Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47250 * 2 1 4 4 C 1.53007 * 109.46877 * 240.00053 * 2 1 3 5 5 O 1.45196 * 109.46941 * 120.00435 * 2 1 3 6 6 C 1.34637 * 117.00079 * 59.99672 * 5 2 1 7 7 O 1.21505 * 120.00112 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99624 * 179.97438 * 6 5 2 9 9 C 1.45654 * 119.49133 * 0.02821 * 8 6 5 10 10 C 1.51599 * 111.75353 * 141.20163 * 9 8 6 11 11 C 1.50823 * 113.53666 * 55.89650 * 10 9 8 12 12 C 1.52212 * 113.12212 * 312.85850 * 11 10 9 13 13 H 1.09006 * 115.21072 * 233.21907 * 12 11 10 14 14 C 1.53581 * 116.46023 * 89.95274 * 12 11 10 15 15 H 1.09001 * 117.50988 * 357.19890 * 14 12 11 16 16 C 1.50701 * 117.51350 * 142.28397 * 14 12 11 17 17 H 1.08007 * 119.99776 * 0.02562 * 16 14 12 18 18 C 1.37875 * 120.00173 * 180.02562 * 16 14 12 19 19 N 1.31509 * 119.99776 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99792 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47197 * 60.00058 * 20 18 16 22 22 H 1.48499 * 109.46688 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46955 * 299.99402 * 20 18 16 24 24 C 1.45909 * 119.48821 * 180.02562 * 8 6 5 25 25 H 1.08998 * 115.19645 * 337.42397 * 24 8 6 26 26 H 1.08997 * 109.47060 * 300.00055 * 1 2 3 27 27 H 1.09002 * 109.46492 * 59.99821 * 1 2 3 28 28 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46559 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47137 * 300.00210 * 3 2 1 31 31 H 1.08997 * 109.47134 * 59.99990 * 3 2 1 32 32 H 1.09000 * 109.46939 * 300.00143 * 4 2 1 33 33 H 1.09005 * 109.47109 * 60.00035 * 4 2 1 34 34 H 1.08999 * 109.46916 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.02505 * 261.78322 * 9 8 6 36 36 H 1.08996 * 109.02813 * 20.61443 * 9 8 6 37 37 H 1.08994 * 108.73816 * 177.32094 * 10 9 8 38 38 H 1.08998 * 108.73718 * 295.40433 * 10 9 8 39 39 H 1.09005 * 109.54673 * 191.27499 * 11 10 9 40 40 H 1.08997 * 107.76230 * 73.19060 * 11 10 9 41 41 H 0.97004 * 119.99564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0680 -2.6658 2.4166 9 6 2.9080 -2.0108 3.4101 10 6 2.5427 -2.4316 4.8199 11 6 2.5905 -3.9237 5.0347 12 6 1.8873 -4.7085 3.9363 13 1 1.1335 -5.4163 4.2813 14 6 2.7480 -5.1245 2.7343 15 1 3.7867 -4.7945 2.7205 16 6 2.4877 -6.4790 2.1272 17 1 1.7190 -7.1165 2.5387 18 6 3.2308 -6.9046 1.0467 19 7 4.1671 -6.1286 0.5460 20 14 2.9076 -8.5834 0.2938 21 1 1.5044 -8.6480 -0.1880 22 1 3.8327 -8.8004 -0.8473 23 1 3.1284 -9.6359 1.3179 24 6 1.6698 -4.0610 2.5707 25 1 0.7706 -4.3497 2.0264 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7209 -1.2496 35 1 3.9498 -2.2696 3.2208 36 1 2.7894 -0.9311 3.3195 37 1 3.2292 -1.9518 5.5175 38 1 1.5309 -2.0888 5.0366 39 1 2.1305 -4.1693 5.9919 40 1 3.6385 -4.2219 5.0641 41 1 4.6897 -6.4279 -0.2144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -84.477353 kcal Electronic energy + Delta-G solvation = -21611.492377 eV Core-core repulsion = 18491.125485 eV Total energy + Delta-G solvation = -3120.366893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92586 -40.15825 -37.70789 -35.93546 -34.89621 -33.88741 -33.39727 -28.36418 -28.34699 -28.24422 -26.81412 -24.56815 -23.46596 -21.74884 -20.79768 -19.62111 -18.76754 -18.45394 -17.63594 -17.20598 -16.65844 -16.39072 -15.55740 -15.49292 -15.32154 -14.82330 -14.48665 -14.46355 -14.23969 -13.53300 -13.27749 -13.21800 -13.11133 -12.92445 -12.85651 -12.83357 -12.58557 -12.38830 -12.29982 -12.22709 -12.15295 -11.62994 -11.49963 -11.37387 -11.29063 -10.97005 -10.75787 -10.24262 -9.25447 -8.23083 -6.28196 1.17907 1.38371 1.41689 1.48954 1.82272 2.37702 2.89164 3.00385 3.36471 3.78686 3.81900 3.95975 3.97033 4.03678 4.10405 4.32267 4.43653 4.53520 4.59607 4.61294 4.66300 4.74826 4.76326 4.83044 4.86609 4.89648 4.93506 5.06597 5.13249 5.18854 5.30477 5.30868 5.36784 5.40367 5.49415 5.54006 5.72735 5.77253 6.26254 6.50328 6.77061 7.33746 7.40304 8.87241 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.006593 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.794761 B = 4245.663611 C = 5336.489725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.120 3.880 3 C -0.129 4.129 4 C -0.181 4.181 5 O -0.365 6.365 6 C 0.643 3.357 7 O -0.600 6.600 8 N -0.557 5.557 9 C 0.109 3.891 10 C -0.118 4.118 11 C -0.083 4.083 12 C -0.157 4.157 13 H 0.101 0.899 14 C 0.006 3.994 15 H 0.050 0.950 16 C -0.516 4.516 17 H 0.063 0.937 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C 0.067 3.933 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 14.962 4.410 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.084 3.916 3 C -0.186 4.186 4 C -0.238 4.238 5 O -0.280 6.280 6 C 0.398 3.602 7 O -0.491 6.491 8 N -0.294 5.294 9 C -0.012 4.012 10 C -0.156 4.156 11 C -0.120 4.120 12 C -0.177 4.177 13 H 0.119 0.881 14 C -0.014 4.014 15 H 0.068 0.932 16 C -0.553 4.553 17 H 0.081 0.919 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.037 4.037 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.357 14.902 3.998 15.790 hybrid contribution -0.038 -1.234 -0.927 1.544 sum -3.395 13.668 3.070 14.414 Atomic orbital electron populations 1.22441 0.93829 1.03237 1.03823 1.22472 0.94865 0.92973 0.81267 1.21853 1.02269 0.89806 1.04675 1.22469 1.01216 1.01853 0.98254 1.86265 1.71815 1.22560 1.47318 1.18111 0.79110 0.80902 0.82098 1.90843 1.43194 1.71110 1.43961 1.45935 1.52035 1.10498 1.20961 1.21224 0.93329 0.97911 0.88765 1.20997 1.03574 0.96169 0.94812 1.20452 1.00001 0.94364 0.97195 1.22860 1.03660 1.01791 0.89360 0.88077 1.20292 0.91843 0.93161 0.96137 0.93178 1.21007 1.19048 1.00724 1.14517 0.91904 1.25924 0.94380 1.01362 0.96994 1.70098 1.22571 1.38631 1.24440 0.85527 0.78059 0.79485 0.78128 1.19821 1.20869 1.18364 1.21660 1.02384 0.78708 1.00983 0.89476 0.91379 0.88667 0.93015 0.91467 0.87600 0.90522 0.93421 0.88451 0.92749 0.93491 0.88003 0.87137 0.91312 0.88966 0.92714 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.77 8.37 71.98 0.60 -4.16 16 2 C 0.12 3.44 1.13 -10.79 -0.01 3.43 16 3 C -0.13 -2.41 8.85 71.98 0.64 -1.77 16 4 C -0.18 -5.64 8.37 71.98 0.60 -5.04 16 5 O -0.36 -12.99 8.49 -55.47 -0.47 -13.47 16 6 C 0.64 28.20 7.68 129.79 1.00 29.20 16 7 O -0.60 -30.05 11.48 19.83 0.23 -29.82 16 8 N -0.56 -23.86 3.13 -936.07 -2.93 -26.79 16 9 C 0.11 3.61 6.10 86.08 0.53 4.13 16 10 C -0.12 -3.11 5.84 29.43 0.17 -2.94 16 11 C -0.08 -2.56 5.79 29.63 0.17 -2.39 16 12 C -0.16 -6.48 5.97 -10.96 -0.07 -6.55 16 13 H 0.10 4.02 8.14 -2.38 -0.02 4.00 16 14 C 0.01 0.30 5.01 -11.57 -0.06 0.24 16 15 H 0.05 2.91 7.90 -2.39 -0.02 2.90 16 16 C -0.52 -29.65 9.20 25.60 0.24 -29.41 16 17 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 18 C 0.01 0.77 5.46 84.65 0.46 1.23 16 19 N -0.92 -56.80 13.12 21.45 0.28 -56.52 16 20 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 24 C 0.07 3.21 5.74 44.78 0.26 3.47 16 25 H 0.09 4.69 7.53 -2.39 -0.02 4.67 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.82 5.88 -2.39 -0.01 1.81 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.93 5.88 -2.39 -0.01 1.92 16 33 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.10 2.87 7.00 -2.39 -0.02 2.86 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 41 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -72.45 326.68 4.66 -67.80 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.99 Total: 22.09 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.53 Total: -10.56 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -2.65 Total: -83.31 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -0.24 Total: -43.28 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.45 4.66 -67.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.681 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds