Wall clock time and date at job start Mon Mar 30 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47226 * 2 1 4 4 N 1.46898 * 109.46978 * 120.00391 * 2 1 3 5 5 C 1.46903 * 110.99896 * 159.75329 * 4 2 1 6 6 C 1.53002 * 109.46901 * 283.33517 * 5 4 2 7 7 O 1.42900 * 109.46890 * 67.06202 * 6 5 4 8 8 C 1.42901 * 113.99647 * 184.78707 * 7 6 5 9 9 C 1.50708 * 109.47034 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99473 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00076 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99843 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00023 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47628 * 89.99907 * 13 11 9 15 15 H 1.48508 * 109.47015 * 209.99966 * 13 11 9 16 16 H 1.48501 * 109.46949 * 329.99540 * 13 11 9 17 17 C 1.46900 * 110.99530 * 283.69942 * 4 2 1 18 18 C 1.50705 * 109.47111 * 80.08214 * 17 4 2 19 19 C 1.34509 * 125.78848 * 80.81341 * 18 17 4 20 20 C 1.41380 * 106.84119 * 180.02562 * 19 18 17 21 21 C 1.34519 * 106.84050 * 359.97438 * 20 19 18 22 22 O 1.34301 * 108.41897 * 359.74058 * 21 20 19 23 23 H 1.09000 * 109.46795 * 309.36345 * 1 2 3 24 24 H 1.09004 * 109.47319 * 69.35755 * 1 2 3 25 25 H 1.08997 * 109.47483 * 189.36194 * 1 2 3 26 26 H 1.09004 * 109.46957 * 240.00068 * 2 1 3 27 27 H 1.09004 * 109.46797 * 172.10837 * 3 2 1 28 28 H 1.09002 * 109.46795 * 292.10007 * 3 2 1 29 29 H 1.08991 * 109.47515 * 52.10403 * 3 2 1 30 30 H 1.08994 * 109.47459 * 43.33753 * 5 4 2 31 31 H 1.08996 * 109.46842 * 163.33854 * 5 4 2 32 32 H 1.08996 * 109.47041 * 187.06423 * 6 5 4 33 33 H 1.09002 * 109.46807 * 307.06354 * 6 5 4 34 34 H 1.08997 * 109.47207 * 299.99865 * 8 7 6 35 35 H 1.09002 * 109.47233 * 60.00439 * 8 7 6 36 36 H 0.97002 * 119.99582 * 180.02562 * 12 11 9 37 37 H 1.09003 * 109.47161 * 200.07877 * 17 4 2 38 38 H 1.09002 * 109.47636 * 320.08284 * 17 4 2 39 39 H 1.07998 * 126.58397 * 0.03462 * 19 18 17 40 40 H 1.08002 * 126.58181 * 179.97438 * 20 19 18 41 41 H 1.07992 * 125.78719 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.4082 -1.1373 1.0205 6 6 3.4342 -2.3837 0.1335 7 8 3.0194 -2.0359 -1.1890 8 6 2.9042 -3.1518 -2.0743 9 6 2.4639 -2.6715 -3.4332 10 1 2.2890 -1.6194 -3.6035 11 6 2.2842 -3.5751 -4.4589 12 7 1.9004 -3.1559 -5.6449 13 14 2.5859 -5.3948 -4.1640 14 1 1.3271 -6.0381 -3.7095 15 1 3.0398 -6.0322 -5.4262 16 1 3.6309 -5.5608 -3.1221 17 6 1.8888 0.1590 2.3892 18 6 0.4663 0.1146 2.8848 19 6 -0.0727 -0.8575 3.6423 20 6 -1.4207 -0.4980 3.8718 21 6 -1.6246 0.6726 3.2412 22 8 -0.4765 1.0419 2.6502 23 1 -0.3633 0.6518 0.7945 24 1 -0.3634 0.3623 -0.9617 25 1 -0.3634 -1.0139 0.1672 26 1 1.8933 -0.5138 -0.8900 27 1 3.1209 1.4456 0.1411 28 1 1.7966 1.9138 -0.9522 29 1 1.5661 1.9954 0.8109 30 1 3.9861 -0.3431 0.5480 31 1 3.8420 -1.3737 1.9920 32 1 4.4465 -2.7866 0.1027 33 1 2.7568 -3.1340 0.5413 34 1 3.8706 -3.6484 -2.1605 35 1 2.1688 -3.8535 -1.6807 36 1 1.7736 -3.7917 -6.3664 37 1 2.5572 -0.2030 3.1704 38 1 2.1522 1.1851 2.1324 39 1 0.4280 -1.7427 4.0057 40 1 -2.1473 -1.0561 4.4436 41 1 -2.5526 1.2243 3.2184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293620041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:14 Heat of formation + Delta-G solvation = -36.911896 kcal Electronic energy + Delta-G solvation = -21150.025102 eV Core-core repulsion = 18031.720803 eV Total energy + Delta-G solvation = -3118.304300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44382 -39.90341 -38.10730 -34.87904 -33.96677 -33.14449 -32.13314 -30.22036 -28.62309 -28.12387 -25.98080 -24.02417 -23.13863 -22.54096 -21.58891 -20.39997 -19.00782 -18.15153 -17.64576 -17.45328 -16.80926 -16.47458 -16.31324 -15.72785 -15.53129 -14.94490 -14.75355 -14.50605 -14.11667 -13.71748 -13.64058 -13.54339 -13.47340 -13.15386 -13.11453 -12.78817 -12.52809 -12.42786 -12.17327 -12.14164 -11.89696 -11.81905 -11.58205 -11.15409 -10.88305 -10.67332 -10.20569 -9.31076 -9.16195 -8.36083 -6.42844 0.89361 1.33055 1.35519 1.46210 1.81710 2.19559 2.29639 2.97049 3.07597 3.12766 3.85510 4.06198 4.09390 4.22233 4.25722 4.33840 4.41906 4.43396 4.51444 4.54604 4.60000 4.69065 4.74554 4.80288 4.88215 4.91416 4.96666 5.03454 5.05446 5.13395 5.20398 5.30161 5.42591 5.44921 5.60604 5.72740 5.95794 6.14140 6.22786 6.36683 6.61030 6.79637 7.21725 8.80941 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.004514 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.553272 B = 6201.142530 C = 6285.918146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 C -0.170 4.170 4 N -0.533 5.533 5 C 0.063 3.937 6 C 0.053 3.947 7 O -0.395 6.395 8 C 0.180 3.820 9 C -0.538 4.538 10 H 0.031 0.969 11 C 0.014 3.986 12 N -0.943 5.943 13 Si 0.952 3.048 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.245 1.245 17 C 0.118 3.882 18 C -0.008 4.008 19 C -0.208 4.208 20 C -0.227 4.227 21 C -0.051 4.051 22 O -0.191 6.191 23 H 0.076 0.924 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.121 0.879 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.011 0.989 35 H 0.003 0.997 36 H 0.272 0.728 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 5.583 21.899 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 C -0.229 4.229 4 N -0.257 5.257 5 C -0.064 4.064 6 C -0.024 4.024 7 O -0.315 6.315 8 C 0.105 3.895 9 C -0.576 4.576 10 H 0.049 0.951 11 C -0.184 4.184 12 N -0.583 5.583 13 Si 0.774 3.226 14 H -0.188 1.188 15 H -0.199 1.199 16 H -0.169 1.169 17 C -0.009 4.009 18 C -0.058 4.058 19 C -0.228 4.228 20 C -0.246 4.246 21 C -0.118 4.118 22 O -0.088 6.088 23 H 0.094 0.906 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.021 0.979 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.169 0.831 40 H 0.180 0.820 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.602 5.561 21.565 22.328 hybrid contribution 0.149 -0.417 -0.620 0.763 sum -1.453 5.143 20.944 21.615 Atomic orbital electron populations 1.21924 0.95397 1.01154 1.01241 1.21957 0.95396 0.93268 0.93945 1.22313 1.01164 0.97307 1.02101 1.62060 1.21010 1.40127 1.02519 1.22248 0.88324 0.95767 1.00037 1.22714 0.98614 0.97927 0.83166 1.87815 1.88773 1.33645 1.21295 1.20258 0.94649 0.86333 0.88284 1.21144 1.46598 0.95028 0.94814 0.95063 1.25790 0.93854 1.04646 0.94120 1.70036 1.47884 1.37186 1.03160 0.85654 0.80015 0.78097 0.78851 1.18823 1.19870 1.16860 1.20784 0.88117 0.98497 0.93474 1.22412 0.92188 0.90173 1.01034 1.21753 0.95687 1.01065 1.04296 1.22122 0.97530 0.98722 1.06245 1.24635 0.89589 0.98694 0.98918 1.84012 1.19529 1.45011 1.60215 0.90573 0.93992 0.94461 0.89540 0.92155 0.92907 0.91277 0.93645 0.86118 0.92172 0.93463 0.97180 0.97903 0.91931 0.85932 0.91216 0.83106 0.82038 0.75461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 8.57 71.98 0.62 -4.14 16 2 C 0.06 2.08 2.73 44.91 0.12 2.21 16 3 C -0.17 -4.79 7.99 71.98 0.58 -4.21 16 4 N -0.53 -14.88 4.29 -875.52 -3.75 -18.63 16 5 C 0.06 1.62 5.46 86.30 0.47 2.09 16 6 C 0.05 1.73 6.25 71.98 0.45 2.18 16 7 O -0.40 -17.88 7.41 -148.98 -1.10 -18.99 16 8 C 0.18 9.09 4.76 71.24 0.34 9.43 16 9 C -0.54 -32.84 9.99 25.60 0.26 -32.58 16 10 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 11 C 0.01 0.82 5.47 84.65 0.46 1.28 16 12 N -0.94 -59.84 13.96 21.45 0.30 -59.54 16 13 Si 0.95 44.01 27.47 68.60 1.88 45.90 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 17 C 0.12 2.57 5.25 85.56 0.45 3.02 16 18 C -0.01 -0.20 5.29 24.83 0.13 -0.06 16 19 C -0.21 -4.82 10.81 22.19 0.24 -4.58 16 20 C -0.23 -4.67 10.91 22.19 0.24 -4.43 16 21 C -0.05 -1.02 12.09 66.97 0.81 -0.21 16 22 O -0.19 -4.67 8.14 -2.49 -0.02 -4.69 16 23 H 0.08 2.31 4.28 -2.39 -0.01 2.30 16 24 H 0.04 1.46 8.14 -2.38 -0.02 1.45 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 3.72 4.94 -2.38 -0.01 3.71 16 27 H 0.06 1.57 6.91 -2.38 -0.02 1.56 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.71 6.40 -2.39 -0.02 1.70 16 30 H 0.05 1.19 6.77 -2.39 -0.02 1.18 16 31 H 0.12 2.08 7.53 -2.39 -0.02 2.07 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.01 0.50 7.20 -2.39 -0.02 0.49 16 35 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 37 H 0.12 1.95 7.50 -2.39 -0.02 1.93 16 38 H 0.07 1.46 5.16 -2.39 -0.01 1.44 16 39 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.23 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -71.99 323.09 3.42 -68.56 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.95 Total: 17.40 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 5.16 Total: -30.01 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -3.45 Total: -78.17 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -1.12 Total: -23.68 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -71.99 3.42 -68.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293620041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.652 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds