Wall clock time and date at job start Mon Mar 30 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47263 * 2 1 4 4 C 1.52996 * 109.47521 * 120.00115 * 2 1 3 5 5 H 1.08999 * 109.47537 * 184.99938 * 4 2 1 6 6 O 1.42903 * 109.46889 * 305.00197 * 4 2 1 7 7 C 1.53000 * 109.47100 * 64.99824 * 4 2 1 8 8 N 1.46900 * 109.47457 * 180.02562 * 7 4 2 9 9 C 1.46897 * 111.00340 * 169.99800 * 8 7 4 10 10 C 1.50694 * 109.47353 * 285.96432 * 9 8 7 11 11 H 1.08000 * 120.00051 * 4.65751 * 10 9 8 12 12 C 1.37885 * 120.00340 * 184.65803 * 10 9 8 13 13 N 1.31512 * 119.99760 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47065 * 60.00124 * 14 12 10 16 16 H 1.48501 * 109.46832 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47331 * 299.99990 * 14 12 10 18 18 C 1.46899 * 111.00042 * 293.95431 * 8 7 4 19 19 C 1.50700 * 109.47301 * 164.34309 * 18 8 7 20 20 C 1.34513 * 125.78858 * 95.70234 * 19 18 8 21 21 C 1.41384 * 106.83879 * 179.88904 * 20 19 18 22 22 C 1.34512 * 106.84171 * 0.36890 * 21 20 19 23 23 O 1.34299 * 125.79026 * 276.00871 * 19 18 8 24 24 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47432 * 300.00015 * 1 2 3 26 26 H 1.09003 * 109.47152 * 60.00022 * 1 2 3 27 27 H 1.09007 * 109.47299 * 240.00182 * 2 1 3 28 28 H 1.09002 * 109.47001 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47018 * 300.00060 * 3 2 1 30 30 H 1.08995 * 109.47164 * 60.00128 * 3 2 1 31 31 H 0.96699 * 114.00096 * 59.99722 * 6 4 2 32 32 H 1.09009 * 109.47001 * 300.00440 * 7 4 2 33 33 H 1.08993 * 109.47184 * 60.00189 * 7 4 2 34 34 H 1.09004 * 109.47177 * 45.96557 * 9 8 7 35 35 H 1.09005 * 109.47350 * 165.96320 * 9 8 7 36 36 H 0.96999 * 120.00108 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47281 * 284.34940 * 18 8 7 38 38 H 1.09002 * 109.47026 * 44.34151 * 18 8 7 39 39 H 1.08004 * 126.57858 * 0.02562 * 20 19 18 40 40 H 1.07999 * 126.57529 * 180.16274 * 21 20 19 41 41 H 1.08000 * 125.78613 * 179.74464 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6443 1.2951 6 8 1.4702 -0.1188 2.4130 7 6 1.6353 -2.1955 1.1879 8 7 2.1245 -2.8879 2.3875 9 6 1.5582 -4.2400 2.4827 10 6 0.1122 -4.1511 2.8975 11 1 -0.3618 -3.1861 2.9998 12 6 -0.6057 -5.3017 3.1464 13 7 -0.0283 -6.4767 3.0223 14 14 -2.3979 -5.1913 3.6613 15 1 -3.1767 -4.5053 2.5991 16 1 -2.9391 -6.5589 3.8661 17 1 -2.5029 -4.4221 4.9271 18 6 3.5927 -2.9293 2.4096 19 6 4.0645 -3.2862 3.7956 20 6 4.3879 -4.5199 4.2231 21 6 4.7765 -4.3955 5.5768 22 6 4.6594 -3.0945 5.8979 23 8 4.2277 -2.4274 4.8152 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.5041 -0.1508 2.4395 32 1 0.5489 -2.2724 1.1420 33 1 2.0698 -2.6549 0.3002 34 1 1.6284 -4.7324 1.5128 35 1 2.1139 -4.8154 3.2233 36 1 -0.5334 -7.2862 3.1971 37 1 3.9458 -3.6788 1.7013 38 1 3.9879 -1.9522 2.1316 39 1 4.3587 -5.4304 3.6429 40 1 5.1015 -5.1927 6.2289 41 1 4.8755 -2.6603 6.8629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284199807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:10 Heat of formation + Delta-G solvation = -61.686619 kcal Electronic energy + Delta-G solvation = -21252.673794 eV Core-core repulsion = 18133.295181 eV Total energy + Delta-G solvation = -3119.378612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.35583 -39.93444 -37.57822 -34.70462 -34.53883 -33.80355 -31.65766 -30.09302 -28.34800 -27.95546 -26.13255 -24.39294 -22.57860 -22.25312 -21.11715 -20.83703 -18.53453 -18.24045 -17.49844 -17.03698 -16.77803 -16.50881 -16.01532 -15.73948 -15.38121 -14.86596 -14.67657 -14.27157 -14.02702 -13.71500 -13.63453 -13.46574 -13.34887 -12.90151 -12.87099 -12.78592 -12.65006 -12.48254 -12.37572 -12.06815 -11.87654 -11.72027 -11.46916 -11.16853 -10.75062 -10.64193 -10.46142 -9.32211 -8.98860 -8.17560 -6.26264 0.89398 1.39576 1.42958 1.50257 1.77008 2.23745 2.40719 3.12627 3.22114 3.75856 3.86734 3.91030 3.98206 4.10704 4.18499 4.22228 4.38511 4.42641 4.45936 4.49210 4.76765 4.83405 4.85047 4.99627 5.00602 5.05796 5.09034 5.13604 5.17358 5.22168 5.25958 5.32924 5.48795 5.51843 5.64947 5.69407 6.07726 6.29896 6.40329 6.56820 6.87239 6.96489 7.41921 8.92821 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.010384 B = 0.008720 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.709034 B = 3210.181644 C = 5311.315056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.136 4.136 4 C 0.122 3.878 5 H 0.092 0.908 6 O -0.560 6.560 7 C 0.032 3.968 8 N -0.530 5.530 9 C 0.204 3.796 10 C -0.515 4.515 11 H 0.060 0.940 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.963 3.037 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.128 3.872 19 C -0.003 4.003 20 C -0.227 4.227 21 C -0.227 4.227 22 C -0.045 4.045 23 O -0.184 6.184 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.375 0.625 32 H 0.074 0.926 33 H 0.033 0.967 34 H -0.039 1.039 35 H 0.016 0.984 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.166 0.834 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 11.699 -2.972 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.193 4.193 4 C 0.063 3.937 5 H 0.110 0.890 6 O -0.367 6.367 7 C -0.096 4.096 8 N -0.254 5.254 9 C 0.078 3.922 10 C -0.554 4.554 11 H 0.079 0.921 12 C -0.195 4.195 13 N -0.574 5.574 14 Si 0.788 3.212 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.198 1.198 18 C 0.000 4.000 19 C -0.053 4.053 20 C -0.247 4.247 21 C -0.246 4.246 22 C -0.113 4.113 23 O -0.080 6.080 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.051 0.949 34 H -0.021 1.021 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.151 0.849 40 H 0.183 0.817 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.823 12.200 -2.444 14.190 hybrid contribution -1.143 -1.624 -0.474 2.042 sum 5.680 10.576 -2.918 12.354 Atomic orbital electron populations 1.21889 0.94741 1.01770 1.02713 1.21736 0.96903 0.97669 0.97854 1.21705 1.00863 0.94677 1.02065 1.21966 0.97713 0.88809 0.85246 0.89035 1.86511 1.25731 1.80704 1.43727 1.22841 1.01282 0.95294 0.90147 1.61933 1.04431 1.19749 1.39287 1.19485 0.94826 0.84440 0.93445 1.21382 0.96167 0.92605 1.45216 0.92146 1.25844 1.03050 0.94912 0.95708 1.70073 1.38459 0.98052 1.50841 0.85529 0.79487 0.77102 0.79072 1.18877 1.21007 1.19817 1.20525 0.89694 1.02175 0.87580 1.22407 1.03393 0.88510 0.91014 1.21746 1.07919 0.97460 0.97547 1.22063 1.08227 0.98219 0.96099 1.24761 1.02778 0.91928 0.91794 1.84002 1.65999 1.38803 1.19165 0.93381 0.92135 0.91042 0.89969 0.92644 0.91524 0.92815 0.77622 0.90755 0.94872 1.02108 0.96618 0.92876 0.92360 0.88158 0.84850 0.81652 0.74274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.52 71.98 0.61 -2.78 16 2 C -0.12 -2.76 2.75 -10.80 -0.03 -2.79 16 3 C -0.14 -2.65 9.09 71.98 0.65 -1.99 16 4 C 0.12 3.55 2.63 30.59 0.08 3.63 16 5 H 0.09 2.61 6.29 -2.39 -0.02 2.59 16 6 O -0.56 -18.24 12.64 -148.98 -1.88 -20.12 16 7 C 0.03 1.17 4.21 86.30 0.36 1.53 16 8 N -0.53 -23.01 4.25 -905.37 -3.85 -26.86 16 9 C 0.20 10.90 4.58 85.56 0.39 11.29 16 10 C -0.52 -29.33 8.57 25.60 0.22 -29.11 16 11 H 0.06 3.37 7.56 -2.91 -0.02 3.34 16 12 C 0.00 0.15 5.46 84.66 0.46 0.62 16 13 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 14 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 18 C 0.13 4.83 5.38 85.56 0.46 5.29 16 19 C 0.00 -0.10 6.29 24.83 0.16 0.06 16 20 C -0.23 -8.93 9.53 22.19 0.21 -8.72 16 21 C -0.23 -7.53 10.91 22.19 0.24 -7.29 16 22 C -0.05 -1.40 12.09 66.97 0.81 -0.59 16 23 O -0.18 -7.00 10.65 -2.44 -0.03 -7.02 16 24 H 0.05 1.22 6.56 -2.39 -0.02 1.20 16 25 H 0.06 1.29 6.72 -2.39 -0.02 1.28 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.14 7.82 -2.39 -0.02 1.12 16 31 H 0.38 11.02 7.19 -74.06 -0.53 10.49 16 32 H 0.07 2.93 5.61 -2.38 -0.01 2.91 16 33 H 0.03 1.15 8.12 -2.39 -0.02 1.13 16 34 H -0.04 -2.21 8.02 -2.38 -0.02 -2.23 16 35 H 0.02 0.92 6.15 -2.38 -0.01 0.90 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.06 2.12 8.06 -2.39 -0.02 2.10 16 38 H 0.10 3.27 5.94 -2.39 -0.01 3.26 16 39 H 0.13 5.34 8.06 -2.91 -0.02 5.32 16 40 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.24 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -69.02 330.78 1.67 -67.35 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.48 Total: 27.12 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 4.63 Total: -30.85 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -3.56 Total: -83.18 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.91 Total: -27.14 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.02 1.67 -67.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284199807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.660 kcal (2) G-P(sol) polarization free energy of solvation -69.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds