Wall clock time and date at job start Mon Mar 30 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47263 * 2 1 4 4 C 1.52996 * 109.47521 * 120.00115 * 2 1 3 5 5 H 1.08999 * 109.47537 * 184.99938 * 4 2 1 6 6 O 1.42903 * 109.46889 * 305.00197 * 4 2 1 7 7 C 1.53000 * 109.47100 * 64.99824 * 4 2 1 8 8 N 1.46900 * 109.47457 * 180.02562 * 7 4 2 9 9 C 1.46897 * 111.00340 * 169.99800 * 8 7 4 10 10 C 1.50694 * 109.47353 * 285.96432 * 9 8 7 11 11 H 1.08000 * 120.00051 * 4.65751 * 10 9 8 12 12 C 1.37885 * 120.00340 * 184.65803 * 10 9 8 13 13 N 1.31512 * 119.99760 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47065 * 60.00124 * 14 12 10 16 16 H 1.48501 * 109.46832 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47331 * 299.99990 * 14 12 10 18 18 C 1.46899 * 111.00042 * 293.95431 * 8 7 4 19 19 C 1.50700 * 109.47301 * 164.34309 * 18 8 7 20 20 C 1.34513 * 125.78858 * 95.70234 * 19 18 8 21 21 C 1.41384 * 106.83879 * 179.88904 * 20 19 18 22 22 C 1.34512 * 106.84171 * 0.36890 * 21 20 19 23 23 O 1.34299 * 125.79026 * 276.00871 * 19 18 8 24 24 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47432 * 300.00015 * 1 2 3 26 26 H 1.09003 * 109.47152 * 60.00022 * 1 2 3 27 27 H 1.09007 * 109.47299 * 240.00182 * 2 1 3 28 28 H 1.09002 * 109.47001 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47018 * 300.00060 * 3 2 1 30 30 H 1.08995 * 109.47164 * 60.00128 * 3 2 1 31 31 H 0.96699 * 114.00096 * 59.99722 * 6 4 2 32 32 H 1.09009 * 109.47001 * 300.00440 * 7 4 2 33 33 H 1.08993 * 109.47184 * 60.00189 * 7 4 2 34 34 H 1.09004 * 109.47177 * 45.96557 * 9 8 7 35 35 H 1.09005 * 109.47350 * 165.96320 * 9 8 7 36 36 H 0.96999 * 120.00108 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47281 * 284.34940 * 18 8 7 38 38 H 1.09002 * 109.47026 * 44.34151 * 18 8 7 39 39 H 1.08004 * 126.57858 * 0.02562 * 20 19 18 40 40 H 1.07999 * 126.57529 * 180.16274 * 21 20 19 41 41 H 1.08000 * 125.78613 * 179.74464 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 8 1.4702 -0.1188 2.4130 7 6 1.6353 -2.1955 1.1879 8 7 2.1245 -2.8879 2.3875 9 6 1.5582 -4.2400 2.4827 10 6 0.1122 -4.1511 2.8975 11 1 -0.3618 -3.1861 2.9998 12 6 -0.6057 -5.3017 3.1464 13 7 -0.0283 -6.4767 3.0223 14 14 -2.3979 -5.1913 3.6613 15 1 -3.1767 -4.5053 2.5991 16 1 -2.9391 -6.5589 3.8661 17 1 -2.5029 -4.4221 4.9271 18 6 3.5927 -2.9293 2.4096 19 6 4.0645 -3.2862 3.7956 20 6 4.3879 -4.5199 4.2231 21 6 4.7765 -4.3955 5.5768 22 6 4.6594 -3.0945 5.8979 23 8 4.2277 -2.4274 4.8152 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.5041 -0.1508 2.4395 32 1 0.5489 -2.2724 1.1420 33 1 2.0698 -2.6549 0.3002 34 1 1.6284 -4.7324 1.5128 35 1 2.1139 -4.8154 3.2233 36 1 -0.5334 -7.2862 3.1971 37 1 3.9458 -3.6788 1.7013 38 1 3.9879 -1.9522 2.1316 39 1 4.3587 -5.4304 3.6429 40 1 5.1015 -5.1927 6.2289 41 1 4.8755 -2.6603 6.8629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284199807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:10 Heat of formation + Delta-G solvation = -39.748413 kcal Electronic energy + Delta-G solvation = -21251.722482 eV Core-core repulsion = 18133.295181 eV Total energy + Delta-G solvation = -3118.427300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.93657 -38.61517 -36.03185 -33.41726 -32.60391 -32.35858 -30.20217 -28.37402 -27.20476 -26.56469 -24.50340 -22.74148 -21.17764 -20.64733 -19.81667 -19.54055 -16.85050 -16.46828 -16.14983 -15.63282 -15.34938 -14.79913 -14.71530 -14.18090 -13.80108 -13.64968 -13.20015 -12.74975 -12.60774 -12.24969 -12.19204 -12.02420 -11.97710 -11.84178 -11.36177 -11.27509 -10.99413 -10.93174 -10.78140 -10.69238 -10.58277 -10.13286 -9.93473 -9.36689 -9.21899 -9.19284 -8.39897 -7.89140 -7.27154 -6.00606 -4.01091 2.30957 3.18193 3.33330 3.37901 3.40952 3.59456 4.42521 4.61467 4.94230 5.01240 5.12326 5.18781 5.30655 5.36604 5.50559 5.57457 5.59697 5.69123 5.71914 5.79079 5.86558 5.91381 5.95353 6.02954 6.14695 6.25947 6.31415 6.35778 6.43368 6.49396 6.62830 6.65493 7.06300 7.21455 7.29574 7.72678 7.81314 8.06677 8.16151 8.21974 8.52538 9.04731 9.62038 11.10165 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.010384 B = 0.008720 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.709034 B = 3210.181644 C = 5311.315056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.129 4.129 3 C -0.140 4.140 4 C 0.113 3.887 5 H 0.089 0.911 6 O -0.545 6.545 7 C 0.031 3.969 8 N -0.520 5.520 9 C 0.187 3.813 10 C -0.501 4.501 11 H 0.061 0.939 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.127 3.873 19 C 0.023 3.977 20 C -0.209 4.209 21 C -0.212 4.212 22 C -0.057 4.057 23 O -0.167 6.167 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.370 0.630 32 H 0.091 0.909 33 H 0.027 0.973 34 H -0.013 1.013 35 H 0.043 0.957 36 H 0.261 0.739 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 10.023 -3.271 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.198 4.198 4 C 0.053 3.947 5 H 0.106 0.894 6 O -0.351 6.351 7 C -0.097 4.097 8 N -0.245 5.245 9 C 0.062 3.938 10 C -0.540 4.540 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.001 4.001 19 C -0.028 4.028 20 C -0.229 4.229 21 C -0.231 4.231 22 C -0.125 4.125 23 O -0.063 6.063 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.217 0.783 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.005 0.995 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 7.073 10.500 -2.727 12.950 hybrid contribution -1.292 -1.094 -0.408 1.741 sum 5.781 9.406 -3.135 11.477 Atomic orbital electron populations 1.21900 0.95020 1.02591 1.01706 1.21795 0.96692 0.97031 0.99309 1.21745 1.00586 0.95863 1.01581 1.21991 0.97584 0.90895 0.84189 0.89363 1.86539 1.25060 1.80713 1.42743 1.22775 1.02324 0.93411 0.91214 1.62031 1.02704 1.22423 1.37310 1.19881 0.95637 0.82406 0.95869 1.21060 0.94999 0.92550 1.45400 0.92085 1.24964 0.98472 0.95337 0.95775 1.69940 1.36676 0.97354 1.49854 0.86598 0.84879 0.76936 0.79207 1.20352 1.21403 1.20190 1.20468 0.91402 1.00792 0.87451 1.22270 1.02035 0.88144 0.90335 1.21545 1.07541 0.97724 0.96060 1.21714 1.07781 0.96814 0.96813 1.23826 1.05268 0.92125 0.91290 1.84014 1.65526 1.38255 1.18465 0.91676 0.92360 0.92808 0.90859 0.93074 0.93279 0.92052 0.78272 0.89085 0.95470 0.99502 0.93907 0.92946 0.92781 0.90404 0.83935 0.84155 0.78868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.52 37.15 0.32 -1.51 16 2 C -0.13 -1.57 2.75 -90.62 -0.25 -1.82 16 3 C -0.14 -1.55 9.09 37.16 0.34 -1.21 16 4 C 0.11 1.70 2.63 -26.73 -0.07 1.63 16 5 H 0.09 1.32 6.29 -51.93 -0.33 1.00 16 6 O -0.55 -9.12 12.64 -35.23 -0.45 -9.57 16 7 C 0.03 0.56 4.21 -3.82 -0.02 0.54 16 8 N -0.52 -11.10 4.25 -237.52 -1.01 -12.11 16 9 C 0.19 4.81 4.58 -4.98 -0.02 4.79 16 10 C -0.50 -13.99 8.57 -34.44 -0.30 -14.29 16 11 H 0.06 1.68 7.56 -52.49 -0.40 1.28 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 14 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.13 2.37 5.38 -4.98 -0.03 2.34 16 19 C 0.02 0.46 6.29 -35.63 -0.22 0.24 16 20 C -0.21 -4.03 9.53 -39.70 -0.38 -4.41 16 21 C -0.21 -3.61 10.91 -39.70 -0.43 -4.05 16 22 C -0.06 -0.93 12.09 29.42 0.36 -0.58 16 23 O -0.17 -3.25 10.65 5.72 0.06 -3.19 16 24 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 25 H 0.06 0.66 6.72 -51.93 -0.35 0.31 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.72 7.82 -51.93 -0.41 0.31 16 31 H 0.37 5.54 7.19 45.56 0.33 5.86 16 32 H 0.09 1.76 5.61 -51.92 -0.29 1.47 16 33 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 34 H -0.01 -0.35 8.02 -51.93 -0.42 -0.76 16 35 H 0.04 1.19 6.15 -51.93 -0.32 0.88 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.05 0.96 8.06 -51.93 -0.42 0.54 16 38 H 0.08 1.29 5.94 -51.93 -0.31 0.99 16 39 H 0.14 2.70 8.06 -52.48 -0.42 2.28 16 40 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 41 H 0.19 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -31.74 330.78 -7.26 -39.00 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.76 Total: 6.95 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.80 Total: -16.83 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.27 Total: -38.04 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.38 Total: -12.76 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.74 -7.26 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284199807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.745 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds