Wall clock time and date at job start Mon Mar 30 2020 06:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47055 * 2 1 4 4 C 1.52994 * 109.47491 * 240.00074 * 2 1 3 5 5 O 1.45204 * 109.46840 * 119.99888 * 2 1 3 6 6 C 1.34638 * 117.00060 * 60.00024 * 5 2 1 7 7 O 1.21516 * 119.99486 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00118 * 179.97438 * 6 5 2 9 9 C 1.48113 * 127.04228 * 359.97438 * 8 6 5 10 10 C 1.54948 * 103.25642 * 219.22759 * 9 8 6 11 11 C 1.54585 * 103.02026 * 322.47780 * 10 9 8 12 12 H 1.08996 * 117.58809 * 243.02802 * 11 10 9 13 13 C 1.53174 * 118.04739 * 85.19177 * 11 10 9 14 14 H 1.08996 * 117.35544 * 160.96192 * 13 11 10 15 15 C 1.52999 * 117.46031 * 16.33853 * 13 11 10 16 16 C 1.50695 * 109.47124 * 174.32311 * 15 13 11 17 17 H 1.08004 * 119.99850 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00070 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00081 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47048 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46932 * 120.00139 * 20 18 16 23 23 H 1.48494 * 109.47371 * 240.00355 * 20 18 16 24 24 C 1.47530 * 127.04321 * 179.97438 * 8 6 5 25 25 H 1.08998 * 117.36993 * 295.06275 * 24 8 6 26 26 H 1.09006 * 109.47356 * 300.00220 * 1 2 3 27 27 H 1.08999 * 109.47130 * 59.99931 * 1 2 3 28 28 H 1.08996 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47004 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47495 * 299.99932 * 3 2 1 31 31 H 1.09006 * 109.46830 * 60.00369 * 3 2 1 32 32 H 1.09005 * 109.46954 * 300.00121 * 4 2 1 33 33 H 1.08999 * 109.46938 * 59.99876 * 4 2 1 34 34 H 1.08994 * 109.47628 * 179.97438 * 4 2 1 35 35 H 1.08992 * 110.66375 * 100.78663 * 9 8 6 36 36 H 1.08995 * 110.66159 * 337.66426 * 9 8 6 37 37 H 1.09002 * 110.73743 * 80.91178 * 10 9 8 38 38 H 1.09001 * 110.73791 * 204.04643 * 10 9 8 39 39 H 1.09005 * 109.46810 * 294.32048 * 15 13 11 40 40 H 1.09001 * 109.47099 * 54.32347 * 15 13 11 41 41 H 0.97000 * 120.00356 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5096 0.5035 8 7 2.0679 -2.6657 2.4167 9 6 2.9209 -2.1703 3.5216 10 6 3.8476 -3.3751 3.8226 11 6 2.9095 -4.5902 3.6401 12 1 2.7175 -5.2152 4.5122 13 6 2.7251 -5.1518 2.2270 14 1 2.3382 -6.1669 2.1381 15 6 3.7474 -4.7409 1.1655 16 6 3.4798 -5.4984 -0.1095 17 1 2.6620 -6.2022 -0.1579 18 6 4.2782 -5.2922 -1.2144 19 7 5.2730 -4.4340 -1.1559 20 14 3.9469 -6.2317 -2.7947 21 1 2.7792 -7.1286 -2.6017 22 1 3.6575 -5.2716 -3.8900 23 1 5.1403 -7.0414 -3.1486 24 6 1.7665 -4.0736 2.7384 25 1 0.7269 -4.3294 2.9430 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1391 34 1 3.1300 -0.7208 -1.2494 35 1 2.3157 -1.9233 4.3937 36 1 3.5042 -1.3076 3.1999 37 1 4.6728 -3.4144 3.1116 38 1 4.2228 -3.3274 4.8449 39 1 3.6645 -3.6705 0.9764 40 1 4.7520 -4.9705 1.5205 41 1 5.8350 -4.2892 -1.9332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260560891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:15 Heat of formation + Delta-G solvation = -47.771116 kcal Electronic energy + Delta-G solvation = -21899.289207 eV Core-core repulsion = 18780.514016 eV Total energy + Delta-G solvation = -3118.775191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42725 -39.10752 -36.11683 -33.94582 -33.16272 -32.08998 -29.96582 -27.98682 -27.21559 -27.00354 -23.82167 -23.30351 -22.02296 -20.02002 -19.27184 -18.35673 -17.29412 -16.40396 -16.09329 -15.73923 -14.91129 -14.77082 -14.28569 -13.93007 -13.72585 -13.34691 -12.70180 -12.59428 -12.31764 -12.12711 -12.03363 -11.85972 -11.76161 -11.63185 -11.48050 -11.14851 -11.06546 -10.89386 -10.72910 -10.69682 -10.39451 -9.96334 -9.80365 -9.48018 -9.46101 -9.17931 -8.81711 -8.27540 -8.02988 -5.91460 -3.90872 2.51803 3.37118 3.44194 3.49086 3.49423 4.04990 4.35960 4.54549 4.98904 4.99880 5.01953 5.18538 5.22658 5.42046 5.48019 5.52046 5.62328 5.65234 5.73829 5.76383 5.83273 5.87321 5.93967 6.01348 6.14109 6.19070 6.26198 6.28318 6.43511 6.54082 6.64586 6.76629 6.85377 6.95364 7.11168 7.70960 7.86873 8.06628 8.08255 8.50833 8.95739 9.12659 9.71300 11.20012 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.008540 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.668904 B = 3277.895545 C = 4592.633029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.138 3.862 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.675 3.325 7 O -0.553 6.553 8 N -0.576 5.576 9 C 0.112 3.888 10 C -0.109 4.109 11 C -0.175 4.175 12 H 0.114 0.886 13 C -0.094 4.094 14 H 0.105 0.895 15 C 0.050 3.950 16 C -0.506 4.506 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.069 3.931 25 H 0.116 0.884 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.026 0.974 40 H 0.020 0.980 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 9.281 8.433 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.101 3.899 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.430 3.570 7 O -0.440 6.440 8 N -0.316 5.316 9 C -0.011 4.011 10 C -0.147 4.147 11 C -0.194 4.194 12 H 0.132 0.868 13 C -0.113 4.113 14 H 0.123 0.877 15 C 0.014 3.986 16 C -0.544 4.544 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.034 4.034 25 H 0.133 0.867 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.900 9.352 7.921 13.602 hybrid contribution -0.170 -0.432 -0.983 1.087 sum -6.069 8.920 6.939 12.827 Atomic orbital electron populations 1.22504 0.94541 1.05030 1.01751 1.21974 0.93868 0.91255 0.82826 1.21829 1.02349 0.92860 1.02460 1.22499 1.02202 1.03835 0.95516 1.86238 1.71951 1.24042 1.46034 1.17308 0.78953 0.79948 0.80783 1.90903 1.41363 1.70001 1.41754 1.46664 1.53420 1.10920 1.20597 1.22603 0.91990 0.97630 0.88875 1.22348 0.98147 0.92207 1.02027 1.23866 0.98321 1.00835 0.96392 0.86833 1.23343 0.99104 0.96410 0.92427 0.87708 1.18694 0.91805 0.97270 0.90880 1.21206 1.13662 1.23121 0.96420 0.92768 1.24947 0.95270 0.95450 0.98637 1.69967 1.18479 1.35307 1.29892 0.86582 0.77994 0.79859 0.83871 1.19764 1.21132 1.21177 1.22540 0.95026 0.80102 1.05756 0.86678 0.92668 0.91524 0.89293 0.91475 0.90482 0.91919 0.88749 0.91892 0.91792 0.91466 0.90066 0.89616 0.90451 0.95608 0.96189 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 8.37 37.16 0.31 -2.35 16 2 C 0.14 2.23 1.13 -90.62 -0.10 2.13 16 3 C -0.14 -1.69 8.85 37.16 0.33 -1.36 16 4 C -0.18 -3.34 8.37 37.15 0.31 -3.03 16 5 O -0.37 -6.93 9.35 -40.32 -0.38 -7.31 16 6 C 0.67 14.32 7.33 54.05 0.40 14.71 16 7 O -0.55 -13.19 12.28 -19.28 -0.24 -13.43 16 8 N -0.58 -11.08 2.21 -167.66 -0.37 -11.45 16 9 C 0.11 1.69 7.10 -2.13 -0.02 1.68 16 10 C -0.11 -1.65 6.53 -24.87 -0.16 -1.82 16 11 C -0.18 -2.84 7.07 -88.92 -0.63 -3.47 16 12 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 13 C -0.09 -1.96 5.66 -90.50 -0.51 -2.47 16 14 H 0.10 2.13 8.00 -51.93 -0.42 1.71 16 15 C 0.05 1.32 3.91 -27.89 -0.11 1.22 16 16 C -0.51 -14.82 9.08 -34.44 -0.31 -15.13 16 17 H 0.05 1.57 7.67 -52.48 -0.40 1.17 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 20 Si 0.89 22.66 29.54 -169.99 -5.02 17.64 16 21 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C 0.07 1.28 6.84 -66.56 -0.45 0.82 16 25 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.09 1.56 5.88 -51.93 -0.31 1.26 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.10 5.88 -51.93 -0.31 1.79 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.21 7.84 -51.93 -0.41 0.80 16 37 H 0.09 1.55 6.90 -51.93 -0.36 1.19 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.74 6.38 -51.93 -0.33 0.41 16 40 H 0.02 0.55 7.87 -51.93 -0.41 0.15 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -33.51 327.98 -8.09 -41.60 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.72 Total: 2.18 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.05 Total: -7.47 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.37 Total: -38.15 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.61 Total: -20.73 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.51 -8.09 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.172 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds