.51279 * 134.67099 * 11 10 9 36 36 H 1.08996 * 117.55627 * 349.52795 * 11 10 9 37 37 H 1.08993 * 109.46955 * 304.81678 * 14 12 10 38 38 H 1.09000 * 109.47050 * 64.81507 * 14 12 10 39 39 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 40 40 H 1.09006 * 113.80686 * 89.86050 * 23 8 6 41 41 H 1.08994 * 113.81023 * 318.32858 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9510 -2.5095 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 1.8710 -4.0495 2.8946 10 6 3.1799 -3.8507 3.6673 11 6 4.5039 -4.5869 3.5079 12 6 3.7350 -4.6631 4.8302 13 1 4.1399 -4.1144 5.6805 14 6 3.0375 -5.9825 5.1673 15 6 3.6537 -6.5734 6.4092 16 1 4.4623 -6.0595 6.9078 17 6 3.1861 -7.7706 6.9082 18 7 2.2019 -8.3967 6.3007 19 14 3.9494 -8.5027 8.4479 20 1 3.7877 -7.5547 9.5794 21 1 3.2727 -9.7833 8.7751 22 1 5.3946 -8.7518 8.2136 23 6 2.9027 -2.3450 3.5928 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7208 -1.2493 33 1 1.9345 -4.8002 2.1069 34 1 0.9970 -4.1740 3.5340 35 1 5.4142 -3.9876 3.4885 36 1 4.5134 -5.4770 2.8789 37 1 1.9771 -5.7992 5.3398 38 1 3.1555 -6.6784 4.3367 39 1 1.8727 -9.2387 6.6520 40 1 2.3377 -1.9590 4.4413 41 1 3.7828 -1.7466 3.3577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260344689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -43.947744 kcal Electronic energy + Delta-G solvation = -20416.275634 eV Core-core repulsion = 17297.666237 eV Total energy + Delta-G solvation = -3118.609397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.93007 -40.62329 -37.88677 -36.40862 -35.02332 -34.53474 -30.39804 -28.68914 -28.37247 -28.29486 -27.35375 -25.22025 -23.03520 -21.69532 -20.47421 -19.40014 -18.81910 -18.43669 -17.70117 -17.38436 -16.59055 -16.30049 -15.91669 -15.50354 -15.12251 -14.98752 -14.56625 -14.22442 -14.16923 -13.70090 -13.33352 -13.25953 -13.14463 -12.96138 -12.88689 -12.86572 -12.66433 -12.50994 -12.38174 -12.31602 -11.87544 -11.54321 -11.40392 -11.34699 -11.20317 -10.97862 -10.55880 -10.28238 -9.82047 -8.14865 -6.24556 0.92692 1.44562 1.46724 1.54345 1.71854 2.44729 2.68439 2.98572 3.19605 3.28604 3.65879 3.75907 3.79858 3.94673 4.09385 4.19885 4.36895 4.49946 4.51981 4.56793 4.60910 4.63649 4.75665 4.82230 4.84060 4.87712 4.90235 4.91541 4.95115 5.08489 5.12385 5.27767 5.32517 5.33587 5.47103 5.58720 5.71901 5.88821 6.30330 6.62139 6.91462 7.21107 7.44102 8.96404 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.050157 B = 0.003272 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.108417 B = 8556.136560 C = 8750.807242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 C -0.133 4.133 4 C -0.179 4.179 5 O -0.365 6.365 6 C 0.668 3.332 7 O -0.600 6.600 8 N -0.632 5.632 9 C 0.168 3.832 10 C -0.184 4.184 11 C -0.133 4.133 12 C -0.102 4.102 13 H 0.110 0.890 14 C 0.054 3.946 15 C -0.533 4.533 16 H 0.065 0.935 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.962 3.038 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.267 1.267 23 C 0.159 3.841 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.084 0.916 37 H -0.003 1.003 38 H -0.007 1.007 39 H 0.262 0.738 40 H 0.106 0.894 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 19.692 -10.718 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.084 3.916 3 C -0.189 4.189 4 C -0.236 4.236 5 O -0.279 6.279 6 C 0.425 3.575 7 O -0.492 6.492 8 N -0.374 5.374 9 C 0.047 3.953 10 C -0.184 4.184 11 C -0.170 4.170 12 C -0.121 4.121 13 H 0.128 0.872 14 C 0.017 3.983 15 C -0.571 4.571 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.787 3.213 20 H -0.191 1.191 21 H -0.214 1.214 22 H -0.192 1.192 23 C 0.038 3.962 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.086 19.589 -11.204 22.593 hybrid contribution -0.184 -1.103 0.600 1.269 sum 0.902 18.486 -10.605 21.331 Atomic orbital electron populations 1.22470 0.94078 1.03392 1.03708 1.22497 0.94652 0.92937 0.81481 1.21872 1.02439 0.90196 1.04443 1.22470 1.01613 1.02006 0.97557 1.86319 1.71754 1.22390 1.47479 1.17620 0.77905 0.80635 0.81325 1.90873 1.42808 1.71216 1.44286 1.48739 1.53532 1.14388 1.20730 1.22579 0.97127 0.80663 0.94896 1.22614 0.95639 0.95267 1.04926 1.22960 0.93372 1.00875 0.99804 1.22384 1.01120 0.97269 0.91295 0.87193 1.18546 0.94316 0.90455 0.94990 1.21660 1.18294 1.06053 1.11122 0.91708 1.25941 0.95569 0.97747 1.00648 1.70090 1.28231 1.17252 1.41988 0.85549 0.78710 0.77488 0.79598 1.19087 1.21395 1.19233 1.22816 0.93905 0.93654 0.85823 0.91967 0.88671 0.92553 0.91170 0.87639 0.91170 0.92556 0.88693 0.91987 0.91027 0.89008 0.86317 0.89783 0.98437 0.98882 0.92952 0.87580 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.77 8.37 71.98 0.60 -3.17 16 2 C 0.12 2.56 1.13 -10.79 -0.01 2.55 16 3 C -0.13 -1.79 8.85 71.98 0.64 -1.15 16 4 C -0.18 -3.79 8.37 71.98 0.60 -3.19 16 5 O -0.36 -10.07 9.87 -55.45 -0.55 -10.62 16 6 C 0.67 21.95 8.22 129.79 1.07 23.02 16 7 O -0.60 -22.54 12.61 19.78 0.25 -22.29 16 8 N -0.63 -19.68 3.61 -977.91 -3.53 -23.21 16 9 C 0.17 5.59 8.62 86.24 0.74 6.33 16 10 C -0.18 -5.71 3.08 -52.39 -0.16 -5.87 16 11 C -0.13 -4.19 10.18 30.42 0.31 -3.88 16 12 C -0.10 -3.79 5.70 -10.96 -0.06 -3.85 16 13 H 0.11 3.86 8.00 -2.39 -0.02 3.84 16 14 C 0.05 2.68 5.06 29.85 0.15 2.83 16 15 C -0.53 -29.03 9.08 25.60 0.23 -28.80 16 16 H 0.06 3.33 7.68 -2.91 -0.02 3.31 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 18 N -0.94 -56.10 13.29 21.45 0.28 -55.81 16 19 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 C 0.16 4.04 8.89 86.24 0.77 4.81 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.58 5.88 -2.39 -0.01 1.56 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 36 H 0.08 2.84 8.04 -2.39 -0.02 2.82 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H -0.01 -0.39 7.88 -2.39 -0.02 -0.41 16 39 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.51 338.75 4.81 -62.70 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.99 Total: 13.89 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.34 Total: -10.00 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -3.25 Total: -79.02 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.30 Total: -32.91 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -67.51 4.81 -62.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260344689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.755 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds