Wall clock time and date at job start Mon Mar 30 2020 06:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46547 * 2 1 4 4 C 1.52996 * 109.47112 * 240.00050 * 2 1 3 5 5 O 1.45195 * 109.47079 * 119.99725 * 2 1 3 6 6 C 1.34641 * 116.99636 * 60.00452 * 5 2 1 7 7 O 1.21506 * 120.00315 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99553 * 179.97438 * 6 5 2 9 9 C 1.46502 * 119.99775 * 179.97438 * 8 6 5 10 10 H 1.08995 * 115.52528 * 9.50652 * 9 8 6 11 11 C 1.53006 * 117.46039 * 154.99869 * 9 8 6 12 12 H 1.08999 * 119.29369 * 356.27409 * 11 9 8 13 13 C 1.53002 * 117.44119 * 224.03430 * 9 8 6 14 14 H 1.08999 * 119.30195 * 3.70293 * 13 9 8 15 15 C 1.54262 * 118.19570 * 158.77871 * 13 9 8 16 16 C 1.54888 * 104.19767 * 87.79132 * 15 13 9 17 17 C 1.54261 * 118.20054 * 201.19320 * 11 9 8 18 18 H 1.09003 * 110.48317 * 30.88904 * 17 11 9 19 19 C 1.50693 * 110.48738 * 153.53453 * 17 11 9 20 20 H 1.07993 * 120.00131 * 359.97438 * 19 17 11 21 21 C 1.37876 * 119.99932 * 179.97438 * 19 17 11 22 22 N 1.31513 * 120.00408 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00085 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46941 * 90.00251 * 23 21 19 25 25 H 1.48497 * 109.47165 * 210.00030 * 23 21 19 26 26 H 1.48499 * 109.47318 * 330.00453 * 23 21 19 27 27 H 1.08996 * 109.47013 * 299.99548 * 1 2 3 28 28 H 1.08994 * 109.46811 * 60.00045 * 1 2 3 29 29 H 1.09000 * 109.46448 * 180.02562 * 1 2 3 30 30 H 1.09013 * 109.46839 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47556 * 299.99719 * 3 2 1 32 32 H 1.08996 * 109.47095 * 60.00502 * 3 2 1 33 33 H 1.08996 * 109.47476 * 299.99865 * 4 2 1 34 34 H 1.09003 * 109.47180 * 60.00165 * 4 2 1 35 35 H 1.09007 * 109.46993 * 179.97438 * 4 2 1 36 36 H 0.96999 * 120.00463 * 0.02562 * 8 6 5 37 37 H 1.09000 * 110.48666 * 206.46892 * 15 13 9 38 38 H 1.09004 * 110.49166 * 328.98042 * 15 13 9 39 39 H 1.09006 * 110.75668 * 80.37108 * 16 15 13 40 40 H 1.09005 * 110.75476 * 203.55733 * 16 15 13 41 41 H 0.96997 * 120.00694 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6656 2.4166 9 6 1.6741 -4.0668 2.5831 10 1 1.1841 -4.5223 1.7226 11 6 2.5820 -4.9589 3.4322 12 1 3.5108 -4.5500 3.8297 13 6 1.2135 -4.5093 3.9735 14 1 1.1343 -3.7692 4.7698 15 6 0.3444 -5.7790 4.0836 16 6 1.3709 -6.9333 4.1976 17 6 2.4967 -6.4862 3.2323 18 1 2.2313 -6.7217 2.2016 19 6 3.8019 -7.1406 3.6051 20 1 4.6276 -6.5384 3.9540 21 6 3.9419 -8.5082 3.5006 22 7 2.9366 -9.2416 3.0751 23 14 5.5601 -9.3194 3.9620 24 1 5.5396 -9.6811 5.4022 25 1 5.7494 -10.5458 3.1463 26 1 6.6779 -8.3763 3.7044 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1301 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 2.6277 -2.2368 3.0829 37 1 -0.2822 -5.7363 4.9744 38 1 -0.2702 -5.8992 3.1914 39 1 1.7469 -7.0165 5.2174 40 1 0.9303 -7.8756 3.8718 41 1 3.0352 -10.2038 3.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:14 Heat of formation + Delta-G solvation = -69.547797 kcal Electronic energy + Delta-G solvation = -20660.154806 eV Core-core repulsion = 17540.435307 eV Total energy + Delta-G solvation = -3119.719498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65353 -38.90853 -36.88403 -34.41254 -33.69823 -32.44444 -29.49425 -27.99568 -27.52821 -27.44508 -23.76033 -23.23953 -20.93718 -20.20525 -19.43678 -18.74362 -17.89938 -16.93241 -16.29175 -15.98018 -15.18985 -14.64664 -14.48625 -14.39219 -13.68303 -13.60313 -13.09252 -12.63024 -12.47839 -12.28807 -12.15951 -11.98214 -11.93545 -11.74807 -11.38053 -11.34841 -11.05461 -10.78548 -10.61708 -10.45185 -10.39291 -10.24851 -9.94822 -9.74023 -9.56169 -9.00641 -8.72198 -8.38790 -8.25122 -6.01150 -4.03473 2.25401 2.97396 3.31144 3.38197 3.41070 4.20117 4.44182 4.45893 4.62465 4.66602 4.80999 5.27347 5.32961 5.35597 5.41912 5.47142 5.52465 5.56564 5.59451 5.64775 5.77569 5.85554 5.89138 6.07919 6.22810 6.28685 6.39455 6.41553 6.54762 6.62452 6.71945 6.84454 6.91901 7.21691 7.32734 7.64939 7.67347 7.83579 8.00940 8.42482 8.57005 8.97531 9.60103 11.08640 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.003924 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.684795 B = 7133.622707 C = 7559.189209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.368 6.368 6 C 0.652 3.348 7 O -0.568 6.568 8 N -0.677 5.677 9 C 0.099 3.901 10 H 0.133 0.867 11 C -0.133 4.133 12 H 0.101 0.899 13 C -0.184 4.184 14 H 0.097 0.903 15 C -0.096 4.096 16 C -0.099 4.099 17 C 0.077 3.923 18 H 0.037 0.963 19 C -0.511 4.511 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.890 5.890 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.403 0.597 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 17.640 -3.415 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.284 6.284 6 C 0.405 3.595 7 O -0.457 6.457 8 N -0.332 5.332 9 C -0.004 4.004 10 H 0.150 0.850 11 C -0.152 4.152 12 H 0.119 0.881 13 C -0.204 4.204 14 H 0.115 0.885 15 C -0.134 4.134 16 C -0.137 4.137 17 C 0.058 3.942 18 H 0.055 0.945 19 C -0.549 4.549 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.528 5.528 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.200 1.200 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.238 0.762 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.064 17.262 -3.937 18.166 hybrid contribution 1.141 -0.180 0.626 1.314 sum -2.923 17.083 -3.311 17.644 Atomic orbital electron populations 1.22518 0.94104 1.05244 1.02199 1.22018 0.94316 0.91388 0.82346 1.21854 1.02229 0.92707 1.02911 1.22525 1.01607 1.03749 0.96286 1.86284 1.71823 1.23934 1.46325 1.18006 0.78913 0.80218 0.82378 1.90881 1.41253 1.70271 1.43294 1.44130 1.54130 1.11827 1.23079 1.21977 1.04087 0.78454 0.95927 0.84962 1.24248 0.92784 0.97878 1.00283 0.88107 1.23824 1.00481 1.00053 0.96007 0.88451 1.22071 0.97512 0.93689 1.00141 1.22613 0.94868 0.96171 1.00029 1.19126 0.94605 0.84621 0.95818 0.94543 1.21087 0.97758 0.91862 1.44237 0.92622 1.24959 0.96389 0.97471 0.95120 1.69948 1.30664 1.05670 1.46509 0.86621 0.84199 0.78977 0.78343 1.20749 1.21282 1.19968 0.92308 0.91318 0.89182 0.91510 0.90278 0.91594 0.89130 0.91327 0.92163 0.76246 0.92868 0.92422 0.93071 0.91058 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 2 C 0.14 1.58 1.13 -90.62 -0.10 1.47 16 3 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 4 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 5 O -0.37 -5.18 9.94 -40.33 -0.40 -5.58 16 6 C 0.65 10.63 8.06 54.06 0.44 11.06 16 7 O -0.57 -10.50 11.45 -19.28 -0.22 -10.72 16 8 N -0.68 -10.58 5.57 -58.72 -0.33 -10.91 16 9 C 0.10 1.80 5.98 -67.92 -0.41 1.39 16 10 H 0.13 2.64 7.40 -51.93 -0.38 2.26 16 11 C -0.13 -2.65 6.26 -89.50 -0.56 -3.21 16 12 H 0.10 1.97 7.91 -51.93 -0.41 1.56 16 13 C -0.18 -3.25 6.86 -89.50 -0.61 -3.86 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 15 C -0.10 -1.79 6.62 -25.07 -0.17 -1.96 16 16 C -0.10 -2.23 5.74 -24.74 -0.14 -2.37 16 17 C 0.08 1.87 2.52 -90.12 -0.23 1.64 16 18 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 19 C -0.51 -13.75 8.54 -34.44 -0.29 -14.04 16 20 H 0.06 1.47 7.61 -52.49 -0.40 1.07 16 21 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 22 N -0.89 -25.24 12.29 55.43 0.68 -24.56 16 23 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 5.33 8.94 -40.82 -0.36 4.97 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.18 8.05 -51.93 -0.42 0.77 16 40 H 0.07 1.75 7.56 -51.93 -0.39 1.36 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -29.13 329.87 -8.30 -37.44 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.77 Total: 5.99 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.22 Total: -12.70 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.35 Total: -35.47 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.62 Total: -16.30 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.13 -8.30 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.110 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds