Wall clock time and date at job start Mon Mar 30 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.46497 * 119.99707 * 179.97438 * 8 6 5 10 10 H 1.08998 * 115.53330 * 9.49208 * 9 8 6 11 11 C 1.53000 * 117.46382 * 155.00003 * 9 8 6 12 12 H 1.09003 * 119.29451 * 356.28444 * 11 9 8 13 13 C 1.53008 * 117.45702 * 224.03796 * 9 8 6 14 14 H 1.08995 * 119.29932 * 3.71125 * 13 9 8 15 15 C 1.54272 * 118.19664 * 158.78582 * 13 9 8 16 16 C 1.54882 * 104.19600 * 40.56751 * 15 13 9 17 17 C 1.54262 * 118.20208 * 201.21526 * 11 9 8 18 18 H 1.08997 * 110.48783 * 200.74825 * 17 11 9 19 19 C 1.50698 * 110.49154 * 78.10171 * 17 11 9 20 20 H 1.08003 * 119.99432 * 0.02562 * 19 17 11 21 21 C 1.37877 * 120.00193 * 180.02562 * 19 17 11 22 22 N 1.31518 * 119.99832 * 180.02562 * 21 19 17 23 23 Si 1.86797 * 120.00088 * 0.02562 * 21 19 17 24 24 H 1.48494 * 109.47459 * 89.99597 * 23 21 19 25 25 H 1.48495 * 109.47053 * 210.00208 * 23 21 19 26 26 H 1.48502 * 109.46973 * 329.99815 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 0.97000 * 120.00566 * 359.97438 * 8 6 5 37 37 H 1.08998 * 110.48531 * 159.24776 * 15 13 9 38 38 H 1.09003 * 110.48190 * 281.75929 * 15 13 9 39 39 H 1.09007 * 110.75620 * 156.26051 * 16 15 13 40 40 H 1.09007 * 110.75841 * 279.44196 * 16 15 13 41 41 H 0.96997 * 119.99769 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 1.6732 -0.2041 -4.8135 10 1 1.1838 0.7691 -4.7779 11 6 2.5803 -0.4943 -6.0109 12 1 3.5088 -1.0440 -5.8559 13 6 1.2113 -1.1865 -5.8918 14 1 1.1311 -2.2461 -5.6491 15 6 0.3424 -0.6461 -7.0463 16 6 0.9806 0.7216 -7.3940 17 6 2.4957 0.4426 -7.2336 18 1 2.8885 -0.0526 -8.1216 19 6 3.2429 1.7242 -6.9688 20 1 3.7391 1.8741 -6.0213 21 6 3.2932 2.7054 -7.9362 22 7 3.9457 3.8237 -7.7052 23 14 2.4344 2.4464 -9.5747 24 1 1.0404 2.9508 -9.4881 25 1 3.1628 3.1846 -10.6374 26 1 2.4172 0.9978 -9.9010 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 2.6268 -1.5520 -3.4786 37 1 0.3874 -1.3171 -7.9041 38 1 -0.6890 -0.5158 -6.7187 39 1 0.7469 1.0075 -8.4196 40 1 0.6505 1.4907 -6.6955 41 1 3.9807 4.5141 -8.3856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:17 Heat of formation + Delta-G solvation = -61.453644 kcal Electronic energy + Delta-G solvation = -20996.734734 eV Core-core repulsion = 17877.366224 eV Total energy + Delta-G solvation = -3119.368510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61740 -39.21184 -36.87786 -34.37301 -33.62563 -32.39769 -29.74733 -28.42771 -27.47689 -27.37319 -23.52692 -23.45922 -21.55212 -20.07219 -19.31173 -18.73457 -17.77138 -16.87774 -16.37604 -15.92375 -15.78806 -14.51812 -14.45869 -14.33653 -13.72669 -13.52490 -13.05540 -12.76351 -12.61707 -12.57261 -12.27562 -11.98622 -11.91991 -11.84279 -11.61239 -11.30568 -11.23158 -10.94309 -10.50702 -10.44058 -10.28375 -10.23847 -10.01644 -9.85614 -9.70863 -9.15451 -8.68925 -8.51876 -8.31294 -6.03145 -4.01906 2.28829 3.03507 3.30873 3.39223 3.40413 4.21167 4.42054 4.44507 4.68288 4.72215 4.87043 5.16827 5.28175 5.38000 5.40269 5.45554 5.47602 5.54928 5.61874 5.67544 5.70579 5.84524 5.91297 5.94447 6.13488 6.20686 6.29818 6.31066 6.36785 6.43138 6.61396 6.67897 6.70830 6.86074 6.98089 7.02209 7.46858 7.68844 7.77018 8.56850 8.62848 9.02643 9.59079 11.10291 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027914 B = 0.004677 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.846430 B = 5984.795206 C = 6501.921123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.185 4.185 4 C -0.140 4.140 5 O -0.369 6.369 6 C 0.652 3.348 7 O -0.563 6.563 8 N -0.677 5.677 9 C 0.119 3.881 10 H 0.141 0.859 11 C -0.124 4.124 12 H 0.102 0.898 13 C -0.194 4.194 14 H 0.100 0.900 15 C -0.090 4.090 16 C -0.138 4.138 17 C 0.040 3.960 18 H 0.043 0.957 19 C -0.507 4.507 20 H 0.075 0.925 21 C 0.071 3.929 22 N -0.901 5.901 23 Si 0.878 3.122 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.265 1.265 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.402 0.598 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 -11.205 12.847 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.242 4.242 4 C -0.197 4.197 5 O -0.284 6.284 6 C 0.406 3.594 7 O -0.451 6.451 8 N -0.332 5.332 9 C 0.015 3.985 10 H 0.159 0.841 11 C -0.143 4.143 12 H 0.120 0.880 13 C -0.214 4.214 14 H 0.118 0.882 15 C -0.128 4.128 16 C -0.176 4.176 17 C 0.021 3.979 18 H 0.061 0.939 19 C -0.544 4.544 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.540 5.540 23 Si 0.707 3.293 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.190 1.190 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.048 -10.514 12.852 17.672 hybrid contribution -0.138 -0.399 -0.836 0.937 sum -6.186 -10.913 12.016 17.371 Atomic orbital electron populations 1.22520 0.94153 1.02718 1.04676 1.22016 0.94261 0.92315 0.81417 1.22530 1.01696 0.95301 1.04721 1.21851 1.02249 1.00929 0.94644 1.86275 1.71876 1.56500 1.13763 1.17964 0.78969 0.81635 0.80870 1.90902 1.41030 1.26408 1.86764 1.44002 1.54320 1.32119 1.02756 1.21544 1.02831 0.97795 0.76310 0.84122 1.23580 0.92670 1.01094 0.96953 0.88009 1.23731 1.00428 0.97481 0.99723 0.88164 1.21884 0.97627 0.97802 0.95478 1.23000 0.98878 0.95446 1.00230 1.19627 0.91819 0.94837 0.91630 0.93929 1.20940 1.32328 0.98438 1.02728 0.90732 1.24994 0.94895 0.95000 0.98156 1.69908 1.42488 1.06892 1.34684 0.86932 0.79674 0.78547 0.84151 1.20340 1.22154 1.18961 0.89164 0.91316 0.92368 0.91342 0.92101 0.89014 0.91655 0.91497 0.90287 0.76393 0.91682 0.92565 0.93087 0.91074 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 2 C 0.14 1.67 1.13 -90.62 -0.10 1.57 16 3 C -0.19 -2.36 8.37 37.15 0.31 -2.05 16 4 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 5 O -0.37 -5.38 9.94 -40.33 -0.40 -5.78 16 6 C 0.65 11.08 8.06 54.06 0.44 11.52 16 7 O -0.56 -10.98 11.45 -19.28 -0.22 -11.20 16 8 N -0.68 -10.77 5.57 -58.73 -0.33 -11.10 16 9 C 0.12 2.18 5.73 -67.93 -0.39 1.79 16 10 H 0.14 3.00 6.47 -51.93 -0.34 2.67 16 11 C -0.12 -2.35 6.30 -89.51 -0.56 -2.91 16 12 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 13 C -0.19 -3.18 6.99 -89.50 -0.63 -3.80 16 14 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 15 C -0.09 -1.52 6.77 -25.07 -0.17 -1.69 16 16 C -0.14 -2.87 4.81 -24.74 -0.12 -2.99 16 17 C 0.04 0.90 2.21 -90.11 -0.20 0.70 16 18 H 0.04 0.98 7.06 -51.93 -0.37 0.62 16 19 C -0.51 -14.01 9.13 -34.44 -0.31 -14.32 16 20 H 0.07 2.28 8.02 -52.48 -0.42 1.85 16 21 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 22 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 23 Si 0.88 21.52 24.65 -169.99 -4.19 17.33 16 24 H -0.28 -6.66 7.10 56.52 0.40 -6.26 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.26 -6.13 6.47 56.52 0.37 -5.77 16 27 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.46 5.88 -51.93 -0.31 1.16 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.40 5.25 8.94 -40.82 -0.36 4.89 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 1.07 5.28 -51.93 -0.27 0.80 16 40 H 0.07 1.57 7.31 -51.92 -0.38 1.19 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 321.12 15.07 4.84 4.84 Total: -1.00 -31.15 321.12 -7.29 -38.45 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.57 Total: 7.38 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.19 Total: -13.01 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.45 Total: -38.01 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.62 Total: -16.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.19 Total: 17.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.15 -7.29 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.007 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds