Wall clock time and date at job start Mon Mar 30 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.52998 * 109.47175 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47266 * 179.97438 * 4 3 2 6 6 N 1.29948 * 126.28813 * 270.02895 * 5 4 3 7 7 O 1.21295 * 110.25220 * 179.68143 * 6 5 4 8 8 C 1.33641 * 109.81196 * 0.47185 * 7 6 5 9 9 C 1.50693 * 126.55346 * 179.80199 * 8 7 6 10 10 H 1.08999 * 109.47479 * 194.68113 * 9 8 7 11 11 C 1.53002 * 109.47388 * 74.68224 * 9 8 7 12 12 N 1.46495 * 109.47263 * 314.68387 * 9 8 7 13 13 C 1.36935 * 120.00021 * 245.68897 * 12 9 8 14 14 H 1.08008 * 120.00426 * 145.46218 * 13 12 9 15 15 C 1.38818 * 120.00079 * 325.45158 * 13 12 9 16 16 N 1.31617 * 119.99597 * 346.03543 * 15 13 12 17 17 Si 1.86795 * 119.99955 * 166.02918 * 15 13 12 18 18 H 1.48501 * 109.47205 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47000 * 120.00667 * 17 15 13 20 20 H 1.48501 * 109.47418 * 240.00510 * 17 15 13 21 21 C 1.46499 * 120.00143 * 65.68187 * 12 9 8 22 22 C 1.53006 * 109.46844 * 95.61449 * 21 12 9 23 23 N 1.31135 * 106.89308 * 359.53428 * 8 7 6 24 24 H 1.08999 * 109.47086 * 300.00051 * 1 2 3 25 25 H 1.08998 * 109.47151 * 60.00335 * 1 2 3 26 26 H 1.09002 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47086 * 239.99949 * 2 1 3 28 28 H 1.09007 * 109.46656 * 119.99865 * 2 1 3 29 29 H 1.08999 * 109.47167 * 59.99999 * 3 2 1 30 30 H 1.08998 * 109.46819 * 299.99868 * 3 2 1 31 31 H 1.09003 * 109.46738 * 59.99601 * 4 3 2 32 32 H 1.08996 * 109.46984 * 300.00477 * 4 3 2 33 33 H 1.08993 * 109.47085 * 300.00501 * 11 9 8 34 34 H 1.09001 * 109.46925 * 60.00186 * 11 9 8 35 35 H 1.08999 * 109.47251 * 179.97438 * 11 9 8 36 36 H 0.96998 * 119.99579 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47182 * 335.61765 * 21 12 9 38 38 H 1.09000 * 109.47364 * 215.61228 * 21 12 9 39 39 H 1.09000 * 109.46960 * 300.00026 * 22 21 12 40 40 H 1.08992 * 109.47148 * 60.00204 * 22 21 12 41 41 H 1.09005 * 109.46620 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 7 4.3287 3.5879 -1.0478 7 8 4.7113 4.6892 -0.7132 8 6 4.7460 4.7710 0.6203 9 6 5.1679 5.9661 1.4355 10 1 5.3412 5.6594 2.4670 11 6 4.0642 7.0251 1.3970 12 7 6.4017 6.5262 0.8787 13 6 7.5606 6.4884 1.6071 14 1 8.5086 6.3546 1.1073 15 6 7.5170 6.6223 2.9882 16 7 6.4203 7.0553 3.5730 17 14 9.0147 6.1876 4.0164 18 1 10.1107 5.7291 3.1254 19 1 9.4604 7.3854 4.7726 20 1 8.6639 5.1034 4.9685 21 6 6.3957 7.1267 -0.4576 22 6 6.2114 8.6407 -0.3355 23 7 4.3373 3.6144 1.0837 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9288 0.8908 33 1 3.8908 7.3317 0.3655 34 1 3.1462 6.6084 1.8113 35 1 4.3692 7.8893 1.9870 36 1 6.3897 7.1485 4.5380 37 1 5.5763 6.7067 -1.0410 38 1 7.3421 6.9149 -0.9553 39 1 5.2651 8.8525 0.1622 40 1 7.0307 9.0606 0.2478 41 1 6.2065 9.0873 -1.3298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298238516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:31 Heat of formation + Delta-G solvation = 60.509985 kcal Electronic energy + Delta-G solvation = -21001.301108 eV Core-core repulsion = 17919.514090 eV Total energy + Delta-G solvation = -3081.787019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.78674 -36.85765 -36.45346 -34.67243 -32.54243 -31.92080 -30.40425 -29.43473 -28.42726 -24.93788 -24.39244 -23.43069 -22.40235 -21.33253 -20.93800 -19.57035 -17.40246 -17.13427 -16.28830 -15.59934 -15.12460 -14.42037 -14.13866 -14.08070 -13.81949 -13.61313 -13.19316 -12.52299 -12.42861 -12.21002 -11.85272 -11.78036 -11.62529 -11.55086 -11.35820 -11.16169 -11.12164 -10.98234 -10.72137 -10.67142 -10.63955 -10.42691 -10.28278 -10.15070 -9.89867 -9.73321 -9.16522 -8.64422 -6.90411 -6.01875 -3.53151 1.91162 2.91665 3.29867 3.38980 3.40963 3.74275 4.14406 4.36193 4.61388 4.85474 4.89001 4.98446 5.20389 5.27346 5.40260 5.47623 5.54418 5.65527 5.74111 5.81958 5.95469 6.00638 6.08911 6.15197 6.20999 6.23205 6.30126 6.39552 6.47217 6.52886 6.57703 6.63909 6.75525 6.93990 7.21175 7.23001 7.30396 7.68214 8.30615 8.88768 9.00874 9.58571 10.13276 11.06710 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.004963 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.258733 B = 5640.651196 C = 6260.537290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.023 4.023 5 C 0.158 3.842 6 N -0.410 5.410 7 O 0.064 5.936 8 C 0.203 3.797 9 C 0.260 3.740 10 H 0.148 0.852 11 C -0.142 4.142 12 N -0.571 5.571 13 C -0.265 4.265 14 H 0.069 0.931 15 C 0.016 3.984 16 N -0.893 5.893 17 Si 0.906 3.094 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.286 1.286 21 C 0.136 3.864 22 C -0.164 4.164 23 N -0.505 5.505 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.260 0.740 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 -7.170 -5.480 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.152 4.152 4 C -0.062 4.062 5 C -0.115 4.115 6 N -0.123 5.123 7 O 0.011 5.989 8 C -0.019 4.019 9 C 0.148 3.852 10 H 0.165 0.835 11 C -0.201 4.201 12 N -0.290 5.290 13 C -0.395 4.395 14 H 0.087 0.913 15 C -0.185 4.185 16 N -0.536 5.536 17 Si 0.735 3.265 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.212 1.212 21 C 0.010 3.990 22 C -0.223 4.223 23 N -0.239 5.239 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.233 -7.690 -5.821 12.681 hybrid contribution 0.844 -0.066 0.645 1.064 sum -7.389 -7.757 -5.176 11.898 Atomic orbital electron populations 1.21766 0.95789 1.01465 1.01952 1.21511 0.95957 0.96344 1.02183 1.21571 0.93520 0.97258 1.02860 1.19859 0.95823 0.86546 1.03967 1.25716 1.01117 1.00100 0.84555 1.74478 1.19235 0.93895 1.24707 1.85272 1.61197 1.26208 1.26243 1.31790 0.90618 0.98380 0.81081 1.19500 0.86486 0.83033 0.96165 0.83520 1.22143 0.96788 1.00441 1.00718 1.43940 1.06401 1.63383 1.15312 1.19203 0.85968 1.45336 0.88952 0.91300 1.25226 0.97433 0.97928 0.97867 1.69851 1.27289 1.46551 1.09890 0.86174 0.82237 0.77906 0.80169 1.20069 1.21333 1.21217 1.20988 0.98980 0.91859 0.87169 1.22316 1.02220 0.98687 0.99075 1.71912 1.20245 1.02556 1.29231 0.92629 0.92786 0.92791 0.91911 0.91689 0.91253 0.91791 0.89793 0.89110 0.94047 0.93981 0.89341 0.92996 0.93676 0.93884 0.92999 0.92540 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 4 C -0.02 -0.32 5.84 -27.89 -0.16 -0.48 16 5 C 0.16 3.01 7.47 -156.38 -1.17 1.84 16 6 N -0.41 -8.29 12.16 30.89 0.38 -7.92 16 7 O 0.06 1.36 9.33 18.11 0.17 1.53 16 8 C 0.20 4.45 7.20 -13.06 -0.09 4.36 16 9 C 0.26 5.90 2.35 -69.09 -0.16 5.74 16 10 H 0.15 3.78 5.72 -51.93 -0.30 3.48 16 11 C -0.14 -2.84 8.00 37.16 0.30 -2.55 16 12 N -0.57 -13.48 2.36 -166.98 -0.39 -13.88 16 13 C -0.27 -6.86 9.54 -15.06 -0.14 -7.00 16 14 H 0.07 1.79 7.87 -52.48 -0.41 1.38 16 15 C 0.02 0.40 4.96 -17.43 -0.09 0.32 16 16 N -0.89 -23.48 11.07 55.49 0.61 -22.87 16 17 Si 0.91 20.72 29.58 -169.99 -5.03 15.70 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.14 2.78 5.42 -4.04 -0.02 2.76 16 22 C -0.16 -3.08 9.99 37.16 0.37 -2.71 16 23 N -0.51 -10.85 11.55 -9.87 -0.11 -10.96 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.77 6.62 -51.93 -0.34 0.42 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.91 7.84 -51.93 -0.41 1.50 16 36 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.04 0.89 5.88 -51.93 -0.31 0.58 16 38 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.05 0.98 6.06 -51.93 -0.31 0.66 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -27.38 333.27 -7.16 -34.54 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.71 Total: 0.30 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.10 Total: -1.47 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.48 Total: -55.62 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.17 Total: 1.53 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.38 -7.16 -34.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298238516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.051 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds