Wall clock time and date at job start Mon Mar 30 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47145 * 2 1 4 4 C 1.52999 * 109.47182 * 240.00153 * 2 1 3 5 5 O 1.45198 * 109.47271 * 120.00060 * 2 1 3 6 6 C 1.34635 * 117.00035 * 60.00304 * 5 2 1 7 7 O 1.21514 * 120.00134 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00099 * 180.02562 * 6 5 2 9 9 C 1.49870 * 127.93766 * 0.45904 * 8 6 5 10 10 C 1.54936 * 103.40488 * 218.87524 * 9 8 6 11 11 C 1.54574 * 102.86084 * 322.44946 * 10 9 8 12 12 H 1.09003 * 118.12450 * 242.38597 * 11 10 9 13 13 C 1.52936 * 118.20285 * 85.42422 * 11 10 9 14 14 H 1.09000 * 117.43181 * 16.01028 * 13 11 10 15 15 C 1.53001 * 117.45816 * 160.76957 * 13 11 10 16 16 C 1.50694 * 109.47168 * 185.49648 * 15 13 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47529 * 127.04538 * 179.97438 * 8 6 5 25 25 H 1.09000 * 117.37246 * 296.10927 * 24 8 6 26 26 H 1.09008 * 109.47136 * 299.99868 * 1 2 3 27 27 H 1.09001 * 109.47269 * 60.00021 * 1 2 3 28 28 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47383 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47020 * 300.00131 * 3 2 1 31 31 H 1.09000 * 109.47280 * 59.99847 * 3 2 1 32 32 H 1.09002 * 109.47306 * 300.00087 * 4 2 1 33 33 H 1.09001 * 109.47161 * 59.99759 * 4 2 1 34 34 H 1.08999 * 109.47512 * 179.97438 * 4 2 1 35 35 H 1.09001 * 110.69511 * 100.33502 * 9 8 6 36 36 H 1.09002 * 110.62609 * 337.38600 * 9 8 6 37 37 H 1.08999 * 110.73754 * 204.10508 * 10 9 8 38 38 H 1.09002 * 110.73433 * 80.78818 * 10 9 8 39 39 H 1.09007 * 109.46922 * 65.49350 * 15 13 11 40 40 H 1.09003 * 109.46836 * 305.50105 * 15 13 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0673 -2.6654 2.4170 9 6 2.9200 -2.1820 3.5507 10 6 3.8383 -3.3932 3.8513 11 6 2.8948 -4.5999 3.6447 12 1 2.6905 -5.2447 4.4995 13 6 2.7259 -5.1512 2.2281 14 1 3.4639 -4.8548 1.4827 15 6 2.1785 -6.5727 2.0849 16 6 2.2126 -6.9803 0.6345 17 1 2.5876 -6.2944 -0.1106 18 6 1.7650 -8.2292 0.2587 19 7 1.3088 -9.0647 1.1661 20 14 1.8066 -8.7342 -1.5393 21 1 1.2753 -10.1140 -1.6783 22 1 0.9717 -7.7992 -2.3355 23 1 3.2063 -8.6911 -2.0332 24 6 1.7659 -4.0733 2.7388 25 1 0.7238 -4.3327 2.9254 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 2.3063 -1.9400 4.4184 36 1 3.5105 -1.3180 3.2458 37 1 4.2000 -3.3576 4.8789 38 1 4.6711 -3.4298 3.1489 39 1 1.1509 -6.6046 2.4473 40 1 2.7914 -7.2587 2.6697 41 1 0.9935 -9.9431 0.9016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260560896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:18 Heat of formation + Delta-G solvation = -52.326601 kcal Electronic energy + Delta-G solvation = -21078.692938 eV Core-core repulsion = 17959.720207 eV Total energy + Delta-G solvation = -3118.972731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58108 -39.17375 -36.40701 -34.23646 -33.49780 -32.14193 -30.30102 -27.79197 -27.44389 -27.33916 -23.99750 -23.49708 -21.62453 -20.05038 -19.64738 -19.08643 -17.66433 -16.41620 -16.18183 -15.94616 -15.05991 -14.89269 -14.38013 -14.18741 -13.71182 -13.41744 -12.91426 -12.63555 -12.54833 -12.45868 -12.21648 -12.10026 -11.88195 -11.81894 -11.66183 -11.38895 -11.23662 -11.15447 -10.96263 -10.72499 -10.46063 -10.26799 -9.90680 -9.71148 -9.63468 -9.33095 -8.86060 -8.41510 -8.13626 -5.96259 -3.96945 2.24871 3.16966 3.39214 3.42238 3.46972 3.89827 4.17261 4.51451 4.71918 4.74886 4.79602 4.90321 5.12491 5.29864 5.38053 5.39920 5.43698 5.49690 5.52643 5.58478 5.65012 5.69988 5.73714 5.77914 5.87640 5.92625 6.03393 6.11243 6.25791 6.34321 6.42414 6.53288 6.68973 6.73490 6.99327 7.65647 7.73518 7.84025 8.01696 8.44699 8.66704 9.07087 9.66299 11.15121 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.005499 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.756644 B = 5090.786010 C = 6253.735747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.185 4.185 5 O -0.368 6.368 6 C 0.667 3.333 7 O -0.554 6.554 8 N -0.587 5.587 9 C 0.110 3.890 10 C -0.106 4.106 11 C -0.175 4.175 12 H 0.121 0.879 13 C -0.083 4.083 14 H 0.092 0.908 15 C 0.049 3.951 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.287 1.287 22 H -0.276 1.276 23 H -0.277 1.277 24 C 0.067 3.933 25 H 0.123 0.877 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.028 0.972 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 19.291 3.468 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.242 4.242 5 O -0.283 6.283 6 C 0.422 3.578 7 O -0.442 6.442 8 N -0.327 5.327 9 C -0.012 4.012 10 C -0.144 4.144 11 C -0.194 4.194 12 H 0.138 0.862 13 C -0.103 4.103 14 H 0.111 0.889 15 C 0.012 3.988 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.035 4.035 25 H 0.140 0.860 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.046 0.954 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.576 19.112 3.078 19.528 hybrid contribution -0.118 -0.249 -1.005 1.043 sum 2.457 18.863 2.072 19.135 Atomic orbital electron populations 1.22518 0.94169 1.05306 1.02063 1.21999 0.94298 0.91292 0.82483 1.21837 1.02102 0.92777 1.02818 1.22528 1.01482 1.03955 0.96239 1.86259 1.71903 1.23989 1.46197 1.17423 0.79137 0.80029 0.81162 1.90952 1.40860 1.70072 1.42272 1.47383 1.53682 1.11492 1.20170 1.22949 0.92241 0.97387 0.88600 1.22331 0.97347 0.92602 1.02112 1.23871 0.98077 1.00150 0.97292 0.86154 1.23331 0.98375 0.96661 0.91891 0.88941 1.18762 0.96034 0.86501 0.97483 1.21139 1.41686 0.99387 0.92809 0.92671 1.24977 0.95347 0.96597 0.97432 1.69945 1.42954 1.07774 1.33071 0.86643 0.78384 0.77449 0.85490 1.21306 1.20176 1.20282 1.22738 0.96090 0.78623 1.06039 0.85987 0.92413 0.91349 0.89137 0.91618 0.90329 0.91683 0.88972 0.91378 0.92289 0.90854 0.90144 0.89833 0.90797 0.95928 0.95375 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 2 C 0.14 1.77 1.13 -90.62 -0.10 1.67 16 3 C -0.14 -1.28 8.85 37.16 0.33 -0.96 16 4 C -0.18 -2.50 8.37 37.16 0.31 -2.19 16 5 O -0.37 -5.72 9.47 -40.31 -0.38 -6.11 16 6 C 0.67 12.35 8.01 54.05 0.43 12.78 16 7 O -0.55 -11.95 12.28 -19.28 -0.24 -12.19 16 8 N -0.59 -10.11 3.30 -166.45 -0.55 -10.66 16 9 C 0.11 1.40 7.19 -1.14 -0.01 1.40 16 10 C -0.11 -1.34 6.86 -24.88 -0.17 -1.51 16 11 C -0.18 -2.84 6.77 -89.29 -0.60 -3.45 16 12 H 0.12 1.83 8.14 -51.93 -0.42 1.40 16 13 C -0.08 -1.76 5.40 -90.60 -0.49 -2.25 16 14 H 0.09 2.07 8.00 -51.93 -0.42 1.65 16 15 C 0.05 1.27 5.25 -27.89 -0.15 1.13 16 16 C -0.51 -14.88 9.08 -34.44 -0.31 -15.19 16 17 H 0.06 1.61 7.67 -52.49 -0.40 1.20 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 20 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.07 1.27 6.46 -66.78 -0.43 0.84 16 25 H 0.12 2.39 8.11 -51.93 -0.42 1.97 16 26 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.58 5.88 -51.93 -0.31 1.28 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.92 7.94 -51.93 -0.41 0.51 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.61 7.93 -51.92 -0.41 0.20 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -32.66 333.83 -8.28 -40.95 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.88 Total: 0.21 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.98 Total: -8.19 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.19 Total: -37.10 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.62 Total: -18.30 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.66 -8.28 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.379 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds