Wall clock time and date at job start Mon Mar 30 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47226 * 2 1 4 4 N 1.46898 * 109.46978 * 120.00391 * 2 1 3 5 5 C 1.46903 * 110.99896 * 159.75329 * 4 2 1 6 6 C 1.53002 * 109.46901 * 283.33517 * 5 4 2 7 7 O 1.42900 * 109.46890 * 67.06202 * 6 5 4 8 8 C 1.42901 * 113.99647 * 184.78707 * 7 6 5 9 9 C 1.50708 * 109.47034 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99473 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00076 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99843 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00023 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47628 * 89.99907 * 13 11 9 15 15 H 1.48508 * 109.47015 * 209.99966 * 13 11 9 16 16 H 1.48501 * 109.46949 * 329.99540 * 13 11 9 17 17 C 1.46900 * 110.99530 * 283.69942 * 4 2 1 18 18 C 1.50705 * 109.47111 * 80.08214 * 17 4 2 19 19 C 1.34509 * 125.78848 * 80.81341 * 18 17 4 20 20 C 1.41380 * 106.84119 * 180.02562 * 19 18 17 21 21 C 1.34519 * 106.84050 * 359.97438 * 20 19 18 22 22 O 1.34301 * 108.41897 * 359.74058 * 21 20 19 23 23 H 1.09000 * 109.46795 * 309.36345 * 1 2 3 24 24 H 1.09004 * 109.47319 * 69.35755 * 1 2 3 25 25 H 1.08997 * 109.47483 * 189.36194 * 1 2 3 26 26 H 1.09004 * 109.46957 * 240.00068 * 2 1 3 27 27 H 1.09004 * 109.46797 * 172.10837 * 3 2 1 28 28 H 1.09002 * 109.46795 * 292.10007 * 3 2 1 29 29 H 1.08991 * 109.47515 * 52.10403 * 3 2 1 30 30 H 1.08994 * 109.47459 * 43.33753 * 5 4 2 31 31 H 1.08996 * 109.46842 * 163.33854 * 5 4 2 32 32 H 1.08996 * 109.47041 * 187.06423 * 6 5 4 33 33 H 1.09002 * 109.46807 * 307.06354 * 6 5 4 34 34 H 1.08997 * 109.47207 * 299.99865 * 8 7 6 35 35 H 1.09002 * 109.47233 * 60.00439 * 8 7 6 36 36 H 0.97002 * 119.99582 * 180.02562 * 12 11 9 37 37 H 1.09003 * 109.47161 * 200.07877 * 17 4 2 38 38 H 1.09002 * 109.47636 * 320.08284 * 17 4 2 39 39 H 1.07998 * 126.58397 * 0.03462 * 19 18 17 40 40 H 1.08002 * 126.58181 * 179.97438 * 20 19 18 41 41 H 1.07992 * 125.78719 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.4082 -1.1373 1.0205 6 6 3.4342 -2.3837 0.1335 7 8 3.0194 -2.0359 -1.1890 8 6 2.9042 -3.1518 -2.0743 9 6 2.4639 -2.6715 -3.4332 10 1 2.2890 -1.6194 -3.6035 11 6 2.2842 -3.5751 -4.4589 12 7 1.9004 -3.1559 -5.6449 13 14 2.5859 -5.3948 -4.1640 14 1 1.3271 -6.0381 -3.7095 15 1 3.0398 -6.0322 -5.4262 16 1 3.6309 -5.5608 -3.1221 17 6 1.8888 0.1590 2.3892 18 6 0.4663 0.1146 2.8848 19 6 -0.0727 -0.8575 3.6423 20 6 -1.4207 -0.4980 3.8718 21 6 -1.6246 0.6726 3.2412 22 8 -0.4765 1.0419 2.6502 23 1 -0.3633 0.6518 0.7945 24 1 -0.3634 0.3623 -0.9617 25 1 -0.3634 -1.0139 0.1672 26 1 1.8933 -0.5138 -0.8900 27 1 3.1209 1.4456 0.1411 28 1 1.7966 1.9138 -0.9522 29 1 1.5661 1.9954 0.8109 30 1 3.9861 -0.3431 0.5480 31 1 3.8420 -1.3737 1.9920 32 1 4.4465 -2.7866 0.1027 33 1 2.7568 -3.1340 0.5413 34 1 3.8706 -3.6484 -2.1605 35 1 2.1688 -3.8535 -1.6807 36 1 1.7736 -3.7917 -6.3664 37 1 2.5572 -0.2030 3.1704 38 1 2.1522 1.1851 2.1324 39 1 0.4280 -1.7427 4.0057 40 1 -2.1473 -1.0561 4.4436 41 1 -2.5526 1.2243 3.2184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293620041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:14 Heat of formation + Delta-G solvation = -15.712745 kcal Electronic energy + Delta-G solvation = -21149.105838 eV Core-core repulsion = 18031.720803 eV Total energy + Delta-G solvation = -3117.385035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.54861 -38.66875 -36.49638 -33.03253 -32.71810 -31.88182 -31.04393 -28.50533 -27.15317 -26.87963 -24.92343 -22.10229 -21.70927 -21.63980 -20.59326 -19.24734 -17.28308 -16.83814 -16.48058 -15.87204 -15.66369 -15.04832 -14.78070 -14.41804 -14.11493 -13.55191 -13.39471 -12.82072 -12.80473 -12.68622 -12.60740 -12.26556 -12.15622 -12.05663 -11.48302 -11.31751 -11.09338 -10.92284 -10.81468 -10.71778 -10.59422 -10.04020 -9.84956 -9.74230 -9.14472 -8.79408 -8.45253 -8.34869 -8.07885 -6.10519 -4.09237 1.78853 2.69706 3.04108 3.26261 3.33067 3.34515 4.18264 4.36879 4.63044 4.75654 4.98505 5.10203 5.21556 5.22065 5.28871 5.38272 5.46021 5.54314 5.62842 5.70886 5.86835 5.91362 5.97382 6.01592 6.08632 6.12310 6.17192 6.21492 6.29017 6.41825 6.57877 6.63129 6.77126 6.87176 7.03130 7.20342 7.37638 7.37903 7.63224 8.03107 8.67452 9.00151 9.49248 11.02483 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.004514 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.553272 B = 6201.142530 C = 6285.918146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 C -0.179 4.179 4 N -0.523 5.523 5 C 0.059 3.941 6 C 0.063 3.937 7 O -0.377 6.377 8 C 0.169 3.831 9 C -0.517 4.517 10 H 0.081 0.919 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.875 3.125 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.267 1.267 17 C 0.116 3.884 18 C 0.012 3.988 19 C -0.198 4.198 20 C -0.214 4.214 21 C -0.050 4.050 22 O -0.174 6.174 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.130 0.870 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.001 0.999 35 H -0.001 1.001 36 H 0.266 0.734 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 6.629 19.369 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.046 4.046 3 C -0.238 4.238 4 N -0.247 5.247 5 C -0.069 4.069 6 C -0.015 4.015 7 O -0.297 6.297 8 C 0.094 3.906 9 C -0.555 4.555 10 H 0.100 0.900 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.702 3.298 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.191 1.191 17 C -0.011 4.011 18 C -0.038 4.038 19 C -0.218 4.218 20 C -0.233 4.233 21 C -0.118 4.118 22 O -0.071 6.071 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.148 0.852 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.188 6.590 19.007 20.236 hybrid contribution 0.394 -0.847 0.121 0.942 sum -1.794 5.743 19.129 20.052 Atomic orbital electron populations 1.21996 0.94918 1.02231 1.01344 1.22205 0.95757 0.92247 0.94434 1.22415 1.00598 0.98752 1.02025 1.62150 1.20504 1.39504 1.02565 1.22194 0.88549 0.97347 0.98801 1.22342 0.97867 0.95923 0.85339 1.87781 1.88287 1.34467 1.19155 1.20587 0.94566 0.85688 0.89756 1.20879 1.45725 0.97011 0.91845 0.90046 1.24755 0.94665 0.98676 0.94813 1.69879 1.46832 1.34865 1.01880 0.86862 0.79199 0.85708 0.78039 1.19948 1.20869 1.19129 1.20671 0.87801 0.98585 0.94073 1.22216 0.91678 0.89708 1.00190 1.21478 0.94934 1.00942 1.04462 1.21795 0.97479 0.98251 1.05757 1.23915 0.89292 0.98522 1.00064 1.84041 1.18808 1.44583 1.59649 0.92229 0.92786 0.92376 0.85224 0.93002 0.91902 0.92861 0.93415 0.90328 0.94022 0.93375 0.98120 0.98328 0.92418 0.88728 0.91708 0.83833 0.83912 0.78620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.57 37.16 0.32 -2.12 16 2 C 0.06 1.00 2.73 -67.72 -0.18 0.82 16 3 C -0.18 -2.55 7.99 37.16 0.30 -2.25 16 4 N -0.52 -7.66 4.29 -228.08 -0.98 -8.64 16 5 C 0.06 0.81 5.46 -3.82 -0.02 0.79 16 6 C 0.06 1.08 6.25 37.16 0.23 1.31 16 7 O -0.38 -8.43 7.41 -35.23 -0.26 -8.69 16 8 C 0.17 4.25 4.76 36.01 0.17 4.42 16 9 C -0.52 -15.19 9.99 -34.44 -0.34 -15.53 16 10 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 11 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 13 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 17 C 0.12 1.40 5.25 -4.97 -0.03 1.38 16 18 C 0.01 0.16 5.29 -35.62 -0.19 -0.03 16 19 C -0.20 -2.47 10.81 -39.71 -0.43 -2.90 16 20 C -0.21 -2.40 10.91 -39.70 -0.43 -2.83 16 21 C -0.05 -0.55 12.09 29.42 0.36 -0.19 16 22 O -0.17 -2.27 8.14 5.71 0.05 -2.23 16 23 H 0.06 0.91 4.28 -51.93 -0.22 0.69 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.13 2.66 4.94 -51.93 -0.26 2.40 16 27 H 0.05 0.70 6.91 -51.93 -0.36 0.34 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.70 6.40 -51.93 -0.33 0.36 16 30 H 0.05 0.67 6.77 -51.93 -0.35 0.32 16 31 H 0.08 0.85 7.53 -51.93 -0.39 0.45 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.00 0.03 7.20 -51.93 -0.37 -0.35 16 35 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.09 0.93 7.50 -51.93 -0.39 0.54 16 38 H 0.07 0.76 5.16 -51.93 -0.27 0.49 16 39 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.20 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -31.88 323.09 -6.88 -38.76 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.31 Total: 1.04 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.35 Total: -15.11 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.20 Total: -35.48 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.21 Total: -10.91 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.88 -6.88 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293620041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.046 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds