Wall clock time and date at job start Mon Mar 30 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.52998 * 109.47175 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47266 * 179.97438 * 4 3 2 6 6 N 1.29948 * 126.28813 * 270.02895 * 5 4 3 7 7 O 1.21295 * 110.25220 * 179.68143 * 6 5 4 8 8 C 1.33641 * 109.81196 * 0.47185 * 7 6 5 9 9 C 1.50693 * 126.55346 * 179.80199 * 8 7 6 10 10 H 1.08999 * 109.47479 * 194.68113 * 9 8 7 11 11 C 1.53002 * 109.47388 * 74.68224 * 9 8 7 12 12 N 1.46495 * 109.47263 * 314.68387 * 9 8 7 13 13 C 1.36935 * 120.00021 * 245.68897 * 12 9 8 14 14 H 1.08008 * 120.00426 * 145.46218 * 13 12 9 15 15 C 1.38818 * 120.00079 * 325.45158 * 13 12 9 16 16 N 1.31617 * 119.99597 * 346.03543 * 15 13 12 17 17 Si 1.86795 * 119.99955 * 166.02918 * 15 13 12 18 18 H 1.48501 * 109.47205 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47000 * 120.00667 * 17 15 13 20 20 H 1.48501 * 109.47418 * 240.00510 * 17 15 13 21 21 C 1.46499 * 120.00143 * 65.68187 * 12 9 8 22 22 C 1.53006 * 109.46844 * 95.61449 * 21 12 9 23 23 N 1.31135 * 106.89308 * 359.53428 * 8 7 6 24 24 H 1.08999 * 109.47086 * 300.00051 * 1 2 3 25 25 H 1.08998 * 109.47151 * 60.00335 * 1 2 3 26 26 H 1.09002 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47086 * 239.99949 * 2 1 3 28 28 H 1.09007 * 109.46656 * 119.99865 * 2 1 3 29 29 H 1.08999 * 109.47167 * 59.99999 * 3 2 1 30 30 H 1.08998 * 109.46819 * 299.99868 * 3 2 1 31 31 H 1.09003 * 109.46738 * 59.99601 * 4 3 2 32 32 H 1.08996 * 109.46984 * 300.00477 * 4 3 2 33 33 H 1.08993 * 109.47085 * 300.00501 * 11 9 8 34 34 H 1.09001 * 109.46925 * 60.00186 * 11 9 8 35 35 H 1.08999 * 109.47251 * 179.97438 * 11 9 8 36 36 H 0.96998 * 119.99579 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47182 * 335.61765 * 21 12 9 38 38 H 1.09000 * 109.47364 * 215.61228 * 21 12 9 39 39 H 1.09000 * 109.46960 * 300.00026 * 22 21 12 40 40 H 1.08992 * 109.47148 * 60.00204 * 22 21 12 41 41 H 1.09005 * 109.46620 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 7 4.3287 3.5879 -1.0478 7 8 4.7113 4.6892 -0.7132 8 6 4.7460 4.7710 0.6203 9 6 5.1679 5.9661 1.4355 10 1 5.3412 5.6594 2.4670 11 6 4.0642 7.0251 1.3970 12 7 6.4017 6.5262 0.8787 13 6 7.5606 6.4884 1.6071 14 1 8.5086 6.3546 1.1073 15 6 7.5170 6.6223 2.9882 16 7 6.4203 7.0553 3.5730 17 14 9.0147 6.1876 4.0164 18 1 10.1107 5.7291 3.1254 19 1 9.4604 7.3854 4.7726 20 1 8.6639 5.1034 4.9685 21 6 6.3957 7.1267 -0.4576 22 6 6.2114 8.6407 -0.3355 23 7 4.3373 3.6144 1.0837 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9288 0.8908 33 1 3.8908 7.3317 0.3655 34 1 3.1462 6.6084 1.8113 35 1 4.3692 7.8893 1.9870 36 1 6.3897 7.1485 4.5380 37 1 5.5763 6.7067 -1.0410 38 1 7.3421 6.9149 -0.9553 39 1 5.2651 8.8525 0.1622 40 1 7.0307 9.0606 0.2478 41 1 6.2065 9.0873 -1.3298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298238516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:31 Heat of formation + Delta-G solvation = 45.434513 kcal Electronic energy + Delta-G solvation = -21001.954830 eV Core-core repulsion = 17919.514090 eV Total energy + Delta-G solvation = -3082.440740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.39572 -38.61923 -37.66473 -35.98685 -34.21051 -33.66057 -31.80573 -30.76239 -30.19403 -26.28676 -25.97681 -25.13541 -23.90095 -22.67276 -22.05396 -21.23428 -19.13548 -18.82321 -17.90972 -17.09383 -16.40772 -16.05026 -15.84325 -15.38120 -15.26433 -14.86495 -14.24922 -14.11483 -13.89860 -13.44816 -13.41828 -13.30935 -13.29470 -12.97408 -12.83209 -12.68561 -12.38006 -12.33036 -12.20132 -12.13453 -11.98392 -11.91608 -11.83503 -11.60544 -11.48840 -11.39569 -10.80801 -10.53843 -8.77525 -7.97423 -5.50863 0.26287 1.33148 1.46885 1.51136 1.59062 2.04733 2.46230 2.75263 3.11188 3.29980 3.58518 3.92078 3.97346 4.05932 4.27673 4.44232 4.47100 4.50396 4.54605 4.66956 4.69890 4.82543 4.86831 4.89302 4.89640 4.92567 5.03625 5.05966 5.08217 5.16676 5.23353 5.32710 5.34624 5.44068 5.44938 5.54020 5.62681 5.71062 6.39043 7.04896 7.29179 7.69720 8.21780 9.09187 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.004963 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.258733 B = 5640.651196 C = 6260.537290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.024 4.024 5 C 0.164 3.836 6 N -0.419 5.419 7 O 0.057 5.943 8 C 0.197 3.803 9 C 0.263 3.737 10 H 0.116 0.884 11 C -0.128 4.128 12 N -0.584 5.584 13 C -0.279 4.279 14 H 0.061 0.939 15 C -0.022 4.022 16 N -0.909 5.909 17 Si 0.960 3.040 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.290 1.290 21 C 0.134 3.866 22 C -0.153 4.153 23 N -0.523 5.523 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.258 0.742 37 H 0.055 0.945 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 -8.241 -6.257 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.145 4.145 4 C -0.063 4.063 5 C -0.109 4.109 6 N -0.134 5.134 7 O 0.006 5.994 8 C -0.025 4.025 9 C 0.152 3.848 10 H 0.133 0.867 11 C -0.187 4.187 12 N -0.304 5.304 13 C -0.409 4.409 14 H 0.079 0.921 15 C -0.221 4.221 16 N -0.552 5.552 17 Si 0.788 3.212 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.217 1.217 21 C 0.009 3.991 22 C -0.212 4.212 23 N -0.258 5.258 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.818 -8.740 -6.621 14.071 hybrid contribution 0.998 0.201 0.838 1.318 sum -7.820 -8.539 -5.783 12.943 Atomic orbital electron populations 1.21772 0.95144 1.02359 1.01748 1.21487 0.96469 0.94365 1.03140 1.21524 0.91982 0.99087 1.01915 1.20169 0.97048 0.83687 1.05382 1.26566 0.99432 1.01521 0.83387 1.74468 1.20092 0.93792 1.25051 1.85249 1.61579 1.26853 1.25699 1.31512 0.91141 0.98351 0.81516 1.19261 0.87038 0.83824 0.94681 0.86657 1.21977 0.96301 0.99028 1.01408 1.44070 1.06080 1.64195 1.16076 1.19335 0.86597 1.45433 0.89532 0.92090 1.25785 0.99510 0.98154 0.98618 1.69955 1.28400 1.47112 1.09769 0.85346 0.79872 0.77337 0.78668 1.19793 1.21149 1.21661 1.21082 0.99285 0.92908 0.85819 1.22178 1.01128 0.97322 1.00575 1.71931 1.20705 1.02816 1.30373 0.93054 0.92844 0.91357 0.90711 0.90977 0.92566 0.92401 0.87892 0.88106 0.92529 0.92780 0.90989 0.93255 0.92708 0.94049 0.93252 0.94612 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.90 5.93 30.60 0.18 -1.72 16 3 C -0.11 -2.37 5.20 30.59 0.16 -2.21 16 4 C -0.02 -0.63 5.84 29.85 0.17 -0.45 16 5 C 0.16 6.05 7.47 138.46 1.03 7.09 16 6 N -0.42 -16.51 12.16 -60.34 -0.73 -17.24 16 7 O 0.06 2.36 9.33 74.85 0.70 3.06 16 8 C 0.20 8.59 7.20 88.38 0.64 9.23 16 9 C 0.26 12.05 2.35 44.24 0.10 12.15 16 10 H 0.12 6.08 5.72 -2.39 -0.01 6.07 16 11 C -0.13 -5.10 8.00 71.98 0.58 -4.53 16 12 N -0.58 -27.73 2.36 -682.20 -1.61 -29.34 16 13 C -0.28 -14.59 9.54 84.04 0.80 -13.79 16 14 H 0.06 3.21 7.87 -2.91 -0.02 3.19 16 15 C -0.02 -1.16 4.96 84.86 0.42 -0.74 16 16 N -0.91 -48.46 11.07 21.65 0.24 -48.22 16 17 Si 0.96 42.87 29.58 68.60 2.03 44.90 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 C 0.13 5.42 5.42 86.38 0.47 5.88 16 22 C -0.15 -5.58 9.99 71.98 0.72 -4.86 16 23 N -0.52 -22.27 11.55 -303.22 -3.50 -25.78 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 3.11 7.84 -2.39 -0.02 3.10 16 36 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 37 H 0.05 2.09 5.88 -2.39 -0.01 2.08 16 38 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 39 H 0.05 1.81 6.06 -2.39 -0.01 1.79 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -58.05 333.27 4.11 -53.94 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.00 Total: 14.18 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.99 Total: 4.49 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -5.61 Total: -120.57 kcal Atomic # 8 Polarization: 2.36 SS G_CDS: 0.70 Total: 3.06 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -58.05 4.11 -53.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298238516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.377 kcal (2) G-P(sol) polarization free energy of solvation -58.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds