Wall clock time and date at job start Mon Mar 30 2020 06:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46547 * 2 1 4 4 C 1.52996 * 109.47112 * 240.00050 * 2 1 3 5 5 O 1.45195 * 109.47079 * 119.99725 * 2 1 3 6 6 C 1.34641 * 116.99636 * 60.00452 * 5 2 1 7 7 O 1.21506 * 120.00315 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99553 * 179.97438 * 6 5 2 9 9 C 1.46502 * 119.99775 * 179.97438 * 8 6 5 10 10 H 1.08995 * 115.52528 * 9.50652 * 9 8 6 11 11 C 1.53006 * 117.46039 * 154.99869 * 9 8 6 12 12 H 1.08999 * 119.29369 * 356.27409 * 11 9 8 13 13 C 1.53002 * 117.44119 * 224.03430 * 9 8 6 14 14 H 1.08999 * 119.30195 * 3.70293 * 13 9 8 15 15 C 1.54262 * 118.19570 * 158.77871 * 13 9 8 16 16 C 1.54888 * 104.19767 * 87.79132 * 15 13 9 17 17 C 1.54261 * 118.20054 * 201.19320 * 11 9 8 18 18 H 1.09003 * 110.48317 * 30.88904 * 17 11 9 19 19 C 1.50693 * 110.48738 * 153.53453 * 17 11 9 20 20 H 1.07993 * 120.00131 * 359.97438 * 19 17 11 21 21 C 1.37876 * 119.99932 * 179.97438 * 19 17 11 22 22 N 1.31513 * 120.00408 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00085 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46941 * 90.00251 * 23 21 19 25 25 H 1.48497 * 109.47165 * 210.00030 * 23 21 19 26 26 H 1.48499 * 109.47318 * 330.00453 * 23 21 19 27 27 H 1.08996 * 109.47013 * 299.99548 * 1 2 3 28 28 H 1.08994 * 109.46811 * 60.00045 * 1 2 3 29 29 H 1.09000 * 109.46448 * 180.02562 * 1 2 3 30 30 H 1.09013 * 109.46839 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47556 * 299.99719 * 3 2 1 32 32 H 1.08996 * 109.47095 * 60.00502 * 3 2 1 33 33 H 1.08996 * 109.47476 * 299.99865 * 4 2 1 34 34 H 1.09003 * 109.47180 * 60.00165 * 4 2 1 35 35 H 1.09007 * 109.46993 * 179.97438 * 4 2 1 36 36 H 0.96999 * 120.00463 * 0.02562 * 8 6 5 37 37 H 1.09000 * 110.48666 * 206.46892 * 15 13 9 38 38 H 1.09004 * 110.49166 * 328.98042 * 15 13 9 39 39 H 1.09006 * 110.75668 * 80.37108 * 16 15 13 40 40 H 1.09005 * 110.75476 * 203.55733 * 16 15 13 41 41 H 0.96997 * 120.00694 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6656 2.4166 9 6 1.6741 -4.0668 2.5831 10 1 1.1841 -4.5223 1.7226 11 6 2.5820 -4.9589 3.4322 12 1 3.5108 -4.5500 3.8297 13 6 1.2135 -4.5093 3.9735 14 1 1.1343 -3.7692 4.7698 15 6 0.3444 -5.7790 4.0836 16 6 1.3709 -6.9333 4.1976 17 6 2.4967 -6.4862 3.2323 18 1 2.2313 -6.7217 2.2016 19 6 3.8019 -7.1406 3.6051 20 1 4.6276 -6.5384 3.9540 21 6 3.9419 -8.5082 3.5006 22 7 2.9366 -9.2416 3.0751 23 14 5.5601 -9.3194 3.9620 24 1 5.5396 -9.6811 5.4022 25 1 5.7494 -10.5458 3.1463 26 1 6.6779 -8.3763 3.7044 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1301 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 2.6277 -2.2368 3.0829 37 1 -0.2822 -5.7363 4.9744 38 1 -0.2702 -5.8992 3.1914 39 1 1.7469 -7.0165 5.2174 40 1 0.9303 -7.8756 3.8718 41 1 3.0352 -10.2038 3.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261156489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:14 Heat of formation + Delta-G solvation = -86.897883 kcal Electronic energy + Delta-G solvation = -20660.907162 eV Core-core repulsion = 17540.435307 eV Total energy + Delta-G solvation = -3120.471855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85596 -40.42109 -38.09715 -35.78918 -35.01506 -34.19142 -31.12972 -29.84108 -28.34344 -28.26662 -25.72641 -24.52427 -22.35362 -21.60496 -20.82879 -20.35195 -19.15242 -18.67347 -17.61062 -17.15616 -16.71002 -16.44152 -15.77446 -15.35560 -15.30627 -14.86887 -14.39590 -14.19182 -13.79363 -13.41597 -13.30575 -13.11166 -12.97310 -12.88559 -12.84418 -12.66091 -12.61321 -12.35613 -12.32137 -12.09054 -11.87464 -11.49907 -11.43852 -11.37977 -11.08951 -10.90478 -10.54088 -10.33154 -9.72336 -8.10439 -6.19482 1.07064 1.42726 1.43624 1.53490 1.68801 2.44878 2.91025 3.07597 3.22276 3.77637 3.82030 3.83995 3.96148 3.97033 4.03153 4.39783 4.48000 4.62855 4.63859 4.71066 4.78470 4.78634 4.85382 4.90434 4.92590 4.99110 5.04596 5.15529 5.19459 5.30532 5.31172 5.37918 5.49387 5.54440 5.61384 5.66837 5.87501 5.98931 6.37906 6.41703 6.89544 7.34110 7.47473 8.98762 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.003924 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.684795 B = 7133.622707 C = 7559.189209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.593 6.593 8 N -0.668 5.668 9 C 0.112 3.888 10 H 0.109 0.891 11 C -0.148 4.148 12 H 0.108 0.892 13 C -0.157 4.157 14 H 0.131 0.869 15 C -0.090 4.090 16 C -0.093 4.093 17 C 0.068 3.932 18 H -0.004 1.004 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.954 3.046 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.268 1.268 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.417 0.583 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 20.190 -2.713 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.240 4.240 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.484 6.484 8 N -0.325 5.325 9 C 0.007 3.993 10 H 0.126 0.874 11 C -0.168 4.168 12 H 0.126 0.874 13 C -0.176 4.176 14 H 0.149 0.851 15 C -0.128 4.128 16 C -0.131 4.131 17 C 0.049 3.951 18 H 0.015 0.985 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.188 4.188 22 N -0.560 5.560 23 Si 0.780 3.220 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.193 1.193 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.735 19.851 -3.223 20.455 hybrid contribution 1.028 -0.944 0.315 1.431 sum -2.707 18.907 -2.908 19.320 Atomic orbital electron populations 1.22476 0.93868 1.03572 1.03783 1.22477 0.94769 0.92838 0.81283 1.21882 1.02415 0.90214 1.04518 1.22497 1.01615 1.02127 0.97735 1.86308 1.71640 1.22483 1.47594 1.18123 0.78568 0.80924 0.81986 1.90888 1.42343 1.71041 1.44161 1.43905 1.54314 1.10776 1.23483 1.21558 1.02848 0.79392 0.95469 0.87352 1.23931 0.94523 0.95461 1.02845 0.87377 1.23878 0.97671 0.99751 0.96348 0.85106 1.21989 0.96856 0.92353 1.01568 1.22404 0.95454 0.96519 0.98745 1.19045 0.94257 0.87912 0.93853 0.98545 1.21484 0.98852 0.92352 1.43849 0.92579 1.25752 0.99600 0.98200 0.95218 1.70084 1.32542 1.05759 1.47637 0.85619 0.80347 0.77868 0.78194 1.19963 1.21260 1.19270 0.91658 0.88820 0.92372 0.91257 0.87723 0.90926 0.92506 0.88722 0.92081 0.74561 0.89847 0.92544 0.93824 0.93980 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 8.37 71.98 0.60 -3.13 16 2 C 0.12 2.61 1.13 -10.79 -0.01 2.59 16 3 C -0.13 -1.80 8.85 71.98 0.64 -1.17 16 4 C -0.18 -4.05 8.37 71.98 0.60 -3.45 16 5 O -0.37 -9.75 9.94 -55.50 -0.55 -10.31 16 6 C 0.65 20.83 8.06 129.79 1.05 21.88 16 7 O -0.59 -22.30 11.45 19.82 0.23 -22.07 16 8 N -0.67 -20.10 5.57 -570.11 -3.17 -23.28 16 9 C 0.11 4.01 5.98 44.99 0.27 4.28 16 10 H 0.11 4.46 7.40 -2.39 -0.02 4.45 16 11 C -0.15 -5.89 6.26 -10.07 -0.06 -5.96 16 12 H 0.11 4.13 7.91 -2.39 -0.02 4.11 16 13 C -0.16 -5.23 6.86 -10.07 -0.07 -5.30 16 14 H 0.13 3.58 8.14 -2.39 -0.02 3.57 16 15 C -0.09 -3.25 6.62 31.67 0.21 -3.04 16 16 C -0.09 -4.29 5.74 31.89 0.18 -4.11 16 17 C 0.07 3.41 2.52 -10.47 -0.03 3.39 16 18 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 19 C -0.53 -28.95 8.54 25.60 0.22 -28.73 16 20 H 0.06 2.99 7.61 -2.91 -0.02 2.97 16 21 C 0.01 0.60 5.35 84.65 0.45 1.06 16 22 N -0.92 -53.95 12.29 21.45 0.26 -53.69 16 23 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.67 5.88 -2.39 -0.01 1.66 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.42 10.16 8.94 -92.71 -0.83 9.33 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.04 2.04 8.05 -2.38 -0.02 2.02 16 40 H 0.04 2.15 7.56 -2.38 -0.02 2.13 16 41 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -65.25 329.87 3.03 -62.23 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.18 Total: 23.05 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.05 Total: -21.69 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -2.91 Total: -76.97 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.32 Total: -32.37 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.25 3.03 -62.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.672 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds