Wall clock time and date at job start Mon Mar 30 2020 06:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47055 * 2 1 4 4 C 1.52994 * 109.47491 * 240.00074 * 2 1 3 5 5 O 1.45204 * 109.46840 * 119.99888 * 2 1 3 6 6 C 1.34638 * 117.00060 * 60.00024 * 5 2 1 7 7 O 1.21516 * 119.99486 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00118 * 179.97438 * 6 5 2 9 9 C 1.48113 * 127.04228 * 359.97438 * 8 6 5 10 10 C 1.54948 * 103.25642 * 219.22759 * 9 8 6 11 11 C 1.54585 * 103.02026 * 322.47780 * 10 9 8 12 12 H 1.08996 * 117.58809 * 243.02802 * 11 10 9 13 13 C 1.53174 * 118.04739 * 85.19177 * 11 10 9 14 14 H 1.08996 * 117.35544 * 160.96192 * 13 11 10 15 15 C 1.52999 * 117.46031 * 16.33853 * 13 11 10 16 16 C 1.50695 * 109.47124 * 174.32311 * 15 13 11 17 17 H 1.08004 * 119.99850 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00070 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00081 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47048 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46932 * 120.00139 * 20 18 16 23 23 H 1.48494 * 109.47371 * 240.00355 * 20 18 16 24 24 C 1.47530 * 127.04321 * 179.97438 * 8 6 5 25 25 H 1.08998 * 117.36993 * 295.06275 * 24 8 6 26 26 H 1.09006 * 109.47356 * 300.00220 * 1 2 3 27 27 H 1.08999 * 109.47130 * 59.99931 * 1 2 3 28 28 H 1.08996 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47004 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47495 * 299.99932 * 3 2 1 31 31 H 1.09006 * 109.46830 * 60.00369 * 3 2 1 32 32 H 1.09005 * 109.46954 * 300.00121 * 4 2 1 33 33 H 1.08999 * 109.46938 * 59.99876 * 4 2 1 34 34 H 1.08994 * 109.47628 * 179.97438 * 4 2 1 35 35 H 1.08992 * 110.66375 * 100.78663 * 9 8 6 36 36 H 1.08995 * 110.66159 * 337.66426 * 9 8 6 37 37 H 1.09002 * 110.73743 * 80.91178 * 10 9 8 38 38 H 1.09001 * 110.73791 * 204.04643 * 10 9 8 39 39 H 1.09005 * 109.46810 * 294.32048 * 15 13 11 40 40 H 1.09001 * 109.47099 * 54.32347 * 15 13 11 41 41 H 0.97000 * 120.00356 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5096 0.5035 8 7 2.0679 -2.6657 2.4167 9 6 2.9209 -2.1703 3.5216 10 6 3.8476 -3.3751 3.8226 11 6 2.9095 -4.5902 3.6401 12 1 2.7175 -5.2152 4.5122 13 6 2.7251 -5.1518 2.2270 14 1 2.3382 -6.1669 2.1381 15 6 3.7474 -4.7409 1.1655 16 6 3.4798 -5.4984 -0.1095 17 1 2.6620 -6.2022 -0.1579 18 6 4.2782 -5.2922 -1.2144 19 7 5.2730 -4.4340 -1.1559 20 14 3.9469 -6.2317 -2.7947 21 1 2.7792 -7.1286 -2.6017 22 1 3.6575 -5.2716 -3.8900 23 1 5.1403 -7.0414 -3.1486 24 6 1.7665 -4.0736 2.7384 25 1 0.7269 -4.3294 2.9430 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1391 34 1 3.1300 -0.7208 -1.2494 35 1 2.3157 -1.9233 4.3937 36 1 3.5042 -1.3076 3.1999 37 1 4.6728 -3.4144 3.1116 38 1 4.2228 -3.3274 4.8449 39 1 3.6645 -3.6705 0.9764 40 1 4.7520 -4.9705 1.5205 41 1 5.8350 -4.2892 -1.9332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260560891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:15 Heat of formation + Delta-G solvation = -67.942170 kcal Electronic energy + Delta-G solvation = -21900.163889 eV Core-core repulsion = 18780.514016 eV Total energy + Delta-G solvation = -3119.649873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91076 -40.54042 -37.64124 -35.56592 -35.00278 -33.79237 -31.39952 -29.97400 -28.38322 -28.29084 -25.57622 -25.03415 -23.49276 -21.41488 -20.71738 -19.90551 -18.91316 -18.40889 -17.53282 -17.35549 -16.55139 -16.36084 -16.07480 -15.29249 -15.12596 -14.67651 -14.48602 -13.95949 -13.89281 -13.65194 -13.49478 -13.32314 -13.09258 -12.94941 -12.88310 -12.84740 -12.70071 -12.50462 -12.44554 -12.23446 -12.17234 -11.57698 -11.37331 -11.28136 -11.08771 -11.03210 -10.56622 -10.45223 -9.54844 -8.20977 -6.28359 1.10970 1.31021 1.33054 1.45337 1.90568 2.36954 2.64202 3.00348 3.12689 3.67766 3.76563 3.79493 3.86079 3.94208 3.98636 4.25681 4.41370 4.45935 4.49287 4.58470 4.67938 4.72654 4.74029 4.80133 4.81653 4.87247 4.97462 5.01722 5.09784 5.12354 5.29115 5.33163 5.36609 5.47138 5.52680 5.55056 5.69045 5.83974 6.26710 6.58219 6.84947 7.38018 7.39796 8.90537 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.008540 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.668904 B = 3277.895545 C = 4592.633029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.125 3.875 3 C -0.129 4.129 4 C -0.178 4.178 5 O -0.370 6.370 6 C 0.663 3.337 7 O -0.592 6.592 8 N -0.585 5.585 9 C 0.109 3.891 10 C -0.109 4.109 11 C -0.129 4.129 12 H 0.162 0.838 13 C -0.138 4.138 14 H 0.106 0.894 15 C 0.067 3.933 16 C -0.530 4.530 17 H 0.049 0.951 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.060 3.940 25 H 0.133 0.867 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.127 0.873 39 H -0.007 1.007 40 H -0.008 1.008 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 10.239 9.990 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.089 3.911 3 C -0.186 4.186 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.419 3.581 7 O -0.482 6.482 8 N -0.325 5.325 9 C -0.012 4.012 10 C -0.147 4.147 11 C -0.147 4.147 12 H 0.179 0.821 13 C -0.157 4.157 14 H 0.124 0.876 15 C 0.030 3.970 16 C -0.568 4.568 17 H 0.067 0.933 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.779 3.221 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.043 4.043 25 H 0.150 0.850 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.145 0.855 39 H 0.012 0.988 40 H 0.010 0.990 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.714 10.315 9.511 15.554 hybrid contribution 0.126 -0.703 -1.492 1.654 sum -6.588 9.612 8.018 14.145 Atomic orbital electron populations 1.22417 0.93182 1.03431 1.03968 1.22418 0.95155 0.92723 0.80852 1.21853 1.01988 0.89976 1.04818 1.22431 1.00562 1.01930 0.98636 1.86248 1.72007 1.23036 1.47178 1.17670 0.78864 0.80615 0.80974 1.90876 1.43186 1.70932 1.43234 1.46978 1.53359 1.11240 1.20873 1.22898 0.92031 0.97410 0.88814 1.22437 0.96765 0.91718 1.03779 1.24060 0.96167 0.99705 0.94760 0.82097 1.23084 1.00223 0.97545 0.94866 0.87607 1.18334 0.92080 0.94799 0.91743 1.21642 1.13504 1.23419 0.98206 0.93284 1.25834 0.95047 0.96399 1.02204 1.70087 1.19335 1.36583 1.30958 0.85563 0.78493 0.78657 0.79388 1.19036 1.20927 1.19565 1.22760 0.96299 0.79310 1.05943 0.85006 0.90896 0.88765 0.92737 0.92102 0.87578 0.90050 0.93429 0.88678 0.94091 0.87374 0.90369 0.93495 0.85529 0.98845 0.98985 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.93 8.37 71.98 0.60 -4.33 16 2 C 0.12 4.01 1.13 -10.79 -0.01 4.00 16 3 C -0.13 -2.89 8.85 71.98 0.64 -2.25 16 4 C -0.18 -6.75 8.37 71.98 0.60 -6.15 16 5 O -0.37 -14.19 9.35 -55.47 -0.52 -14.71 16 6 C 0.66 29.09 7.33 129.79 0.95 30.04 16 7 O -0.59 -29.85 12.28 19.79 0.24 -29.60 16 8 N -0.58 -22.52 2.21 -914.77 -2.02 -24.55 16 9 C 0.11 3.11 7.10 86.74 0.62 3.72 16 10 C -0.11 -3.07 6.53 31.80 0.21 -2.86 16 11 C -0.13 -3.85 7.07 -9.69 -0.07 -3.92 16 12 H 0.16 3.39 8.14 -2.39 -0.02 3.37 16 13 C -0.14 -5.87 5.66 -10.71 -0.06 -5.93 16 14 H 0.11 4.38 8.00 -2.39 -0.02 4.37 16 15 C 0.07 3.74 3.91 29.85 0.12 3.86 16 16 C -0.53 -32.49 9.08 25.60 0.23 -32.25 16 17 H 0.05 2.97 7.67 -2.91 -0.02 2.94 16 18 C 0.00 0.15 5.46 84.65 0.46 0.62 16 19 N -0.93 -59.23 13.29 21.45 0.28 -58.94 16 20 Si 0.95 47.80 29.54 68.60 2.03 49.82 16 21 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.28 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 24 C 0.06 2.19 6.84 45.32 0.31 2.50 16 25 H 0.13 4.33 8.14 -2.39 -0.02 4.31 16 26 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.96 5.88 -2.39 -0.01 1.95 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.05 2.26 5.88 -2.38 -0.01 2.24 16 33 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 2.26 7.84 -2.39 -0.02 2.24 16 37 H 0.05 1.71 6.90 -2.39 -0.02 1.69 16 38 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 39 H -0.01 -0.41 6.38 -2.38 -0.02 -0.43 16 40 H -0.01 -0.48 7.87 -2.39 -0.02 -0.49 16 41 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -79.56 327.98 5.61 -73.96 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.00 Total: 16.97 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.60 Total: -12.95 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -1.74 Total: -83.49 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.28 Total: -44.31 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.82 kcal Total: -79.56 5.61 -73.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.016 kcal (2) G-P(sol) polarization free energy of solvation -79.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds