Wall clock time and date at job start Mon Mar 30 2020 06:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47145 * 2 1 4 4 C 1.52999 * 109.47182 * 240.00153 * 2 1 3 5 5 O 1.45198 * 109.47271 * 120.00060 * 2 1 3 6 6 C 1.34635 * 117.00035 * 60.00304 * 5 2 1 7 7 O 1.21514 * 120.00134 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00099 * 180.02562 * 6 5 2 9 9 C 1.49870 * 127.93766 * 0.45904 * 8 6 5 10 10 C 1.54936 * 103.40488 * 218.87524 * 9 8 6 11 11 C 1.54574 * 102.86084 * 322.44946 * 10 9 8 12 12 H 1.09003 * 118.12450 * 242.38597 * 11 10 9 13 13 C 1.52936 * 118.20285 * 85.42422 * 11 10 9 14 14 H 1.09000 * 117.43181 * 16.01028 * 13 11 10 15 15 C 1.53001 * 117.45816 * 160.76957 * 13 11 10 16 16 C 1.50694 * 109.47168 * 185.49648 * 15 13 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47529 * 127.04538 * 179.97438 * 8 6 5 25 25 H 1.09000 * 117.37246 * 296.10927 * 24 8 6 26 26 H 1.09008 * 109.47136 * 299.99868 * 1 2 3 27 27 H 1.09001 * 109.47269 * 60.00021 * 1 2 3 28 28 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47383 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47020 * 300.00131 * 3 2 1 31 31 H 1.09000 * 109.47280 * 59.99847 * 3 2 1 32 32 H 1.09002 * 109.47306 * 300.00087 * 4 2 1 33 33 H 1.09001 * 109.47161 * 59.99759 * 4 2 1 34 34 H 1.08999 * 109.47512 * 179.97438 * 4 2 1 35 35 H 1.09001 * 110.69511 * 100.33502 * 9 8 6 36 36 H 1.09002 * 110.62609 * 337.38600 * 9 8 6 37 37 H 1.08999 * 110.73754 * 204.10508 * 10 9 8 38 38 H 1.09002 * 110.73433 * 80.78818 * 10 9 8 39 39 H 1.09007 * 109.46922 * 65.49350 * 15 13 11 40 40 H 1.09003 * 109.46836 * 305.50105 * 15 13 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0673 -2.6654 2.4170 9 6 2.9200 -2.1820 3.5507 10 6 3.8383 -3.3932 3.8513 11 6 2.8948 -4.5999 3.6447 12 1 2.6905 -5.2447 4.4995 13 6 2.7259 -5.1512 2.2281 14 1 3.4639 -4.8548 1.4827 15 6 2.1785 -6.5727 2.0849 16 6 2.2126 -6.9803 0.6345 17 1 2.5876 -6.2944 -0.1106 18 6 1.7650 -8.2292 0.2587 19 7 1.3088 -9.0647 1.1661 20 14 1.8066 -8.7342 -1.5393 21 1 1.2753 -10.1140 -1.6783 22 1 0.9717 -7.7992 -2.3355 23 1 3.2063 -8.6911 -2.0332 24 6 1.7659 -4.0733 2.7388 25 1 0.7238 -4.3327 2.9254 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 2.3063 -1.9400 4.4184 36 1 3.5105 -1.3180 3.2458 37 1 4.2000 -3.3576 4.8789 38 1 4.6711 -3.4298 3.1489 39 1 1.1509 -6.6046 2.4473 40 1 2.7914 -7.2587 2.6697 41 1 0.9935 -9.9431 0.9016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260560896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:17 Heat of formation + Delta-G solvation = -72.093882 kcal Electronic energy + Delta-G solvation = -21079.550112 eV Core-core repulsion = 17959.720207 eV Total energy + Delta-G solvation = -3119.829905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89257 -40.50037 -37.74081 -35.77905 -35.05729 -33.87806 -31.61968 -29.69639 -28.39141 -28.28731 -25.53620 -25.19126 -22.94118 -21.52340 -21.08282 -20.37983 -19.02622 -18.37375 -17.59087 -17.30266 -16.65385 -16.28123 -15.95774 -15.30112 -14.91066 -14.67022 -14.45334 -14.26112 -13.82595 -13.69190 -13.44008 -13.32774 -13.13012 -12.92901 -12.87711 -12.86665 -12.80299 -12.60348 -12.47614 -12.27317 -12.19156 -11.57948 -11.48718 -11.40793 -11.15595 -11.09765 -10.62839 -10.52882 -9.65244 -8.23176 -6.32085 0.98850 1.34499 1.38220 1.46091 1.76318 2.37422 2.58638 2.90901 3.09975 3.56945 3.75472 3.78365 3.82849 3.93677 3.98043 4.22315 4.33498 4.38990 4.48005 4.58871 4.66160 4.68626 4.73872 4.80747 4.83157 4.85983 4.87710 5.03363 5.06359 5.11634 5.22995 5.27257 5.33905 5.41894 5.43932 5.48833 5.61688 5.78033 6.23017 6.49823 6.79594 7.29397 7.35387 8.88076 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.005499 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.756644 B = 5090.786010 C = 6253.735747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.129 4.129 4 C -0.182 4.182 5 O -0.361 6.361 6 C 0.661 3.339 7 O -0.597 6.597 8 N -0.591 5.591 9 C 0.109 3.891 10 C -0.097 4.097 11 C -0.131 4.131 12 H 0.137 0.863 13 C -0.117 4.117 14 H 0.074 0.926 15 C 0.059 3.941 16 C -0.538 4.538 17 H 0.043 0.957 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.958 3.042 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.265 1.265 24 C 0.059 3.941 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.070 0.930 39 H -0.002 1.002 40 H 0.011 0.989 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.115 21.735 4.051 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.186 4.186 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.416 3.584 7 O -0.487 6.487 8 N -0.331 5.331 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.150 4.150 12 H 0.155 0.845 13 C -0.137 4.137 14 H 0.092 0.908 15 C 0.022 3.978 16 C -0.576 4.576 17 H 0.062 0.938 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.782 3.218 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.045 4.045 25 H 0.123 0.877 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.016 0.984 40 H 0.029 0.971 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.792 21.586 3.688 22.224 hybrid contribution -0.511 -0.978 -1.204 1.633 sum 3.281 20.607 2.484 21.014 Atomic orbital electron populations 1.22469 0.94207 1.03186 1.03813 1.22462 0.94584 0.93012 0.81264 1.21854 1.02464 0.89722 1.04589 1.22488 1.01587 1.01834 0.98043 1.86275 1.71639 1.22241 1.47393 1.17696 0.78786 0.80858 0.81026 1.90939 1.42715 1.71176 1.43915 1.47559 1.53907 1.10703 1.20958 1.23276 0.92128 0.97879 0.87775 1.22452 0.96238 0.90008 1.04743 1.24016 0.96843 0.99622 0.94483 0.84483 1.22876 1.00061 0.94939 0.95808 0.90756 1.18500 0.94413 0.89412 0.95499 1.21505 1.42044 0.99724 0.94317 0.93825 1.25835 0.94751 0.96529 1.02085 1.70047 1.43399 1.08174 1.35141 0.85617 0.78893 0.77403 0.79858 1.19890 1.20316 1.19031 1.22567 0.95792 0.79371 1.06745 0.87720 0.91443 0.88795 0.93095 0.91054 0.87787 0.90668 0.93313 0.88713 0.92000 0.88286 0.88166 0.85364 0.91094 0.98408 0.97083 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 8.37 71.98 0.60 -3.85 16 2 C 0.12 3.04 1.13 -10.79 -0.01 3.03 16 3 C -0.13 -1.98 8.85 71.98 0.64 -1.34 16 4 C -0.18 -4.89 8.37 71.98 0.60 -4.28 16 5 O -0.36 -10.90 9.47 -55.44 -0.53 -11.42 16 6 C 0.66 24.89 8.01 129.79 1.04 25.93 16 7 O -0.60 -27.30 12.28 19.80 0.24 -27.05 16 8 N -0.59 -20.18 3.30 -910.93 -3.01 -23.19 16 9 C 0.11 2.43 7.19 86.38 0.62 3.06 16 10 C -0.10 -2.11 6.86 31.79 0.22 -1.89 16 11 C -0.13 -4.09 6.77 -9.93 -0.07 -4.16 16 12 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 13 C -0.12 -5.18 5.40 -10.78 -0.06 -5.23 16 14 H 0.07 3.51 8.00 -2.39 -0.02 3.49 16 15 C 0.06 3.22 5.25 29.85 0.16 3.38 16 16 C -0.54 -32.80 9.08 25.60 0.23 -32.56 16 17 H 0.04 2.68 7.67 -2.91 -0.02 2.66 16 18 C 0.01 0.37 5.46 84.66 0.46 0.83 16 19 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 20 Si 0.96 47.01 29.54 68.60 2.03 49.04 16 21 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 C 0.06 2.26 6.46 45.18 0.29 2.55 16 25 H 0.11 4.35 8.11 -2.39 -0.02 4.33 16 26 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.70 5.88 -2.38 -0.01 1.68 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.76 5.88 -2.39 -0.01 1.74 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.90 7.94 -2.39 -0.02 1.88 16 37 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 39 H 0.00 -0.14 7.93 -2.38 -0.02 -0.16 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -76.29 333.83 4.74 -71.56 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.99 Total: 12.99 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.73 Total: -14.55 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -2.73 Total: -80.56 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.28 Total: -38.47 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -76.29 4.74 -71.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260560896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.535 kcal (2) G-P(sol) polarization free energy of solvation -76.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds