Wall clock time and date at job start Mon Mar 30 2020 06:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 C 1.53007 * 109.46877 * 240.00053 * 2 1 3 5 5 O 1.45196 * 109.46941 * 120.00435 * 2 1 3 6 6 C 1.34637 * 117.00079 * 59.99672 * 5 2 1 7 7 O 1.21505 * 120.00112 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99624 * 179.97438 * 6 5 2 9 9 C 1.45654 * 119.49133 * 0.02821 * 8 6 5 10 10 C 1.51599 * 111.75353 * 141.20163 * 9 8 6 11 11 C 1.50823 * 113.53666 * 55.89650 * 10 9 8 12 12 C 1.52212 * 113.12212 * 312.85850 * 11 10 9 13 13 H 1.09006 * 115.21072 * 233.21907 * 12 11 10 14 14 C 1.53581 * 116.46023 * 89.95274 * 12 11 10 15 15 H 1.09001 * 117.50988 * 357.19890 * 14 12 11 16 16 C 1.50701 * 117.51350 * 142.28397 * 14 12 11 17 17 H 1.08007 * 119.99776 * 0.02562 * 16 14 12 18 18 C 1.37875 * 120.00173 * 180.02562 * 16 14 12 19 19 N 1.31509 * 119.99776 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99792 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47197 * 60.00058 * 20 18 16 22 22 H 1.48499 * 109.46688 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46955 * 299.99402 * 20 18 16 24 24 C 1.45909 * 119.48821 * 180.02562 * 8 6 5 25 25 H 1.08998 * 115.19645 * 337.42397 * 24 8 6 26 26 H 1.08997 * 109.47060 * 300.00055 * 1 2 3 27 27 H 1.09002 * 109.46492 * 59.99821 * 1 2 3 28 28 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46559 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47137 * 300.00210 * 3 2 1 31 31 H 1.08997 * 109.47134 * 59.99990 * 3 2 1 32 32 H 1.09000 * 109.46939 * 300.00143 * 4 2 1 33 33 H 1.09005 * 109.47109 * 60.00035 * 4 2 1 34 34 H 1.08999 * 109.46916 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.02505 * 261.78322 * 9 8 6 36 36 H 1.08996 * 109.02813 * 20.61443 * 9 8 6 37 37 H 1.08994 * 108.73816 * 177.32094 * 10 9 8 38 38 H 1.08998 * 108.73718 * 295.40433 * 10 9 8 39 39 H 1.09005 * 109.54673 * 191.27499 * 11 10 9 40 40 H 1.08997 * 107.76230 * 73.19060 * 11 10 9 41 41 H 0.97004 * 119.99564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0680 -2.6658 2.4166 9 6 2.9080 -2.0108 3.4101 10 6 2.5427 -2.4316 4.8199 11 6 2.5905 -3.9237 5.0347 12 6 1.8873 -4.7085 3.9363 13 1 1.1335 -5.4163 4.2813 14 6 2.7480 -5.1245 2.7343 15 1 3.7867 -4.7945 2.7205 16 6 2.4877 -6.4790 2.1272 17 1 1.7190 -7.1165 2.5387 18 6 3.2308 -6.9046 1.0467 19 7 4.1671 -6.1286 0.5460 20 14 2.9076 -8.5834 0.2938 21 1 1.5044 -8.6480 -0.1880 22 1 3.8327 -8.8004 -0.8473 23 1 3.1284 -9.6359 1.3179 24 6 1.6698 -4.0610 2.5707 25 1 0.7706 -4.3497 2.0264 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7209 -1.2496 35 1 3.9498 -2.2696 3.2208 36 1 2.7894 -0.9311 3.3195 37 1 3.2292 -1.9518 5.5175 38 1 1.5309 -2.0888 5.0366 39 1 2.1305 -4.1693 5.9919 40 1 3.6385 -4.2219 5.0641 41 1 4.6897 -6.4279 -0.2144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:24 Heat of formation + Delta-G solvation = -66.285114 kcal Electronic energy + Delta-G solvation = -21610.703503 eV Core-core repulsion = 18491.125485 eV Total energy + Delta-G solvation = -3119.578018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38156 -38.60172 -36.17144 -34.28420 -33.34790 -32.22858 -31.70633 -27.28651 -27.15404 -26.54402 -25.00804 -23.00687 -21.98171 -19.95516 -19.32440 -18.03397 -17.23258 -16.45501 -16.19032 -15.65789 -14.92175 -14.69207 -14.21641 -14.10326 -13.86479 -13.32885 -13.20610 -12.84914 -12.80525 -12.37354 -12.00419 -11.72761 -11.69119 -11.47690 -11.35023 -11.20230 -10.99589 -10.98876 -10.78612 -10.75987 -10.39988 -10.11995 -10.03363 -9.86798 -9.45043 -9.26881 -8.72389 -8.38654 -7.49476 -6.09164 -4.08876 2.67970 3.31405 3.36312 3.38794 3.47932 4.31868 4.40637 4.86553 4.90959 4.93653 5.09388 5.23885 5.27239 5.39920 5.49791 5.54953 5.65574 5.72760 5.79648 5.88188 5.89044 5.98767 6.05235 6.09274 6.12892 6.27525 6.30334 6.46396 6.48648 6.59411 6.63158 6.65792 6.79308 6.82725 7.04388 7.41013 7.60288 7.85997 8.09346 8.37558 8.91204 9.02756 9.50828 11.00604 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.006593 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.794761 B = 4245.663611 C = 5336.489725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.370 6.370 6 C 0.649 3.351 7 O -0.566 6.566 8 N -0.550 5.550 9 C 0.116 3.884 10 C -0.124 4.124 11 C -0.081 4.081 12 C -0.196 4.196 13 H 0.095 0.905 14 C 0.042 3.958 15 H 0.080 0.920 16 C -0.498 4.498 17 H 0.061 0.939 18 C 0.071 3.929 19 N -0.878 5.878 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.067 3.933 25 H 0.118 0.882 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 13.158 3.057 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.286 6.286 6 C 0.403 3.597 7 O -0.455 6.455 8 N -0.287 5.287 9 C -0.007 4.007 10 C -0.163 4.163 11 C -0.119 4.119 12 C -0.215 4.215 13 H 0.113 0.887 14 C 0.022 3.978 15 H 0.098 0.902 16 C -0.535 4.535 17 H 0.079 0.921 18 C -0.134 4.134 19 N -0.514 5.514 20 Si 0.725 3.275 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.035 4.035 25 H 0.136 0.864 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.906 13.074 2.614 13.646 hybrid contribution -0.157 -0.754 -0.475 0.905 sum -3.063 12.320 2.139 12.874 Atomic orbital electron populations 1.22504 0.94444 1.05164 1.01764 1.21930 0.94066 0.91264 0.82874 1.21830 1.02144 0.92975 1.02572 1.22507 1.01608 1.03906 0.96016 1.86253 1.72027 1.24498 1.45775 1.17886 0.79422 0.79882 0.82496 1.90853 1.41759 1.70073 1.42845 1.45862 1.51617 1.11234 1.19998 1.20916 0.94686 0.96893 0.88192 1.20998 1.01788 0.97581 0.95886 1.20352 1.00584 0.93373 0.97604 1.22768 1.05883 1.03139 0.89737 0.88710 1.20468 0.92687 0.93132 0.91529 0.90228 1.20597 1.19218 0.99412 1.14304 0.92065 1.25043 0.94486 0.97416 0.96443 1.69958 1.21165 1.36610 1.23698 0.86571 0.78387 0.83828 0.78744 1.19966 1.21171 1.20020 1.22159 1.04855 0.77456 0.99061 0.86399 0.92563 0.91639 0.89185 0.91613 0.90559 0.91803 0.88944 0.91746 0.92249 0.92280 0.90265 0.91206 0.92411 0.92330 0.92318 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 8.37 37.16 0.31 -2.25 16 2 C 0.14 2.02 1.13 -90.61 -0.10 1.92 16 3 C -0.14 -1.51 8.85 37.16 0.33 -1.18 16 4 C -0.18 -2.85 8.37 37.16 0.31 -2.54 16 5 O -0.37 -6.65 8.49 -40.32 -0.34 -6.99 16 6 C 0.65 13.81 7.68 54.06 0.42 14.22 16 7 O -0.57 -13.39 11.48 -19.28 -0.22 -13.62 16 8 N -0.55 -11.55 3.13 -174.40 -0.55 -12.10 16 9 C 0.12 1.99 6.10 -5.21 -0.03 1.95 16 10 C -0.12 -1.84 5.84 -28.53 -0.17 -2.01 16 11 C -0.08 -1.37 5.79 -28.23 -0.16 -1.53 16 12 C -0.20 -4.06 5.97 -90.88 -0.54 -4.60 16 13 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 14 C 0.04 1.06 5.01 -91.81 -0.46 0.60 16 15 H 0.08 2.19 7.90 -51.93 -0.41 1.78 16 16 C -0.50 -13.81 9.20 -34.44 -0.32 -14.13 16 17 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 18 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 19 N -0.88 -25.93 13.12 55.43 0.73 -25.20 16 20 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C 0.07 1.56 5.74 -68.75 -0.39 1.17 16 25 H 0.12 2.98 7.53 -51.93 -0.39 2.59 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.55 5.88 -51.93 -0.31 1.25 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.78 5.88 -51.93 -0.31 1.48 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.20 7.00 -51.93 -0.36 0.84 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.00 8.04 -51.93 -0.42 0.59 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -30.86 326.68 -8.20 -39.06 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.81 Total: 3.98 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.91 Total: -6.50 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.18 Total: -37.30 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.56 Total: -20.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.86 -8.20 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.227 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds