Wall clock time and date at job start Mon Mar 30 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.46497 * 119.99707 * 179.97438 * 8 6 5 10 10 H 1.08998 * 115.53330 * 9.49208 * 9 8 6 11 11 C 1.53000 * 117.46382 * 155.00003 * 9 8 6 12 12 H 1.09003 * 119.29451 * 356.28444 * 11 9 8 13 13 C 1.53008 * 117.45702 * 224.03796 * 9 8 6 14 14 H 1.08995 * 119.29932 * 3.71125 * 13 9 8 15 15 C 1.54272 * 118.19664 * 158.78582 * 13 9 8 16 16 C 1.54882 * 104.19600 * 40.56751 * 15 13 9 17 17 C 1.54262 * 118.20208 * 201.21526 * 11 9 8 18 18 H 1.08997 * 110.48783 * 200.74825 * 17 11 9 19 19 C 1.50698 * 110.49154 * 78.10171 * 17 11 9 20 20 H 1.08003 * 119.99432 * 0.02562 * 19 17 11 21 21 C 1.37877 * 120.00193 * 180.02562 * 19 17 11 22 22 N 1.31518 * 119.99832 * 180.02562 * 21 19 17 23 23 Si 1.86797 * 120.00088 * 0.02562 * 21 19 17 24 24 H 1.48494 * 109.47459 * 89.99597 * 23 21 19 25 25 H 1.48495 * 109.47053 * 210.00208 * 23 21 19 26 26 H 1.48502 * 109.46973 * 329.99815 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 0.97000 * 120.00566 * 359.97438 * 8 6 5 37 37 H 1.08998 * 110.48531 * 159.24776 * 15 13 9 38 38 H 1.09003 * 110.48190 * 281.75929 * 15 13 9 39 39 H 1.09007 * 110.75620 * 156.26051 * 16 15 13 40 40 H 1.09007 * 110.75841 * 279.44196 * 16 15 13 41 41 H 0.96997 * 119.99769 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 1.6732 -0.2041 -4.8135 10 1 1.1838 0.7691 -4.7779 11 6 2.5803 -0.4943 -6.0109 12 1 3.5088 -1.0440 -5.8559 13 6 1.2113 -1.1865 -5.8918 14 1 1.1311 -2.2461 -5.6491 15 6 0.3424 -0.6461 -7.0463 16 6 0.9806 0.7216 -7.3940 17 6 2.4957 0.4426 -7.2336 18 1 2.8885 -0.0526 -8.1216 19 6 3.2429 1.7242 -6.9688 20 1 3.7391 1.8741 -6.0213 21 6 3.2932 2.7054 -7.9362 22 7 3.9457 3.8237 -7.7052 23 14 2.4344 2.4464 -9.5747 24 1 1.0404 2.9508 -9.4881 25 1 3.1628 3.1846 -10.6374 26 1 2.4172 0.9978 -9.9010 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 2.6268 -1.5520 -3.4786 37 1 0.3874 -1.3171 -7.9041 38 1 -0.6890 -0.5158 -6.7187 39 1 0.7469 1.0075 -8.4196 40 1 0.6505 1.4907 -6.6955 41 1 3.9807 4.5141 -8.3856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261156490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:17 Heat of formation + Delta-G solvation = -82.784080 kcal Electronic energy + Delta-G solvation = -20997.659691 eV Core-core repulsion = 17877.366224 eV Total energy + Delta-G solvation = -3120.293467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.87753 -40.65649 -38.11749 -35.76060 -34.96765 -34.28730 -31.37424 -30.11632 -28.36378 -28.27735 -25.42793 -24.87942 -22.92490 -21.37846 -20.66817 -20.28032 -19.16402 -18.66241 -17.87652 -17.15744 -17.08379 -16.39931 -15.65818 -15.35463 -15.25277 -14.87563 -14.75718 -14.37909 -14.06030 -13.65154 -13.31643 -13.26104 -13.02732 -12.90011 -12.85498 -12.80600 -12.55081 -12.35708 -12.19314 -11.93144 -11.79483 -11.73670 -11.45500 -11.39168 -11.19252 -11.10129 -10.68470 -10.30868 -9.70219 -8.25780 -6.28836 1.07471 1.35170 1.37732 1.48397 1.70190 2.36833 2.92700 3.07280 3.12576 3.76406 3.80415 3.82020 3.90370 3.95564 3.97843 4.30590 4.40494 4.47774 4.61593 4.63925 4.74612 4.76758 4.79735 4.83878 4.87220 4.89243 4.96914 5.12831 5.15134 5.18669 5.27000 5.29614 5.34574 5.41482 5.49045 5.58653 5.67667 5.75678 6.35370 6.42061 6.77422 7.35450 7.36172 8.91888 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027914 B = 0.004677 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.846430 B = 5984.795206 C = 6501.921123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.184 4.184 4 C -0.132 4.132 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.594 6.594 8 N -0.667 5.667 9 C 0.108 3.892 10 H 0.101 0.899 11 C -0.145 4.145 12 H 0.115 0.885 13 C -0.151 4.151 14 H 0.141 0.859 15 C -0.085 4.085 16 C -0.140 4.140 17 C 0.033 3.967 18 H 0.048 0.952 19 C -0.507 4.507 20 H 0.024 0.976 21 C 0.007 3.993 22 N -0.957 5.957 23 Si 0.945 3.055 24 H -0.269 1.269 25 H -0.297 1.297 26 H -0.235 1.235 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.418 0.582 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 -14.415 13.023 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.241 4.241 4 C -0.189 4.189 5 O -0.280 6.280 6 C 0.402 3.598 7 O -0.485 6.485 8 N -0.324 5.324 9 C 0.003 3.997 10 H 0.119 0.881 11 C -0.164 4.164 12 H 0.133 0.867 13 C -0.170 4.170 14 H 0.158 0.842 15 C -0.122 4.122 16 C -0.178 4.178 17 C 0.014 3.986 18 H 0.066 0.934 19 C -0.545 4.545 20 H 0.042 0.958 21 C -0.189 4.189 22 N -0.598 5.598 23 Si 0.770 3.230 24 H -0.194 1.194 25 H -0.224 1.224 26 H -0.158 1.158 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.255 0.745 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.557 -13.777 13.052 20.427 hybrid contribution 0.388 0.682 -0.739 1.078 sum -7.169 -13.095 12.313 19.352 Atomic orbital electron populations 1.22469 0.93751 1.03191 1.04213 1.22466 0.94850 0.92281 0.81677 1.22504 1.01519 0.95984 1.04111 1.21876 1.02376 1.01348 0.93329 1.86298 1.71702 1.56487 1.13494 1.18157 0.78692 0.81280 0.81703 1.90902 1.42455 1.27815 1.87327 1.43806 1.54400 1.32346 1.01810 1.21227 1.03257 0.97653 0.77555 0.88113 1.23463 0.94990 1.01743 0.96226 0.86738 1.23825 0.97192 0.98703 0.97292 0.84152 1.21927 0.98258 0.95452 0.96583 1.22864 0.97631 0.97607 0.99679 1.19598 0.92437 0.92866 0.93662 0.93419 1.21252 1.31807 1.00944 1.00517 0.95797 1.25943 0.95830 0.94510 1.02623 1.70086 1.45057 1.08344 1.36325 0.85855 0.78430 0.80105 0.78630 1.19430 1.22448 1.15793 0.92541 0.88827 0.91350 0.88637 0.92304 0.92888 0.90653 0.91342 0.87717 0.74514 0.88727 0.90627 0.92939 0.93672 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.37 71.98 0.60 -3.40 16 2 C 0.12 2.88 1.13 -10.79 -0.01 2.87 16 3 C -0.18 -4.70 8.37 71.98 0.60 -4.10 16 4 C -0.13 -1.98 8.85 71.98 0.64 -1.34 16 5 O -0.37 -10.45 9.94 -55.53 -0.55 -11.00 16 6 C 0.65 22.35 8.06 129.79 1.05 23.40 16 7 O -0.59 -24.38 11.45 19.82 0.23 -24.16 16 8 N -0.67 -20.95 5.57 -570.12 -3.17 -24.13 16 9 C 0.11 3.94 5.73 44.99 0.26 4.20 16 10 H 0.10 4.53 6.47 -2.39 -0.02 4.52 16 11 C -0.14 -5.37 6.30 -10.07 -0.06 -5.43 16 12 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 13 C -0.15 -4.43 6.99 -10.07 -0.07 -4.50 16 14 H 0.14 3.14 8.14 -2.39 -0.02 3.12 16 15 C -0.08 -2.53 6.77 31.67 0.21 -2.32 16 16 C -0.14 -5.65 4.81 31.88 0.15 -5.50 16 17 C 0.03 1.50 2.21 -10.47 -0.02 1.47 16 18 H 0.05 2.10 7.06 -2.39 -0.02 2.09 16 19 C -0.51 -29.29 9.13 25.60 0.23 -29.06 16 20 H 0.02 1.56 8.02 -2.91 -0.02 1.54 16 21 C 0.01 0.41 5.46 84.65 0.46 0.87 16 22 N -0.96 -61.69 13.96 21.45 0.30 -61.40 16 23 Si 0.94 44.63 24.65 68.60 1.69 46.32 16 24 H -0.27 -12.24 7.10 99.48 0.71 -11.54 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 26 H -0.23 -9.88 6.47 99.48 0.64 -9.24 16 27 H 0.06 1.68 5.88 -2.39 -0.01 1.66 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.79 5.88 -2.39 -0.01 1.77 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.42 10.27 8.94 -92.71 -0.83 9.44 16 37 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 2.08 5.28 -2.38 -0.01 2.06 16 40 H 0.04 2.02 7.31 -2.38 -0.02 2.01 16 41 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -73.20 321.12 2.66 -70.54 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.13 Total: 26.65 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 4.04 Total: -22.84 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.88 Total: -85.52 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.32 Total: -35.16 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.69 Total: 46.32 kcal Total: -73.20 2.66 -70.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.242 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds